ZRdb KZFP & Repeats
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Human_ZNF274

  • Protein
    Neurotrophin receptor-interacting factor homolog
  • Length
    653
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    99.0 Mya
  • Time of Changing in binding specificity
    99.0 Mya
  • Uniprot_ID
    Q96GC6
  • NCBI_ID
    10782
Sequence:
MASRLPTAWSCEPVTFEDVTLGFTPEEWGLLDLKQKSLYREVMLENYRNLVSVEHQLSKPDVVSQLEEAEDFWPVERGIPQDTIPEYPELQLDPKLDPLPAESPLMNIEVVEVLTLNQEVAGPRNAQIQALYAEDGSLSADAPSEQVQQQGKHPGDPEAARQRFRQFRYKDMTGPREALDQLRELCHQWLQPKARSKEQILELLVLEQFLGALPVKLRTWVESQHPENCQEVVALVEGVTWMSEEEVLPAGQPAEGTTCCLEVTAQQEEKQEDAAICPVTVLPEEPVTFQDVAVDFSREEWGLLGPTQRTEYRDVMLETFGHLVSVGWETTLENKELAPNSDIPEEEPAPSLKVQESSRDCALSSTLEDTLQGGVQEVQDTVLKQMESAQEKDLPQKKHFDNRESQANSGALDTNQVSLQKIDNPESQANSGALDTNQVLLHKIPPRKRLRKRDSQVKSMKHNSRVKIHQKSCERQKAKEGNGCRKTFSRSTKQITFIRIHKGSQVCRCSECGKIFRNPRYFSVHKKIHTGERPYVCQDCGKGFVQSSSLTQHQRVHSGERPFECQECGRTFNDRSAISQHLRTHTGAKPYKCQDCGKAFRQSSHLIRHQRTHTGERPYACNKCGKAFTQSSHLIGHQRTHNRTKRKKKQPTS
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 14..85
2 scan 161..243
3 C2h2 507..529
4 C2h2 535..557
5 C2h2 563..585
6 C2h2 591..613
7 C2h2 619..641
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component cytoplasm
2 Cellular Component nucleolus
3 Molecular Function chromatin binding
4 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
5 Molecular Function metal ion binding
6 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
7 Molecular Function sequence-specific DNA binding
8 Molecular Function sequence-specific double-stranded DNA binding
9 Biological Process negative regulation of transcription by RNA polymerase II
10 Biological Process regulation of DNA-templated transcription
11 Biological Process regulation of histone H3-K9 trimethylation
12 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 AluJb 279 **** 74.0 Weakly correlated
2 MIRb 191 n.s 99.0 Highly correlated
3 L2a 176 n.s 99.0 Highly correlated
4 AluJo 159 **** 74.0 Weakly correlated
5 L2b 137 *** 99.0 Highly correlated
6 L2c 134 n.s 99.0 Highly correlated
7 MSTA 129 **** 43.0 Weakly correlated
8 MIR 127 n.s 99.0 Highly correlated
9 AluJr 124 n.s 74.0 Weakly correlated
10 MSTB 111 **** 43.0 Weakly correlated
11 AluSx 110 n.s 74.0 Weakly correlated
12 L1M4 105 **** 99.0 Highly correlated
13 AluSx1 103 n.s 74.0 Weakly correlated
14 L2 94 n.s 99.0 Highly correlated
15 MIR3 93 **** 99.0 Highly correlated
16 MIRc 90 * 99.0 Highly correlated
17 AluSz 81 n.s 74.0 Weakly correlated
18 MSTB1 78 **** 74.0 Weakly correlated
19 HERVL-int 77 **** 74.0 Weakly correlated
20 THE1D 77 **** 43.0 Weakly correlated
21 AluY 66 n.s 74.0 Weakly correlated
22 THE1C 65 **** 43.0 Weakly correlated
23 L1MA4A 62 **** 87.0 Weakly correlated
24 AluSz6 59 n.s 74.0 Weakly correlated
25 L1MB5 53 **** 99.0 Highly correlated
26 L1ME1 52 n.s 99.0 Highly correlated
27 AluJr4 50 **** 74.0 Weakly correlated
28 L1M2 46 ** 99.0 Highly correlated
29 L1MB7 45 n.s 99.0 Highly correlated
30 L1M5 44 n.s 99.0 Highly correlated
31 L1MB8 44 n.s 99.0 Highly correlated
32 L1M1 43 n.s 74.0 Weakly correlated
33 LTR2 43 **** 28.9 Weakly correlated
34 MLT1K 39 *** 99.0 Highly correlated
35 L1MB4 38 *** 99.0 Highly correlated
36 L1MC3 37 n.s 99.0 Highly correlated
37 MSTB2 37 **** 74.0 Weakly correlated
38 AluSq2 36 n.s 74.0 Weakly correlated
39 MLT1C 36 n.s 94.0 Weakly correlated
40 L3 31 n.s 99.0 Highly correlated
41 L1PA13 30 n.s 74.0 Weakly correlated
42 L1PA16 30 n.s 74.0 Weakly correlated
43 L1PB1 29 n.s 74.0 Weakly correlated
44 Harlequin-int 28 **** 74.0 Weakly correlated
45 L3b 28 **** 99.0 Highly correlated
46 MLT1B 28 n.s 99.0 Highly correlated
47 AluSp 27 n.s 74.0 Weakly correlated
48 MLT1D 27 n.s 99.0 Highly correlated
49 AluSx3 26 n.s 74.0 Weakly correlated
50 L1PREC2 25 n.s 43.0 Weakly correlated
51 AluSc8 23 n.s 74.0 Weakly correlated
52 L1MB3 23 n.s 99.0 Highly correlated
53 L1PA15 23 n.s 74.0 Weakly correlated
54 L1MA3 22 n.s 74.0 Weakly correlated
55 L1ME3E 22 **** 99.0 Highly correlated
56 MLT1H 22 * 99.0 Highly correlated
57 L1MA7 21 n.s 87.0 Weakly correlated
58 L1MEc 21 n.s 99.0 Highly correlated
59 L1MEf 21 n.s 99.0 Highly correlated
60 LTR33 21 * 99.0 Highly correlated
61 MLT1L 21 * 99.0 Highly correlated
62 MLT2B2 21 **** 99.0 Highly correlated
63 L1MCa 20 n.s 99.0 Highly correlated
64 L1MEg 20 n.s 99.0 Highly correlated
65 MLT1J 20 n.s 99.0 Highly correlated
66 ERV3-16A3_I-int 19 n.s 99.0 Highly correlated
67 L1PBa 19 n.s 74.0 Weakly correlated
68 MER52A 19 ** 74.0 Weakly correlated
69 MLT1F2 19 * 99.0 Highly correlated
70 MLT1H2 19 **** 99.0 Highly correlated
71 MLT1I 19 * 99.0 Highly correlated
72 MSTA-int 19 n.s 43.0 Weakly correlated
73 AluSc 18 n.s 74.0 Weakly correlated
74 AluSg 18 n.s 74.0 Weakly correlated
75 FLAM_C 18 n.s 74.0 Weakly correlated
76 L1ME2 18 n.s 99.0 Highly correlated
77 L1ME3Cz 18 n.s 99.0 Highly correlated
78 LTR10A 18 **** 28.9 Weakly correlated
79 MER61E 18 **** 43.0 Weakly correlated
80 HERVE-int 17 **** 19.6 Weakly correlated
81 L1MA1 17 n.s 74.0 Weakly correlated
82 L1MC1 17 n.s 99.0 Highly correlated
83 LTR19B 17 **** 43.0 Weakly correlated
84 MLT1A0 17 n.s 99.0 Highly correlated
85 FRAM 16 *** 74.0 Weakly correlated
86 HAL1 16 n.s 99.0 Highly correlated
87 LTR19C 16 **** 43.0 Weakly correlated
88 LTR62 16 **** 74.0 Weakly correlated
89 MLT1N2 16 **** 99.0 Highly correlated
90 L1MA2 15 n.s 74.0 Weakly correlated
91 L1MC4 15 n.s 99.0 Highly correlated
92 L1MC4a 15 n.s 99.0 Highly correlated
93 L1ME4a 15 n.s 99.0 Highly correlated
94 L1MEd 15 n.s 99.0 Highly correlated
95 MER67C 15 **** 99.0 Highly correlated
96 AluYj4 14 **** 0.0 Weakly correlated
97 ERVL-E-int 14 n.s 99.0 Highly correlated
98 L1MA5 14 n.s 87.0 Weakly correlated
99 L1ME3A 14 n.s 99.0 Highly correlated
100 L1PA15-16 14 * 74.0 Weakly correlated
101 L1PA7 14 n.s 74.0 Weakly correlated
102 MER74A 14 **** 99.0 Highly correlated
103 MLT1F 14 * 99.0 Highly correlated
104 AluSq 13 n.s 74.0 Weakly correlated
105 L1MD2 13 n.s 99.0 Highly correlated
106 L1MDa 13 n.s 99.0 Highly correlated
107 L1PA14 13 n.s 74.0 Weakly correlated
108 LTR16A 13 ** 99.0 Highly correlated
109 LTR16B1 13 **** 99.0 Highly correlated
110 LTR16C 13 n.s 99.0 Highly correlated
111 MER54A 13 **** 87.0 Weakly correlated
112 MER67D 13 **** 99.0 Highly correlated
113 MIR1_Amn 13 ** 319.0 Weakly correlated
114 MLT1A1 13 n.s 87.0 Weakly correlated
115 THE1C-int 13 n.s 43.0 Weakly correlated
116 HERV1_LTRa 12 **** 28.9 Weakly correlated
117 L1M2b 12 **** 87.0 Weakly correlated
118 L1M4b 12 n.s 99.0 Highly correlated
119 L1MA4 12 n.s 87.0 Weakly correlated
120 L1MA6 12 n.s 87.0 Weakly correlated
121 L1MB2 12 n.s 99.0 Highly correlated
122 L1PA11 12 n.s 74.0 Weakly correlated
123 L1PA17 12 n.s 74.0 Weakly correlated
124 L1PA6 12 n.s 28.9 Weakly correlated
125 LTR5_Hs 12 **** 0.0 Weakly correlated
126 MER50 12 * 43.0 Weakly correlated
127 MLT1G 12 ** 99.0 Highly correlated
128 THE1B 12 n.s 43.0 Weakly correlated
129 L1MB1 11 n.s 99.0 Highly correlated
130 L1P3 11 n.s 74.0 Weakly correlated
131 L1PA10 11 n.s 74.0 Weakly correlated
132 L1PB3 11 n.s 74.0 Weakly correlated
133 L4_A_Mam 11 n.s 99.0 Highly correlated
134 LTR53 11 **** 99.0 Highly correlated
135 LTR8 11 n.s 43.0 Weakly correlated
136 MLT1E2 11 n.s 99.0 Highly correlated
137 MamRTE1 11 n.s 99.0 Highly correlated
138 AluYh3 10 *** 15.2 Weakly correlated
139 L1M3e 10 *** 99.0 Highly correlated
140 L1M4c 10 n.s 99.0 Highly correlated
141 L1MA9 10 n.s 99.0 Highly correlated
142 L1MD1 10 n.s 99.0 Highly correlated
143 L1PB4 10 n.s 99.0 Highly correlated
144 LTR1D 10 **** 43.0 Weakly correlated
145 MER41-int 10 n.s 74.0 Weakly correlated
146 MER4B-int 10 ** 99.0 Highly correlated
147 MLT1G3 10 * 99.0 Highly correlated
148 MLT1J1 10 * 99.0 Highly correlated
149 MSTB-int 10 ** 43.0 Weakly correlated
150 THE1D-int 10 n.s 28.9 Weakly correlated
151 ERV3-16A3_LTR 9 **** 99.0 Highly correlated
152 L1M2a 9 *** 87.0 Weakly correlated
153 L1MA5A 9 n.s 87.0 Weakly correlated
154 L1MA8 9 n.s 87.0 Weakly correlated
155 L1PA5 9 n.s 19.6 Weakly correlated
156 LTR10B1 9 **** 28.9 Weakly correlated
157 LTR16 9 * 99.0 Highly correlated
158 LTR33A_ 9 *** 99.0 Highly correlated
159 MER52D 9 ** 74.0 Weakly correlated
160 MLT1E3 9 ** 99.0 Highly correlated
161 MLT1J2 9 n.s 99.0 Highly correlated
162 L1M3c 8 ** 99.0 Highly correlated
163 L1MD 8 n.s 99.0 Highly correlated
164 L1ME3C 8 n.s 99.0 Highly correlated
165 L1PA8A 8 n.s 74.0 Weakly correlated
166 LTR12C 8 n.s 19.6 Weakly correlated
167 LTR16E1 8 * 99.0 Highly correlated
168 LTR1D1 8 **** 43.0 Weakly correlated
169 LTR28B 8 **** 43.0 Weakly correlated
170 LTR4 8 **** 28.9 Weakly correlated
171 LTR55 8 **** 99.0 Highly correlated
172 LTR5B 8 *** 28.9 Weakly correlated
173 MER74B 8 *** 99.0 Highly correlated
174 MLT2B4 8 n.s 99.0 Highly correlated
175 MSTA1 8 **** 74.0 Weakly correlated
176 Plat_L3 8 ** 99.0 Highly correlated
177 FLAM_A 7 n.s 74.0 Weakly correlated
178 L1M3 7 n.s 99.0 Highly correlated
179 L1M3b 7 ** 99.0 Highly correlated
180 L1M4a1 7 n.s 99.0 Highly correlated
181 L1MC2 7 n.s 99.0 Highly correlated
182 L1ME3 7 n.s 99.0 Highly correlated
183 L1ME3D 7 n.s 99.0 Highly correlated
184 L1ME3G 7 n.s 99.0 Highly correlated
185 L1ME4b 7 n.s 99.0 Highly correlated
186 L1MEg1 7 *** 99.0 Highly correlated
187 L1PA8 7 n.s 74.0 Weakly correlated
188 LTR17 7 ** 28.9 Weakly correlated
189 LTR41B 7 *** 99.0 Highly correlated
190 MER21C 7 n.s 99.0 Highly correlated
191 MER4-int 7 n.s 74.0 Weakly correlated
192 MER83 7 **** 43.0 Weakly correlated
193 MLT1G1 7 n.s 99.0 Highly correlated
194 MLT1H1 7 n.s 99.0 Highly correlated
195 MLT1J-int 7 ** 99.0 Highly correlated
196 AluYh9 6 **** 15.2 Weakly correlated
197 HAL1b 6 n.s 99.0 Highly correlated
198 HERVE_a-int 6 ** 28.9 Weakly correlated
199 LTR21A 6 **** 28.9 Weakly correlated
200 LTR27D 6 **** 43.0 Weakly correlated
201 LTR2B 6 **** 19.6 Weakly correlated
202 LTR3 6 **** 28.9 Weakly correlated
203 LTR50 6 n.s 99.0 Highly correlated
204 LTR76 6 **** 74.0 Weakly correlated
205 MER34A 6 ** 99.0 Highly correlated
206 MER76 6 ** 99.0 Highly correlated
207 MLT1A 6 n.s 99.0 Highly correlated
208 MLT1F1 6 n.s 99.0 Highly correlated
209 MSTD 6 n.s 74.0 Weakly correlated
210 THE1B-int 6 n.s 43.0 Weakly correlated
211 Alu 5 ** 74.0 Weakly correlated
212 AluSc5 5 n.s 74.0 Weakly correlated
213 AluYk11 5 **** 15.2 Weakly correlated
214 L1M2c 5 * 87.0 Weakly correlated
215 L1P4e 5 *** 74.0 Weakly correlated
216 L1PA12 5 n.s 74.0 Weakly correlated
217 LTR16A1 5 n.s 99.0 Highly correlated
218 LTR16B2 5 n.s 99.0 Highly correlated
219 LTR16E2 5 n.s 99.0 Highly correlated
220 LTR7 5 n.s 19.6 Weakly correlated
221 LTR78 5 n.s 99.0 Highly correlated
222 LTR78B 5 n.s 99.0 Highly correlated
223 LTR79 5 n.s 99.0 Highly correlated
224 MER39 5 n.s 74.0 Weakly correlated
225 MER4A1 5 n.s 74.0 Weakly correlated
226 MLT1E1A 5 n.s 99.0 Highly correlated
227 MLT1H-int 5 ** 99.0 Highly correlated
228 MLT1O 5 n.s 99.0 Highly correlated
229 MLT2B3 5 n.s 99.0 Highly correlated
230 AluSg7 4 n.s 74.0 Weakly correlated
231 HERVK-int 4 n.s 28.9 Weakly correlated
232 L1M2a1 4 *** 79.0 Weakly correlated
233 L1M7 4 n.s 99.0 Highly correlated
234 L1MC 4 n.s 99.0 Highly correlated
235 L1MCc 4 n.s 99.0 Highly correlated
236 L1MDb 4 n.s 99.0 Highly correlated
237 L1ME2z 4 n.s 99.0 Highly correlated
238 L1ME3F 4 n.s 99.0 Highly correlated
239 L1ME4c 4 n.s 99.0 Highly correlated
240 L1ME5 4 n.s 99.0 Highly correlated
241 L1MEi 4 n.s 99.0 Highly correlated
242 L1P1 4 n.s 19.6 Weakly correlated
243 L1PBb 4 n.s 74.0 Weakly correlated
244 LTR104_Mam 4 n.s 99.0 Highly correlated
245 LTR10F 4 ** 28.9 Weakly correlated
246 LTR12F 4 * 28.9 Weakly correlated
247 LTR15 4 *** 28.9 Weakly correlated
248 LTR16D 4 * 99.0 Highly correlated
249 LTR1A1 4 * 43.0 Weakly correlated
250 LTR1B1 4 *** 43.0 Weakly correlated
251 LTR36 4 ** 74.0 Weakly correlated
252 LTR37A 4 n.s 99.0 Highly correlated
253 LTR41 4 n.s 99.0 Highly correlated
254 LTR49-int 4 n.s 74.0 Weakly correlated
255 LTR56 4 * 74.0 Weakly correlated
256 LTR60 4 **** 43.0 Weakly correlated
257 LTR81A 4 ** 99.0 Highly correlated
258 MER21A 4 n.s 74.0 Weakly correlated
259 MER41B 4 n.s 74.0 Weakly correlated
260 MER50-int 4 n.s 43.0 Weakly correlated
261 MER67B 4 ** 99.0 Highly correlated
262 MER70B 4 * 87.0 Weakly correlated
263 MER74C 4 **** 99.0 Highly correlated
264 MER77B 4 n.s 99.0 Highly correlated
265 MER84-int 4 *** 74.0 Weakly correlated
266 MLT1A0-int 4 n.s 99.0 Highly correlated
267 MLT2A2 4 n.s 74.0 Weakly correlated
268 MLT2B1 4 n.s 99.0 Highly correlated
269 MLT2F 4 n.s 99.0 Highly correlated
270 MamGypLTR2c 4 ** 99.0 Highly correlated
271 MamGypLTR3 4 ** 99.0 Highly correlated
272 MamGypLTR3a 4 * 99.0 Highly correlated
273 MamRep605 4 n.s 99.0 Highly correlated
274 AluSx4 3 n.s 74.0 Weakly correlated
275 AluYa8 3 *** 15.2 Weakly correlated
276 AmnSINE2 3 *** 319.0 Weakly correlated
277 ERVL-B4-int 3 n.s 99.0 Highly correlated
278 HERV1_LTRe 3 **** 43.0 Weakly correlated
279 HUERS-P3b-int 3 n.s 43.0 Weakly correlated
280 L1M3a 3 n.s 99.0 Highly correlated
281 L1M3f 3 n.s 87.0 Weakly correlated
282 L1MD3 3 n.s 99.0 Highly correlated
283 L1ME3B 3 n.s 99.0 Highly correlated
284 L1MEj 3 n.s 99.0 Highly correlated
285 L1P2 3 n.s 28.9 Weakly correlated
286 L1P4d 3 ** 74.0 Weakly correlated
287 L1PA2 3 n.s 15.2 Weakly correlated
288 L1PA3 3 n.s 19.6 Weakly correlated
289 L1PA4 3 n.s 19.6 Weakly correlated
290 L2-1_AMi 3 * 319.0 Weakly correlated
291 LFSINE_Vert 3 n.s 319.0 Weakly correlated
292 LOR1-int 3 n.s 74.0 Weakly correlated
293 LTR18B 3 * 43.0 Weakly correlated
294 LTR1E 3 * 43.0 Weakly correlated
295 LTR1F 3 ** 43.0 Weakly correlated
296 LTR22B1 3 *** 28.9 Weakly correlated
297 LTR2752 3 * 43.0 Weakly correlated
298 LTR27E 3 * 43.0 Weakly correlated
299 LTR28C 3 * 43.0 Weakly correlated
300 LTR41C 3 * 99.0 Highly correlated
301 LTR43 3 * 74.0 Weakly correlated
302 LTR65 3 ** 99.0 Highly correlated
303 LTR67B 3 n.s 99.0 Highly correlated
304 LTR73 3 ** 99.0 Highly correlated
305 LTR75B 3 *** 99.0 Highly correlated
306 LTR82A 3 n.s 99.0 Highly correlated
307 LTR82B 3 n.s 99.0 Highly correlated
308 LTR85b 3 * 99.0 Highly correlated
309 LTR8B 3 n.s 43.0 Weakly correlated
310 LTR9B 3 n.s 43.0 Weakly correlated
311 MER34 3 n.s 87.0 Weakly correlated
312 MER49 3 n.s 43.0 Weakly correlated
313 MER4CL34 3 n.s 43.0 Weakly correlated
314 MER51A 3 n.s 43.0 Weakly correlated
315 MER54B 3 * 87.0 Weakly correlated
316 MER61F 3 *** 43.0 Weakly correlated
317 MER65A 3 n.s 74.0 Weakly correlated
318 MER70C 3 ** 99.0 Highly correlated
319 MLT2D 3 n.s 99.0 Highly correlated
320 AluSg4 2 n.s 74.0 Weakly correlated
321 AluYc 2 n.s 74.0 Weakly correlated
322 AmnSINE1 2 n.s 319.0 Weakly correlated
323 ERV24_Prim-int 2 n.s 74.0 Weakly correlated
324 ERVL-int 2 n.s 99.0 Highly correlated
325 HAL1ME 2 n.s 99.0 Highly correlated
326 HERV16-int 2 n.s 99.0 Highly correlated
327 HERV17-int 2 n.s 28.9 Weakly correlated
328 HERV1_LTRd 2 **** 43.0 Weakly correlated
329 HERV3-int 2 n.s 28.9 Weakly correlated
330 HERVH-int 2 n.s 28.9 Weakly correlated
331 HERVIP10B3-int 2 n.s 28.9 Weakly correlated
332 HERVK22-int 2 n.s 43.0 Weakly correlated
333 HERVP71A-int 2 n.s 43.0 Weakly correlated
334 HERVS71-int 2 n.s 28.9 Weakly correlated
335 HUERS-P3-int 2 n.s 43.0 Weakly correlated
336 L1M4a2 2 n.s 99.0 Highly correlated
337 L1MC5 2 n.s 99.0 Highly correlated
338 L1MCb 2 n.s 99.0 Highly correlated
339 L1MEh 2 n.s 99.0 Highly correlated
340 L1P4 2 n.s 74.0 Weakly correlated
341 L4_B_Mam 2 n.s 99.0 Highly correlated
342 LTR1 2 n.s 43.0 Weakly correlated
343 LTR103_Mam 2 * 99.0 Highly correlated
344 LTR13A 2 n.s 28.9 Weakly correlated
345 LTR16A2 2 n.s 99.0 Highly correlated
346 LTR16B 2 n.s 99.0 Highly correlated
347 LTR19A 2 n.s 43.0 Weakly correlated
348 LTR22 2 ** 28.9 Weakly correlated
349 LTR22E 2 ** 28.9 Weakly correlated
350 LTR23 2 n.s 74.0 Weakly correlated
351 LTR24 2 * 74.0 Weakly correlated
352 LTR25 2 * 43.0 Weakly correlated
353 LTR25-int 2 n.s 43.0 Weakly correlated
354 LTR31 2 * 74.0 Weakly correlated
355 LTR33C 2 n.s 99.0 Highly correlated
356 LTR40b 2 n.s 99.0 Highly correlated
357 LTR45C 2 n.s 99.0 Highly correlated
358 LTR46 2 * 43.0 Weakly correlated
359 LTR47A2 2 ** 74.0 Weakly correlated
360 LTR6A 2 n.s 28.9 Weakly correlated
361 LTR75_1 2 ** 99.0 Highly correlated
362 LTR7C 2 * 28.9 Weakly correlated
363 LTR84b 2 n.s 99.0 Highly correlated
364 LTR87 2 n.s 99.0 Highly correlated
365 LTR88b 2 n.s 99.0 Highly correlated
366 LTR88c 2 n.s 99.0 Highly correlated
367 LTR8A 2 n.s 43.0 Weakly correlated
368 LTR9 2 n.s 43.0 Weakly correlated
369 LTR9A1 2 n.s 43.0 Weakly correlated
370 MER11D 2 n.s 19.6 Weakly correlated
371 MER21B 2 n.s 99.0 Highly correlated
372 MER31A 2 n.s 87.0 Weakly correlated
373 MER31B 2 n.s 99.0 Highly correlated
374 MER34D 2 * 74.0 Weakly correlated
375 MER39B 2 n.s 74.0 Weakly correlated
376 MER41E 2 * 74.0 Weakly correlated
377 MER4E1 2 n.s 74.0 Weakly correlated
378 MER50B 2 n.s 43.0 Weakly correlated
379 MER51E 2 ** 43.0 Weakly correlated
380 MER52C 2 n.s 74.0 Weakly correlated
381 MER61A 2 n.s 43.0 Weakly correlated
382 MER61B 2 * 43.0 Weakly correlated
383 MER66-int 2 n.s 43.0 Weakly correlated
384 MER66C 2 n.s 43.0 Weakly correlated
385 MER68 2 n.s 99.0 Highly correlated
386 MER72 2 n.s 43.0 Weakly correlated
387 MER76-int 2 ** 99.0 Highly correlated
388 MER87 2 ** 43.0 Weakly correlated
389 MER89 2 n.s 99.0 Highly correlated
390 MLT1A1-int 2 n.s 87.0 Weakly correlated
391 MLT1F2-int 2 * 99.0 Highly correlated
392 MLT1H1-int 2 n.s 99.0 Highly correlated
393 MLT1J2-int 2 n.s 99.0 Highly correlated
394 MLT2C1 2 n.s 99.0 Highly correlated
395 MLT2C2 2 n.s 99.0 Highly correlated
396 MamGypLTR2b 2 n.s 99.0 Highly correlated
397 MamRep1151 2 n.s 99.0 Highly correlated
398 MamRep1527 2 n.s 99.0 Highly correlated
399 MamSINE1 2 n.s 99.0 Highly correlated
400 PRIMA41-int 2 n.s 74.0 Weakly correlated
401 SVA_E 2 n.s 0.0 Weakly correlated
402 THE1A 2 n.s 43.0 Weakly correlated
403 X9_LINE 2 ** 319.0 Weakly correlated
404 AluSq10 1 n.s 74.0 Weakly correlated
405 AluSq4 1 n.s 74.0 Weakly correlated
406 AluYe5 1 n.s 74.0 Weakly correlated
407 AluYf1 1 n.s 19.6 Weakly correlated
408 AluYg6 1 n.s 15.2 Weakly correlated
409 AluYh3a3 1 n.s 15.2 Weakly correlated
410 AluYk3 1 n.s 19.6 Weakly correlated
411 AluYm1 1 n.s 19.6 Weakly correlated
412 CR1-3_Croc 1 n.s 319.0 Weakly correlated
413 FAM 1 n.s 87.0 Weakly correlated
414 HERV15-int 1 n.s 28.9 Weakly correlated
415 HERV1_I-int 1 n.s 43.0 Weakly correlated
416 HERV1_LTRc 1 ** 28.9 Weakly correlated
417 HERV35I-int 1 n.s 43.0 Weakly correlated
418 HERVI-int 1 n.s 28.9 Weakly correlated
419 HERVK14C-int 1 n.s 28.9 Weakly correlated
420 HERVL40-int 1 n.s 99.0 Highly correlated
421 HERVL66-int 1 n.s 43.0 Weakly correlated
422 L1HS 1 n.s 8.6 Weakly correlated
423 L1M3de 1 n.s 99.0 Highly correlated
424 L1M6 1 n.s 99.0 Highly correlated
425 L1M6B 1 n.s 99.0 Highly correlated
426 L1MA10 1 n.s 99.0 Highly correlated
427 L1MC5a 1 n.s 99.0 Highly correlated
428 L1MEb 1 n.s 99.0 Highly correlated
429 L1MEg2 1 n.s 99.0 Highly correlated
430 L1P3b 1 * 43.0 Weakly correlated
431 L1P4a 1 n.s 74.0 Weakly correlated
432 L1PB 1 n.s 74.0 Weakly correlated
433 L1PB2 1 n.s 74.0 Weakly correlated
434 L1PBa1 1 n.s 74.0 Weakly correlated
435 L2-3_Crp 1 n.s 431.0 Weakly correlated
436 L4_C_Mam 1 n.s 99.0 Highly correlated
437 LOR1a 1 n.s 74.0 Weakly correlated
438 LOR1b 1 n.s 74.0 Weakly correlated
439 LTR101_Mam 1 n.s 99.0 Highly correlated
440 LTR12 1 n.s 28.9 Weakly correlated
441 LTR12E 1 n.s 19.6 Weakly correlated
442 LTR12_ 1 n.s 28.9 Weakly correlated
443 LTR13 1 n.s 19.6 Weakly correlated
444 LTR14 1 * 28.9 Weakly correlated
445 LTR14C 1 n.s 28.9 Weakly correlated
446 LTR18A 1 * 43.0 Weakly correlated
447 LTR19-int 1 n.s 43.0 Weakly correlated
448 LTR1A2 1 n.s 43.0 Weakly correlated
449 LTR1B 1 n.s 43.0 Weakly correlated
450 LTR1B0 1 * 43.0 Weakly correlated
451 LTR1C1 1 * 43.0 Weakly correlated
452 LTR28 1 n.s 43.0 Weakly correlated
453 LTR2C 1 n.s 19.6 Weakly correlated
454 LTR32 1 n.s 43.0 Weakly correlated
455 LTR33A 1 n.s 99.0 Highly correlated
456 LTR33B 1 n.s 99.0 Highly correlated
457 LTR34 1 n.s 74.0 Weakly correlated
458 LTR37B 1 n.s 99.0 Highly correlated
459 LTR3A 1 n.s 28.9 Weakly correlated
460 LTR40A1 1 n.s 99.0 Highly correlated
461 LTR40c 1 n.s 99.0 Highly correlated
462 LTR43B 1 n.s 74.0 Weakly correlated
463 LTR44 1 n.s 74.0 Weakly correlated
464 LTR47A 1 n.s 74.0 Weakly correlated
465 LTR48B 1 n.s 74.0 Weakly correlated
466 LTR49 1 n.s 74.0 Weakly correlated
467 LTR52 1 n.s 99.0 Highly correlated
468 LTR53-int 1 n.s 99.0 Highly correlated
469 LTR57-int 1 n.s 74.0 Weakly correlated
470 LTR68 1 n.s 99.0 Highly correlated
471 LTR75 1 n.s 99.0 Highly correlated
472 LTR77 1 * 94.0 Weakly correlated
473 LTR81B 1 n.s 99.0 Highly correlated
474 LTR84a 1 n.s 99.0 Highly correlated
475 LTR85a 1 n.s 99.0 Highly correlated
476 LTR85c 1 n.s 99.0 Highly correlated
477 LTR86C 1 n.s 99.0 Highly correlated
478 LTR88a 1 n.s 99.0 Highly correlated
479 LTR9D 1 n.s 43.0 Weakly correlated
480 MER101-int 1 n.s 74.0 Weakly correlated
481 MER11C 1 n.s 19.6 Weakly correlated
482 MER21-int 1 n.s 99.0 Highly correlated
483 MER34-int 1 n.s 99.0 Highly correlated
484 MER34A1 1 n.s 99.0 Highly correlated
485 MER34C2 1 n.s 74.0 Weakly correlated
486 MER41C 1 n.s 74.0 Weakly correlated
487 MER4A 1 n.s 74.0 Weakly correlated
488 MER4A1_ 1 n.s 74.0 Weakly correlated
489 MER4C 1 n.s 74.0 Weakly correlated
490 MER4D 1 n.s 74.0 Weakly correlated
491 MER4E 1 n.s 74.0 Weakly correlated
492 MER50C 1 * 43.0 Weakly correlated
493 MER51D 1 * 43.0 Weakly correlated
494 MER57A-int 1 n.s 43.0 Weakly correlated
495 MER61-int 1 n.s 43.0 Weakly correlated
496 MER61C 1 n.s 43.0 Weakly correlated
497 MER65-int 1 n.s 87.0 Weakly correlated
498 MER65C 1 n.s 74.0 Weakly correlated
499 MER65D 1 n.s 87.0 Weakly correlated
500 MER66D 1 n.s 43.0 Weakly correlated
501 MER70A 1 n.s 87.0 Weakly correlated
502 MER72B 1 n.s 43.0 Weakly correlated
503 MER73 1 n.s 87.0 Weakly correlated
504 MER77 1 n.s 99.0 Highly correlated
505 MER83C 1 * 43.0 Weakly correlated
506 MER84 1 n.s 43.0 Weakly correlated
507 MER87B 1 n.s 74.0 Weakly correlated
508 MER90a 1 n.s 99.0 Highly correlated
509 MER92B 1 n.s 99.0 Highly correlated
510 MLT-int 1 n.s 99.0 Highly correlated
511 MLT1A-int 1 n.s 99.0 Highly correlated
512 MLT1B-int 1 n.s 99.0 Highly correlated
513 MLT1E 1 n.s 99.0 Highly correlated
514 MLT1E1 1 n.s 99.0 Highly correlated
515 MLT1E3-int 1 * 99.0 Highly correlated
516 MLT1F-int 1 n.s 99.0 Highly correlated
517 MLT1G1-int 1 n.s 99.0 Highly correlated
518 MLT1M 1 n.s 99.0 Highly correlated
519 MLT1O-int 1 *** 99.0 Highly correlated
520 MLT2A1 1 n.s 74.0 Weakly correlated
521 MLT2B5 1 n.s 87.0 Weakly correlated
522 MST-int 1 n.s 74.0 Weakly correlated
523 MSTB1-int 1 n.s 74.0 Weakly correlated
524 MSTB2-int 1 n.s 74.0 Weakly correlated
525 MSTC 1 n.s 74.0 Weakly correlated
526 MSTD-int 1 n.s 74.0 Weakly correlated
527 MamGypsy2-I 1 n.s 99.0 Highly correlated
528 PABL_A 1 n.s 43.0 Weakly correlated
529 PABL_A-int 1 n.s 74.0 Weakly correlated
530 THE1-int 1 n.s 43.0 Weakly correlated
531 THE1A-int 1 n.s 43.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L2a 10 n.s 99.0 Highly correlated
2 HERVL-int 9 n.s 74.0 Weakly correlated
3 THE1C 7 n.s 43.0 Weakly correlated
4 MIRb 7 n.s 99.0 Highly correlated
5 L2c 6 n.s 99.0 Highly correlated
6 L1PA15-16 4 n.s 74.0 Weakly correlated
7 AluJb 4 n.s 74.0 Weakly correlated
8 L2b 3 n.s 99.0 Highly correlated
9 MSTA 3 n.s 43.0 Weakly correlated
10 MER54A 3 n.s 87.0 Weakly correlated
11 L1PREC2 2 n.s 43.0 Weakly correlated
12 MER67C 2 n.s 99.0 Highly correlated
13 MIRc 2 n.s 99.0 Highly correlated
14 L1MEf 2 n.s 99.0 Highly correlated
15 AluSz 2 n.s 74.0 Weakly correlated
16 L1M1 2 n.s 74.0 Weakly correlated
17 L1ME1 2 n.s 99.0 Highly correlated
18 ERV3-16A3_LTR 2 n.s 99.0 Highly correlated
19 LTR19C 2 ** 43.0 Weakly correlated
20 L1M2 2 n.s 99.0 Highly correlated
21 L1MA3 2 n.s 74.0 Weakly correlated
22 MLT1G3 2 n.s 99.0 Highly correlated
23 L1MA4A 2 n.s 87.0 Weakly correlated
24 L1MB3 2 n.s 99.0 Highly correlated
25 L1MB5 2 n.s 99.0 Highly correlated
26 L1MEd 2 n.s 99.0 Highly correlated
27 L2 2 n.s 99.0 Highly correlated
28 L1PA7 2 n.s 74.0 Weakly correlated
29 L1PA5 2 n.s 19.6 Weakly correlated
30 L1M2a1 2 * 79.0 Weakly correlated
31 L1MEg 2 n.s 99.0 Highly correlated
32 L1MB7 1 n.s 99.0 Highly correlated
33 MLT1D 1 n.s 99.0 Highly correlated
34 MER52A 1 n.s 74.0 Weakly correlated
35 LTR33A_ 1 n.s 99.0 Highly correlated
36 MER67D 1 n.s 99.0 Highly correlated
37 MER76 1 n.s 99.0 Highly correlated
38 L1MD2 1 n.s 99.0 Highly correlated
39 L1MC3 1 n.s 99.0 Highly correlated
40 ERV3-16A3_I-int 1 n.s 99.0 Highly correlated
41 MLT1J-int 1 n.s 99.0 Highly correlated
42 MLT1N2 1 n.s 99.0 Highly correlated
43 L1MB2 1 n.s 99.0 Highly correlated
44 HERV15-int 1 n.s 28.9 Weakly correlated
45 HERVK22-int 1 n.s 43.0 Weakly correlated
46 MLT2F 1 n.s 99.0 Highly correlated
47 MER34A 1 n.s 99.0 Highly correlated
48 LOR1-int 1 n.s 74.0 Weakly correlated
49 HERVK-int 1 n.s 28.9 Weakly correlated
50 MamRTE1 1 n.s 99.0 Highly correlated
51 MLT1J2 1 n.s 99.0 Highly correlated
52 MLT1E3 1 n.s 99.0 Highly correlated
53 MLT1B 1 n.s 99.0 Highly correlated
54 L1M2b 1 n.s 87.0 Weakly correlated
55 LTR55 1 n.s 99.0 Highly correlated
56 LTR16B2 1 n.s 99.0 Highly correlated
57 MER49 1 n.s 43.0 Weakly correlated
58 L1PB4 1 n.s 99.0 Highly correlated
59 L1M4c 1 n.s 99.0 Highly correlated
60 L1MA9 1 n.s 99.0 Highly correlated
61 L1ME3 1 n.s 99.0 Highly correlated
62 L1M2c 1 n.s 87.0 Weakly correlated
63 HERV1_LTRd 1 *** 43.0 Weakly correlated
64 LTR45C 1 n.s 99.0 Highly correlated
65 LTR3 1 * 28.9 Weakly correlated
66 AluSz6 1 n.s 74.0 Weakly correlated
67 L1M4b 1 n.s 99.0 Highly correlated
68 MSTB1 1 n.s 74.0 Weakly correlated
69 MSTB 1 n.s 43.0 Weakly correlated
70 L1MA5 1 n.s 87.0 Weakly correlated
71 MER50-int 1 n.s 43.0 Weakly correlated
72 LTR82B 1 n.s 99.0 Highly correlated
73 LTR41C 1 n.s 99.0 Highly correlated
74 L1M3e 1 n.s 99.0 Highly correlated
75 MER61A 1 n.s 43.0 Weakly correlated
76 L1PA16 1 n.s 74.0 Weakly correlated
77 L1PA13 1 n.s 74.0 Weakly correlated
78 MIR3 1 n.s 99.0 Highly correlated
79 L1MA6 1 n.s 87.0 Weakly correlated
80 MSTA-int 1 n.s 43.0 Weakly correlated
81 AluY 1 n.s 74.0 Weakly correlated
82 LTR84b 1 n.s 99.0 Highly correlated
83 L1MB4 1 n.s 99.0 Highly correlated
84 MLT1O 1 n.s 99.0 Highly correlated
85 MLT1H1 1 n.s 99.0 Highly correlated
86 MLT1C 1 n.s 94.0 Weakly correlated
87 LTR62 1 n.s 74.0 Weakly correlated
88 MER83 1 n.s 43.0 Weakly correlated
89 MER34 1 n.s 87.0 Weakly correlated
90 MLT1G1 1 n.s 99.0 Highly correlated
91 MSTB2 1 n.s 74.0 Weakly correlated
92 PABL_A-int 1 n.s 74.0 Weakly correlated
93 LTR27D 1 n.s 43.0 Weakly correlated
94 LTR1D1 1 n.s 43.0 Weakly correlated
95 L1PBb 1 n.s 74.0 Weakly correlated
96 LTR12C 1 n.s 19.6 Weakly correlated
97 AluSx1 1 n.s 74.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 THE1C 43.0 Weakly correlated