ZRdb KZFP & Repeats
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Human_ZNF257

  • Protein
    Zinc finger protein 257
  • Length
    563
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    0.0 Mya
  • Time of Changing in binding specificity
    0.0 Mya
  • Uniprot_ID
    Q9Y2Q1
  • NCBI_ID
    113835
Sequence:
MGPLTIRDVTVEFSLEEWHCLDTAQQNLYRDVMLENYRNLVFLGIAVSKPDLITCLEQGKEPCNMKRHEMVAKPPVMCSHIAEDLCPERDIKYFFQKVILRRYDKCEHENLQLRKGCKSVDECKVCKGGYNGLNQCLITTQSKMYQCDKYVKVFYKFSNSDRHKIRHTEKKTCKCKECGKSFCMLSQLTRHKRIHIRENSHKCEECGKAFNQSSALTRHKMTHTGEKPYKCEECGKAFNRSSHLTQHKVIHTREKPYKCEECGKAFNRSSHITQHKRIHNREKPFKYDECCKAFKWSSALTTLTQHKRIHTGEKPYKCEECGKAFNQSSALTRHKMIHTGEKPFQCEECGKAFNRSSHLTQHKIIHTKEKPYKCEECGKAFNRSSHLTKHKRIHTREKAYKCDEYCKAFNWSSALTTLTQHKIIHTGEKPYKCEECGKAFNRSSYLIRHKIIHTGEKPYKCEECGKAFNQSSHLTQHKIIHTGEKPYKCEECGKAFNRSSHLSQHKIIHTGEKPYKCEECGKPFNRFSYLTVHKRIHAGENPNKYEECGKACNHSSNLTKHNS
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 4..75
2 C2h2 173..195
3 C2h2 201..223
4 C2h2 229..251
5 C2h2 257..279
6 dec2h2 285..310
7 C2h2 316..338
8 C2h2 344..366
9 C2h2 372..394
10 dec2h2 400..425
11 C2h2 431..453
12 C2h2 459..481
13 C2h2 487..509
14 C2h2 515..537
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Biological Process regulation of DNA-templated transcription
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 AluY 795 **** 74.0 Weakly correlated
2 L2a 790 **** 99.0 Weakly correlated
3 AluJb 780 **** 74.0 Weakly correlated
4 AluSx1 633 **** 74.0 Weakly correlated
5 AluSx 613 **** 74.0 Weakly correlated
6 AluSz 567 **** 74.0 Weakly correlated
7 AluJr 519 **** 74.0 Weakly correlated
8 L2c 488 **** 99.0 Weakly correlated
9 AluJo 458 **** 74.0 Weakly correlated
10 L2b 427 **** 99.0 Weakly correlated
11 L2 353 **** 99.0 Weakly correlated
12 MIRb 314 n.s 99.0 Weakly correlated
13 AluSz6 294 **** 74.0 Weakly correlated
14 AluSq2 260 **** 74.0 Weakly correlated
15 MIR3 197 **** 99.0 Weakly correlated
16 AluSp 192 **** 74.0 Weakly correlated
17 MIR 191 n.s 99.0 Weakly correlated
18 AluSg 179 **** 74.0 Weakly correlated
19 AluSc 171 **** 74.0 Weakly correlated
20 AluSx3 164 **** 74.0 Weakly correlated
21 MIRc 148 ** 99.0 Weakly correlated
22 HERVH-int 145 **** 28.9 Weakly correlated
23 MLT1C 145 **** 94.0 Weakly correlated
24 AluSc8 133 **** 74.0 Weakly correlated
25 AluJr4 126 **** 74.0 Weakly correlated
26 LTR13 124 **** 19.6 Weakly correlated
27 SVA_A 113 **** 19.6 Weakly correlated
28 AluSq 108 **** 74.0 Weakly correlated
29 L3 85 n.s 99.0 Weakly correlated
30 MLT1D 83 * 99.0 Weakly correlated
31 FLAM_C 82 **** 74.0 Weakly correlated
32 MLT1B 73 *** 99.0 Weakly correlated
33 MLT1K 70 **** 99.0 Weakly correlated
34 L1MEc 62 n.s 99.0 Weakly correlated
35 MLT1A0 61 n.s 99.0 Weakly correlated
36 L1M5 55 n.s 99.0 Weakly correlated
37 L1ME1 55 n.s 99.0 Weakly correlated
38 HAL1 54 n.s 99.0 Weakly correlated
39 HERV9NC-int 53 **** 19.6 Weakly correlated
40 HERVL-int 49 ** 74.0 Weakly correlated
41 L1MB7 48 n.s 99.0 Weakly correlated
42 LTR33 44 **** 99.0 Weakly correlated
43 AluSc5 43 **** 74.0 Weakly correlated
44 FLAM_A 40 **** 74.0 Weakly correlated
45 MSTA 40 n.s 43.0 Weakly correlated
46 MLT1J 39 n.s 99.0 Weakly correlated
47 MSTB 39 ** 43.0 Weakly correlated
48 L1MC4 38 n.s 99.0 Weakly correlated
49 MSTB1 37 **** 74.0 Weakly correlated
50 AluSg4 36 *** 74.0 Weakly correlated
51 AluYc 36 **** 74.0 Weakly correlated
52 L1MB3 36 n.s 99.0 Weakly correlated
53 L1MB8 36 n.s 99.0 Weakly correlated
54 L1MEd 36 n.s 99.0 Weakly correlated
55 MLT1A 36 ** 99.0 Weakly correlated
56 FRAM 35 **** 74.0 Weakly correlated
57 L1PB1 35 n.s 74.0 Weakly correlated
58 LTR16A1 35 **** 99.0 Weakly correlated
59 LTR78 32 **** 99.0 Weakly correlated
60 MER21C 32 * 99.0 Weakly correlated
61 HERV9-int 31 **** 28.9 Weakly correlated
62 HERVE-int 31 **** 19.6 Weakly correlated
63 L1ME4b 31 n.s 99.0 Weakly correlated
64 MIR1_Amn 31 **** 319.0 Weakly correlated
65 MLT1F 31 **** 99.0 Weakly correlated
66 AluYj4 30 **** 0.0 Highly correlated
67 L1M4 29 n.s 99.0 Weakly correlated
68 ERV3-16A3_I-int 27 n.s 99.0 Weakly correlated
69 SVA_D 27 * 15.2 Weakly correlated
70 AluSg7 26 n.s 74.0 Weakly correlated
71 L1ME2 26 n.s 99.0 Weakly correlated
72 LTR16E1 26 **** 99.0 Weakly correlated
73 MLT1H 26 n.s 99.0 Weakly correlated
74 SVA_B 26 **** 15.2 Weakly correlated
75 AluYm1 25 ** 19.6 Weakly correlated
76 MSTD 25 n.s 74.0 Weakly correlated
77 THE1A 25 *** 43.0 Weakly correlated
78 AluSx4 24 n.s 74.0 Weakly correlated
79 AluYh3 24 **** 15.2 Weakly correlated
80 HERV9N-int 24 **** 19.6 Weakly correlated
81 L1MC5 24 n.s 99.0 Weakly correlated
82 L1ME3A 24 n.s 99.0 Weakly correlated
83 MER39 24 **** 74.0 Weakly correlated
84 MamRTE1 24 *** 99.0 Weakly correlated
85 MLT1G1 23 *** 99.0 Weakly correlated
86 MLT1G3 23 **** 99.0 Weakly correlated
87 FAM 22 **** 87.0 Weakly correlated
88 LTR16 22 **** 99.0 Weakly correlated
89 AluYf1 21 **** 19.6 Weakly correlated
90 L1MD2 21 n.s 99.0 Weakly correlated
91 LTR16C 21 n.s 99.0 Weakly correlated
92 AluYe5 20 **** 74.0 Weakly correlated
93 L1MC3 20 n.s 99.0 Weakly correlated
94 L1MC5a 20 n.s 99.0 Weakly correlated
95 L1ME3G 20 n.s 99.0 Weakly correlated
96 L1MEf 20 n.s 99.0 Weakly correlated
97 THE1B 20 n.s 43.0 Weakly correlated
98 Alu 19 **** 74.0 Weakly correlated
99 ERVL-E-int 19 n.s 99.0 Weakly correlated
100 L1M1 19 n.s 74.0 Weakly correlated
101 MLT1J2 19 n.s 99.0 Weakly correlated
102 MLT1L 19 n.s 99.0 Weakly correlated
103 L1MC4a 18 n.s 99.0 Weakly correlated
104 L1MEg 18 n.s 99.0 Weakly correlated
105 LTR16E2 18 **** 99.0 Weakly correlated
106 LTR3A 18 **** 28.9 Weakly correlated
107 MER50 18 ** 43.0 Weakly correlated
108 MLT1O 18 *** 99.0 Weakly correlated
109 THE1D 18 n.s 43.0 Weakly correlated
110 L1MA9 17 n.s 99.0 Weakly correlated
111 L1PA16 17 n.s 74.0 Weakly correlated
112 L1M2 16 n.s 99.0 Weakly correlated
113 L1MA4 16 n.s 87.0 Weakly correlated
114 L1ME2z 16 n.s 99.0 Weakly correlated
115 L1ME3Cz 16 n.s 99.0 Weakly correlated
116 L1ME4a 16 n.s 99.0 Weakly correlated
117 LTR16A 16 n.s 99.0 Weakly correlated
118 MLT1N2 16 * 99.0 Weakly correlated
119 L1M4b 15 n.s 99.0 Weakly correlated
120 MER74A 15 *** 99.0 Weakly correlated
121 MLT1F2 15 n.s 99.0 Weakly correlated
122 AluSq10 14 **** 74.0 Weakly correlated
123 L1MA3 14 n.s 74.0 Weakly correlated
124 LTR16A2 14 **** 99.0 Weakly correlated
125 MLT1F1 14 * 99.0 Weakly correlated
126 L1PREC2 13 n.s 43.0 Weakly correlated
127 LTR78B 13 ** 99.0 Weakly correlated
128 MLT1I 13 n.s 99.0 Weakly correlated
129 HAL1ME 12 n.s 99.0 Weakly correlated
130 HERVIP10FH-int 12 **** 28.9 Weakly correlated
131 LTR10A 12 **** 28.9 Weakly correlated
132 LTR12C 12 n.s 19.6 Weakly correlated
133 LTR2C 12 **** 19.6 Weakly correlated
134 MLT1A1 12 n.s 87.0 Weakly correlated
135 MLT1G 12 n.s 99.0 Weakly correlated
136 SVA_F 12 * 0.0 Highly correlated
137 THE1C 12 n.s 43.0 Weakly correlated
138 L1MB2 11 n.s 99.0 Weakly correlated
139 L1ME3 11 n.s 99.0 Weakly correlated
140 L1PA13 11 n.s 74.0 Weakly correlated
141 LTR13A 11 **** 28.9 Weakly correlated
142 MLT2F 11 * 99.0 Weakly correlated
143 SVA_C 11 ** 15.2 Weakly correlated
144 AluYk3 10 *** 19.6 Weakly correlated
145 L1MC1 10 n.s 99.0 Weakly correlated
146 L1PA7 10 n.s 74.0 Weakly correlated
147 L1PBa 10 n.s 74.0 Weakly correlated
148 LTR79 10 n.s 99.0 Weakly correlated
149 MLT1M 10 *** 99.0 Weakly correlated
150 HERVIP10F-int 9 * 28.9 Weakly correlated
151 L1MA1 9 n.s 74.0 Weakly correlated
152 L1MA2 9 n.s 74.0 Weakly correlated
153 L1MB4 9 n.s 99.0 Weakly correlated
154 L1MC2 9 n.s 99.0 Weakly correlated
155 L1MCc 9 n.s 99.0 Weakly correlated
156 L1ME3B 9 n.s 99.0 Weakly correlated
157 L1MEh 9 n.s 99.0 Weakly correlated
158 L1MEi 9 n.s 99.0 Weakly correlated
159 L3b 9 n.s 99.0 Weakly correlated
160 LTR33A 9 * 99.0 Weakly correlated
161 LTR67B 9 n.s 99.0 Weakly correlated
162 MER4CL34 9 ** 43.0 Weakly correlated
163 MLT1E1A 9 n.s 99.0 Weakly correlated
164 MLT1H2 9 n.s 99.0 Weakly correlated
165 MLT1J1 9 n.s 99.0 Weakly correlated
166 MLT2A2 9 n.s 74.0 Weakly correlated
167 THE1B-int 9 n.s 43.0 Weakly correlated
168 AluSq4 8 n.s 74.0 Weakly correlated
169 L1MA4A 8 n.s 87.0 Weakly correlated
170 L1MCa 8 n.s 99.0 Weakly correlated
171 L1ME3F 8 n.s 99.0 Weakly correlated
172 L1PB3 8 n.s 74.0 Weakly correlated
173 L1PB4 8 n.s 99.0 Weakly correlated
174 LTR33A_ 8 * 99.0 Weakly correlated
175 LTR49 8 * 74.0 Weakly correlated
176 LTR50 8 n.s 99.0 Weakly correlated
177 LTR8B 8 n.s 43.0 Weakly correlated
178 MER21A 8 n.s 74.0 Weakly correlated
179 MER83B 8 **** 43.0 Weakly correlated
180 Plat_L3 8 * 99.0 Weakly correlated
181 AmnSINE1 7 ** 319.0 Weakly correlated
182 HUERS-P3-int 7 n.s 43.0 Weakly correlated
183 L1M3 7 n.s 99.0 Weakly correlated
184 L1MA7 7 n.s 87.0 Weakly correlated
185 L1MA8 7 n.s 87.0 Weakly correlated
186 L1MB5 7 n.s 99.0 Weakly correlated
187 L1MC 7 n.s 99.0 Weakly correlated
188 L1ME3D 7 n.s 99.0 Weakly correlated
189 L1ME4c 7 n.s 99.0 Weakly correlated
190 L1PA2 7 n.s 15.2 Weakly correlated
191 L1PA5 7 n.s 19.6 Weakly correlated
192 L4_A_Mam 7 n.s 99.0 Weakly correlated
193 L4_C_Mam 7 n.s 99.0 Weakly correlated
194 LTR18A 7 **** 43.0 Weakly correlated
195 LTR33C 7 ** 99.0 Weakly correlated
196 LTR41 7 * 99.0 Weakly correlated
197 LTR85a 7 * 99.0 Weakly correlated
198 LTR9B 7 ** 43.0 Weakly correlated
199 MER41-int 7 n.s 74.0 Weakly correlated
200 MER51A 7 * 43.0 Weakly correlated
201 MER66B 7 n.s 43.0 Weakly correlated
202 MER76 7 ** 99.0 Weakly correlated
203 MER89 7 * 99.0 Weakly correlated
204 MLT1E2 7 n.s 99.0 Weakly correlated
205 THE1A-int 7 n.s 43.0 Weakly correlated
206 AluYa5 6 n.s 15.2 Weakly correlated
207 HERV16-int 6 n.s 99.0 Weakly correlated
208 HERVK13-int 6 **** 19.6 Weakly correlated
209 HERVL40-int 6 n.s 99.0 Weakly correlated
210 Harlequin-int 6 n.s 74.0 Weakly correlated
211 L1M6 6 n.s 99.0 Weakly correlated
212 L1MB1 6 n.s 99.0 Weakly correlated
213 L1MD 6 n.s 99.0 Weakly correlated
214 L1MD1 6 n.s 99.0 Weakly correlated
215 L1MDa 6 n.s 99.0 Weakly correlated
216 L1P1 6 n.s 19.6 Weakly correlated
217 L1P3 6 n.s 74.0 Weakly correlated
218 L1PA14 6 n.s 74.0 Weakly correlated
219 L1PA15 6 n.s 74.0 Weakly correlated
220 L1PB2 6 n.s 74.0 Weakly correlated
221 LFSINE_Vert 6 * 319.0 Weakly correlated
222 LTR13_ 6 **** 28.9 Weakly correlated
223 LTR41B 6 * 99.0 Weakly correlated
224 LTR8 6 n.s 43.0 Weakly correlated
225 MER21B 6 n.s 99.0 Weakly correlated
226 MER4C 6 ** 74.0 Weakly correlated
227 MER74B 6 * 99.0 Weakly correlated
228 MER77 6 n.s 99.0 Weakly correlated
229 MLT1E1 6 * 99.0 Weakly correlated
230 MLT1H1 6 n.s 99.0 Weakly correlated
231 PABL_A-int 6 * 74.0 Weakly correlated
232 ERV3-16A3_LTR 5 * 99.0 Weakly correlated
233 ERVL-B4-int 5 n.s 99.0 Weakly correlated
234 HERV3-int 5 n.s 28.9 Weakly correlated
235 HERVIP10B3-int 5 n.s 28.9 Weakly correlated
236 L1M4a2 5 n.s 99.0 Weakly correlated
237 L1MA10 5 n.s 99.0 Weakly correlated
238 L1MA6 5 n.s 87.0 Weakly correlated
239 L1MDb 5 n.s 99.0 Weakly correlated
240 L1PA11 5 n.s 74.0 Weakly correlated
241 L1PA6 5 n.s 28.9 Weakly correlated
242 L2-3_Crp 5 n.s 431.0 Weakly correlated
243 LTR10B1 5 **** 28.9 Weakly correlated
244 LTR16D 5 * 99.0 Weakly correlated
245 LTR28C 5 * 43.0 Weakly correlated
246 LTR49-int 5 n.s 74.0 Weakly correlated
247 LTR55 5 ** 99.0 Weakly correlated
248 LTR65 5 ** 99.0 Weakly correlated
249 MER21-int 5 n.s 99.0 Weakly correlated
250 MER31B 5 n.s 99.0 Weakly correlated
251 MER41A 5 n.s 74.0 Weakly correlated
252 MER4A1 5 n.s 74.0 Weakly correlated
253 MER4B 5 n.s 74.0 Weakly correlated
254 MER51B 5 * 43.0 Weakly correlated
255 MER52A 5 n.s 74.0 Weakly correlated
256 MER52D 5 n.s 74.0 Weakly correlated
257 MER67A 5 ** 99.0 Weakly correlated
258 MER92B 5 * 99.0 Weakly correlated
259 MSTA-int 5 n.s 43.0 Weakly correlated
260 MSTC 5 n.s 74.0 Weakly correlated
261 SVA_E 5 n.s 0.0 Highly correlated
262 THE1C-int 5 n.s 43.0 Weakly correlated
263 THE1D-int 5 n.s 28.9 Weakly correlated
264 AluYk2 4 n.s 19.6 Weakly correlated
265 AluYk4 4 n.s 15.2 Weakly correlated
266 HAL1b 4 n.s 99.0 Weakly correlated
267 HERVFH21-int 4 * 28.9 Weakly correlated
268 L1M7 4 n.s 99.0 Weakly correlated
269 L1MA5 4 n.s 87.0 Weakly correlated
270 L1MD3 4 n.s 99.0 Weakly correlated
271 L1ME3E 4 n.s 99.0 Weakly correlated
272 L1MEb 4 n.s 99.0 Weakly correlated
273 L1P4 4 n.s 74.0 Weakly correlated
274 L1PA3 4 n.s 19.6 Weakly correlated
275 L1PA4 4 n.s 19.6 Weakly correlated
276 LTR101_Mam 4 n.s 99.0 Weakly correlated
277 LTR14B 4 * 28.9 Weakly correlated
278 LTR16B2 4 n.s 99.0 Weakly correlated
279 LTR16D1 4 *** 99.0 Weakly correlated
280 LTR2 4 n.s 28.9 Weakly correlated
281 LTR27B 4 *** 43.0 Weakly correlated
282 LTR28B 4 * 43.0 Weakly correlated
283 LTR38A1 4 **** 74.0 Weakly correlated
284 LTR41C 4 * 99.0 Weakly correlated
285 LTR45C 4 * 99.0 Weakly correlated
286 LTR48B 4 n.s 74.0 Weakly correlated
287 LTR53B 4 *** 99.0 Weakly correlated
288 LTR71B 4 ** 43.0 Weakly correlated
289 LTR85b 4 n.s 99.0 Weakly correlated
290 LTR88b 4 n.s 99.0 Weakly correlated
291 LTR88c 4 * 99.0 Weakly correlated
292 MER101-int 4 n.s 74.0 Weakly correlated
293 MER11A 4 n.s 28.9 Weakly correlated
294 MER41B 4 n.s 74.0 Weakly correlated
295 MER49 4 n.s 43.0 Weakly correlated
296 MER4B-int 4 n.s 99.0 Weakly correlated
297 MER51D 4 **** 43.0 Weakly correlated
298 MER52C 4 n.s 74.0 Weakly correlated
299 MER57-int 4 n.s 87.0 Weakly correlated
300 MER68 4 n.s 99.0 Weakly correlated
301 MER77B 4 n.s 99.0 Weakly correlated
302 MLT1E3 4 n.s 99.0 Weakly correlated
303 MLT2A1 4 n.s 74.0 Weakly correlated
304 MLT2D 4 n.s 99.0 Weakly correlated
305 MSTA1 4 * 74.0 Weakly correlated
306 MSTB2 4 n.s 74.0 Weakly correlated
307 MamGypLTR1b 4 n.s 99.0 Weakly correlated
308 MamGypLTR1c 4 n.s 99.0 Weakly correlated
309 MamGypLTR2c 4 * 99.0 Weakly correlated
310 MamGypLTR3a 4 n.s 99.0 Weakly correlated
311 AluYa8 3 *** 15.2 Weakly correlated
312 AluYc3 3 * 74.0 Weakly correlated
313 AluYh7 3 **** 0.0 Highly correlated
314 AluYk11 3 * 15.2 Weakly correlated
315 CR1-3_Croc 3 n.s 319.0 Weakly correlated
316 HAL1M8 3 n.s 99.0 Weakly correlated
317 HERVK9-int 3 n.s 28.9 Weakly correlated
318 HERVL74-int 3 n.s 99.0 Weakly correlated
319 L1M2a 3 n.s 87.0 Weakly correlated
320 L1M3f 3 n.s 87.0 Weakly correlated
321 L1M4a1 3 n.s 99.0 Weakly correlated
322 L1MA5A 3 n.s 87.0 Weakly correlated
323 L1ME3C 3 n.s 99.0 Weakly correlated
324 L1MEj 3 n.s 99.0 Weakly correlated
325 L1PA10 3 n.s 74.0 Weakly correlated
326 L1PA8 3 n.s 74.0 Weakly correlated
327 L1PBa1 3 n.s 74.0 Weakly correlated
328 LOR1b 3 n.s 74.0 Weakly correlated
329 LTR103_Mam 3 * 99.0 Weakly correlated
330 LTR103b_Mam 3 * 99.0 Weakly correlated
331 LTR104_Mam 3 n.s 99.0 Weakly correlated
332 LTR105_Mam 3 n.s 99.0 Weakly correlated
333 LTR1A2 3 n.s 43.0 Weakly correlated
334 LTR28 3 * 43.0 Weakly correlated
335 LTR34 3 * 74.0 Weakly correlated
336 LTR36 3 n.s 74.0 Weakly correlated
337 LTR37B 3 n.s 99.0 Weakly correlated
338 LTR56 3 n.s 74.0 Weakly correlated
339 LTR5B 3 n.s 28.9 Weakly correlated
340 LTR72 3 ** 74.0 Weakly correlated
341 MER110A 3 n.s 99.0 Weakly correlated
342 MER34A 3 n.s 99.0 Weakly correlated
343 MER39B 3 n.s 74.0 Weakly correlated
344 MER50-int 3 n.s 43.0 Weakly correlated
345 MER51C 3 ** 43.0 Weakly correlated
346 MER66-int 3 n.s 43.0 Weakly correlated
347 MER83C 3 *** 43.0 Weakly correlated
348 MLT1H-int 3 n.s 99.0 Weakly correlated
349 MLT2B4 3 n.s 99.0 Weakly correlated
350 MLT2C1 3 n.s 99.0 Weakly correlated
351 MamGypLTR1a 3 n.s 99.0 Weakly correlated
352 MamGypsy2-I 3 n.s 99.0 Weakly correlated
353 MamRep605 3 n.s 99.0 Weakly correlated
354 PABL_A 3 n.s 43.0 Weakly correlated
355 AluYh3a3 2 * 15.2 Weakly correlated
356 AluYi6 2 n.s 15.2 Weakly correlated
357 CR1-16_AMi 2 * 319.0 Weakly correlated
358 ERV24B_Prim-int 2 n.s 74.0 Weakly correlated
359 ERVL-int 2 n.s 99.0 Weakly correlated
360 HERVL18-int 2 n.s 43.0 Weakly correlated
361 HERVS71-int 2 n.s 28.9 Weakly correlated
362 L1M2c 2 n.s 87.0 Weakly correlated
363 L1M3b 2 n.s 99.0 Weakly correlated
364 L1M4c 2 n.s 99.0 Weakly correlated
365 L1M6B 2 n.s 99.0 Weakly correlated
366 L1M8 2 n.s 99.0 Weakly correlated
367 L1MCb 2 n.s 99.0 Weakly correlated
368 L1P4b 2 n.s 74.0 Weakly correlated
369 L1PA12 2 n.s 74.0 Weakly correlated
370 L1PA17 2 n.s 74.0 Weakly correlated
371 L2-1_AMi 2 n.s 319.0 Weakly correlated
372 L5 2 n.s 99.0 Weakly correlated
373 LOR1-int 2 n.s 74.0 Weakly correlated
374 LOR1a 2 n.s 74.0 Weakly correlated
375 LTR102_Mam 2 n.s 99.0 Weakly correlated
376 LTR10B2 2 ** 28.9 Weakly correlated
377 LTR10E 2 n.s 28.9 Weakly correlated
378 LTR10F 2 n.s 28.9 Weakly correlated
379 LTR10G 2 * 28.9 Weakly correlated
380 LTR12D 2 n.s 19.6 Weakly correlated
381 LTR12E 2 n.s 19.6 Weakly correlated
382 LTR16B1 2 n.s 99.0 Weakly correlated
383 LTR16D2 2 n.s 99.0 Weakly correlated
384 LTR18B 2 n.s 43.0 Weakly correlated
385 LTR1C 2 ** 43.0 Weakly correlated
386 LTR27E 2 n.s 43.0 Weakly correlated
387 LTR2B 2 n.s 19.6 Weakly correlated
388 LTR32 2 n.s 43.0 Weakly correlated
389 LTR33B 2 n.s 99.0 Weakly correlated
390 LTR35B 2 * 43.0 Weakly correlated
391 LTR37-int 2 n.s 99.0 Weakly correlated
392 LTR39 2 n.s 43.0 Weakly correlated
393 LTR40a 2 n.s 99.0 Weakly correlated
394 LTR40c 2 n.s 99.0 Weakly correlated
395 LTR43-int 2 n.s 74.0 Weakly correlated
396 LTR47B2 2 * 74.0 Weakly correlated
397 LTR75B 2 * 99.0 Weakly correlated
398 LTR80B 2 n.s 99.0 Weakly correlated
399 LTR81A 2 n.s 99.0 Weakly correlated
400 LTR82B 2 n.s 99.0 Weakly correlated
401 LTR83 2 n.s 99.0 Weakly correlated
402 LTR88a 2 n.s 99.0 Weakly correlated
403 LTR9 2 n.s 43.0 Weakly correlated
404 LTR9D 2 n.s 43.0 Weakly correlated
405 MER11D 2 n.s 19.6 Weakly correlated
406 MER31-int 2 n.s 99.0 Weakly correlated
407 MER31A 2 n.s 87.0 Weakly correlated
408 MER34-int 2 n.s 99.0 Weakly correlated
409 MER34A1 2 n.s 99.0 Weakly correlated
410 MER34C2 2 n.s 74.0 Weakly correlated
411 MER34D 2 * 74.0 Weakly correlated
412 MER4-int 2 n.s 74.0 Weakly correlated
413 MER41C 2 n.s 74.0 Weakly correlated
414 MER41D 2 n.s 74.0 Weakly correlated
415 MER41G 2 * 74.0 Weakly correlated
416 MER4A 2 n.s 74.0 Weakly correlated
417 MER4D 2 n.s 74.0 Weakly correlated
418 MER50B 2 n.s 43.0 Weakly correlated
419 MER54A 2 n.s 87.0 Weakly correlated
420 MER57B2 2 n.s 43.0 Weakly correlated
421 MER57E3 2 * 74.0 Weakly correlated
422 MER61F 2 * 43.0 Weakly correlated
423 MER65C 2 n.s 74.0 Weakly correlated
424 MER66A 2 n.s 43.0 Weakly correlated
425 MER68-int 2 n.s 99.0 Weakly correlated
426 MLT1A-int 2 n.s 99.0 Weakly correlated
427 MLT1J-int 2 n.s 99.0 Weakly correlated
428 MLT2B1 2 n.s 99.0 Weakly correlated
429 MLT2B3 2 n.s 99.0 Weakly correlated
430 MLT2E 2 n.s 99.0 Weakly correlated
431 MSTD-int 2 n.s 74.0 Weakly correlated
432 MamGyp-int 2 n.s 99.0 Weakly correlated
433 MamGypLTR1d 2 n.s 99.0 Weakly correlated
434 MamGypLTR2b 2 n.s 99.0 Weakly correlated
435 MamGypLTR3 2 n.s 99.0 Weakly correlated
436 MamGypsy2-LTR 2 n.s 99.0 Weakly correlated
437 MamRep1151 2 n.s 99.0 Weakly correlated
438 MamSINE1 2 n.s 99.0 Weakly correlated
439 Penelope1_Vert 2 n.s 319.0 Weakly correlated
440 UCON86 2 *** 319.0 Weakly correlated
441 X9_LINE 2 * 319.0 Weakly correlated
442 AluYe6 1 n.s 74.0 Weakly correlated
443 AluYg6 1 n.s 15.2 Weakly correlated
444 AluYi6_4d 1 * 0.0 Highly correlated
445 AluYk12 1 * 15.2 Weakly correlated
446 CR1-13_AMi 1 ** 319.0 Weakly correlated
447 HERV4_I-int 1 n.s 43.0 Weakly correlated
448 HERVE_a-int 1 n.s 28.9 Weakly correlated
449 HERVFH19-int 1 n.s 43.0 Weakly correlated
450 HERVH48-int 1 n.s 28.9 Weakly correlated
451 HERVI-int 1 n.s 28.9 Weakly correlated
452 HERVK-int 1 n.s 28.9 Weakly correlated
453 HERVK22-int 1 n.s 43.0 Weakly correlated
454 HERVKC4-int 1 n.s 28.9 Weakly correlated
455 HERVP71A-int 1 n.s 43.0 Weakly correlated
456 HUERS-P1-int 1 n.s 43.0 Weakly correlated
457 HUERS-P3b-int 1 n.s 43.0 Weakly correlated
458 L1HS 1 n.s 8.6 Moderately correlated
459 L1M3c 1 n.s 99.0 Weakly correlated
460 L1M3d 1 n.s 99.0 Weakly correlated
461 L1MEa 1 n.s 99.0 Weakly correlated
462 L1MEg1 1 n.s 99.0 Weakly correlated
463 L1MEg2 1 n.s 99.0 Weakly correlated
464 L1P2 1 n.s 28.9 Weakly correlated
465 L1P4d 1 n.s 74.0 Weakly correlated
466 L1PA15-16 1 n.s 74.0 Weakly correlated
467 L1PA8A 1 n.s 74.0 Weakly correlated
468 L1PB 1 n.s 74.0 Weakly correlated
469 L1PBb 1 n.s 74.0 Weakly correlated
470 L4_B_Mam 1 n.s 99.0 Weakly correlated
471 LTR10C 1 n.s 28.9 Weakly correlated
472 LTR12B 1 n.s 28.9 Weakly correlated
473 LTR12F 1 n.s 28.9 Weakly correlated
474 LTR12_ 1 n.s 28.9 Weakly correlated
475 LTR14 1 n.s 28.9 Weakly correlated
476 LTR16B 1 n.s 99.0 Weakly correlated
477 LTR19-int 1 n.s 43.0 Weakly correlated
478 LTR1A1 1 n.s 43.0 Weakly correlated
479 LTR1C3 1 * 43.0 Weakly correlated
480 LTR1D 1 n.s 43.0 Weakly correlated
481 LTR1D1 1 n.s 43.0 Weakly correlated
482 LTR1E 1 n.s 43.0 Weakly correlated
483 LTR1F2 1 n.s 43.0 Weakly correlated
484 LTR21A 1 * 28.9 Weakly correlated
485 LTR22B2 1 ** 28.9 Weakly correlated
486 LTR22C2 1 * 28.9 Weakly correlated
487 LTR23 1 n.s 74.0 Weakly correlated
488 LTR23-int 1 n.s 74.0 Weakly correlated
489 LTR25-int 1 n.s 43.0 Weakly correlated
490 LTR26E 1 n.s 74.0 Weakly correlated
491 LTR27C 1 n.s 43.0 Weakly correlated
492 LTR29 1 n.s 43.0 Weakly correlated
493 LTR35 1 * 43.0 Weakly correlated
494 LTR38 1 n.s 74.0 Weakly correlated
495 LTR40b 1 n.s 99.0 Weakly correlated
496 LTR43 1 n.s 74.0 Weakly correlated
497 LTR45B 1 n.s 74.0 Weakly correlated
498 LTR46-int 1 n.s 74.0 Weakly correlated
499 LTR47A 1 n.s 74.0 Weakly correlated
500 LTR52 1 n.s 99.0 Weakly correlated
501 LTR53 1 n.s 99.0 Weakly correlated
502 LTR53-int 1 n.s 99.0 Weakly correlated
503 LTR54 1 n.s 74.0 Weakly correlated
504 LTR54B 1 n.s 74.0 Weakly correlated
505 LTR57 1 n.s 74.0 Weakly correlated
506 LTR57-int 1 n.s 74.0 Weakly correlated
507 LTR58 1 * 99.0 Weakly correlated
508 LTR59 1 n.s 43.0 Weakly correlated
509 LTR5_Hs 1 n.s 0.0 Highly correlated
510 LTR62 1 n.s 74.0 Weakly correlated
511 LTR64 1 n.s 74.0 Weakly correlated
512 LTR6B 1 n.s 19.6 Weakly correlated
513 LTR7 1 n.s 19.6 Weakly correlated
514 LTR76 1 n.s 74.0 Weakly correlated
515 LTR77 1 n.s 94.0 Weakly correlated
516 LTR7C 1 n.s 28.9 Weakly correlated
517 LTR80A 1 n.s 99.0 Weakly correlated
518 LTR82A 1 n.s 99.0 Weakly correlated
519 LTR84a 1 n.s 99.0 Weakly correlated
520 LTR84b 1 n.s 99.0 Weakly correlated
521 LTR85c 1 n.s 99.0 Weakly correlated
522 LTR86A1 1 n.s 99.0 Weakly correlated
523 LTR86A2 1 n.s 99.0 Weakly correlated
524 LTR86B1 1 n.s 99.0 Weakly correlated
525 LTR86B2 1 n.s 99.0 Weakly correlated
526 LTR87 1 n.s 99.0 Weakly correlated
527 LTR89 1 n.s 99.0 Weakly correlated
528 LTR8A 1 n.s 43.0 Weakly correlated
529 LTR90B 1 n.s 99.0 Weakly correlated
530 MER11B 1 n.s 19.6 Weakly correlated
531 MER11C 1 n.s 19.6 Weakly correlated
532 MER34 1 n.s 87.0 Weakly correlated
533 MER34B 1 n.s 87.0 Weakly correlated
534 MER41E 1 n.s 74.0 Weakly correlated
535 MER4D0 1 n.s 74.0 Weakly correlated
536 MER4D1 1 n.s 74.0 Weakly correlated
537 MER4E 1 n.s 74.0 Weakly correlated
538 MER4E1 1 n.s 74.0 Weakly correlated
539 MER51-int 1 n.s 43.0 Weakly correlated
540 MER51E 1 n.s 43.0 Weakly correlated
541 MER52-int 1 n.s 99.0 Weakly correlated
542 MER57A-int 1 n.s 43.0 Weakly correlated
543 MER57B1 1 n.s 43.0 Weakly correlated
544 MER57C2 1 n.s 87.0 Weakly correlated
545 MER57D 1 n.s 87.0 Weakly correlated
546 MER57E1 1 n.s 87.0 Weakly correlated
547 MER61A 1 n.s 43.0 Weakly correlated
548 MER61C 1 n.s 43.0 Weakly correlated
549 MER61D 1 n.s 43.0 Weakly correlated
550 MER66C 1 n.s 43.0 Weakly correlated
551 MER67C 1 n.s 99.0 Weakly correlated
552 MER70C 1 n.s 99.0 Weakly correlated
553 MER73 1 n.s 87.0 Weakly correlated
554 MER83 1 n.s 43.0 Weakly correlated
555 MER83A-int 1 n.s 99.0 Weakly correlated
556 MER83B-int 1 n.s 99.0 Weakly correlated
557 MER87B 1 n.s 74.0 Weakly correlated
558 MER89-int 1 n.s 99.0 Weakly correlated
559 MER90 1 n.s 99.0 Weakly correlated
560 MER90a 1 n.s 99.0 Weakly correlated
561 MLT-int 1 n.s 99.0 Weakly correlated
562 MLT1A0-int 1 n.s 99.0 Weakly correlated
563 MLT1A1-int 1 n.s 87.0 Weakly correlated
564 MLT1D-int 1 n.s 99.0 Weakly correlated
565 MLT1E 1 n.s 99.0 Weakly correlated
566 MLT1E2-int 1 n.s 99.0 Weakly correlated
567 MLT1F-int 1 n.s 99.0 Weakly correlated
568 MLT1F2-int 1 n.s 99.0 Weakly correlated
569 MLT1G-int 1 n.s 99.0 Weakly correlated
570 MLT1G1-int 1 n.s 99.0 Weakly correlated
571 MLT1G3-int 1 n.s 99.0 Weakly correlated
572 MLT1J1-int 1 n.s 99.0 Weakly correlated
573 MLT1K-int 1 n.s 99.0 Weakly correlated
574 MLT2B2 1 n.s 99.0 Weakly correlated
575 MLT2B5 1 n.s 87.0 Weakly correlated
576 MLT2C2 1 n.s 99.0 Weakly correlated
577 MST-int 1 n.s 74.0 Weakly correlated
578 MamRep1527 1 n.s 99.0 Weakly correlated
579 PRIMA4-int 1 n.s 74.0 Weakly correlated
580 PRIMA41-int 1 n.s 74.0 Weakly correlated
581 UCON49 1 ** 0.0 Highly correlated
582 UCON51 1 ** 319.0 Weakly correlated
583 X6A_LINE 1 n.s 99.0 Weakly correlated
584 X7A_LINE 1 n.s 319.0 Weakly correlated
585 X7C_LINE 1 n.s 319.0 Weakly correlated
586 X8_LINE 1 * 319.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 AluY 620 **** 74.0 Weakly correlated
2 AluJb 495 **** 74.0 Weakly correlated
3 AluSx1 452 **** 74.0 Weakly correlated
4 AluSx 426 **** 74.0 Weakly correlated
5 AluSz 404 **** 74.0 Weakly correlated
6 L2a 367 n.s 99.0 Weakly correlated
7 AluJr 324 **** 74.0 Weakly correlated
8 AluJo 289 **** 74.0 Weakly correlated
9 AluSz6 212 **** 74.0 Weakly correlated
10 L2c 196 n.s 99.0 Weakly correlated
11 AluSq2 184 n.s 74.0 Weakly correlated
12 L2b 162 n.s 99.0 Weakly correlated
13 L2 146 n.s 99.0 Weakly correlated
14 HERVH-int 126 **** 28.9 Weakly correlated
15 AluSp 118 n.s 74.0 Weakly correlated
16 AluSg 116 n.s 74.0 Weakly correlated
17 LTR13 116 **** 19.6 Weakly correlated
18 AluSx3 113 *** 74.0 Weakly correlated
19 AluSc 108 n.s 74.0 Weakly correlated
20 AluSc8 102 **** 74.0 Weakly correlated
21 AluJr4 94 **** 74.0 Weakly correlated
22 AluSq 78 *** 74.0 Weakly correlated
23 MLT1C 77 ** 94.0 Weakly correlated
24 MIRb 72 n.s 99.0 Weakly correlated
25 MLT1D 46 n.s 99.0 Weakly correlated
26 FLAM_C 40 * 74.0 Weakly correlated
27 MIRc 38 n.s 99.0 Weakly correlated
28 MIR 37 n.s 99.0 Weakly correlated
29 MIR3 37 n.s 99.0 Weakly correlated
30 HERVL-int 33 n.s 74.0 Weakly correlated
31 AluSg4 31 ** 74.0 Weakly correlated
32 MLT1B 30 n.s 99.0 Weakly correlated
33 AluSc5 30 ** 74.0 Weakly correlated
34 HERVE-int 29 **** 19.6 Weakly correlated
35 MLT1A0 28 n.s 99.0 Weakly correlated
36 AluYc 25 **** 74.0 Weakly correlated
37 AluYj4 24 **** 0.0 Highly correlated
38 LTR16A1 24 **** 99.0 Weakly correlated
39 L1MEc 22 n.s 99.0 Weakly correlated
40 FLAM_A 22 * 74.0 Weakly correlated
41 MSTB1 22 * 74.0 Weakly correlated
42 FRAM 21 *** 74.0 Weakly correlated
43 MSTB 21 n.s 43.0 Weakly correlated
44 AluYh3 20 **** 15.2 Weakly correlated
45 MLT1F 19 * 99.0 Weakly correlated
46 AluYf1 19 **** 19.6 Weakly correlated
47 MLT1K 19 n.s 99.0 Weakly correlated
48 AluYm1 19 n.s 19.6 Weakly correlated
49 L1PB1 18 n.s 74.0 Weakly correlated
50 THE1A 18 n.s 43.0 Weakly correlated
51 AluYe5 17 **** 74.0 Weakly correlated
52 L3 16 n.s 99.0 Weakly correlated
53 MLT1H 16 n.s 99.0 Weakly correlated
54 MSTA 15 n.s 43.0 Weakly correlated
55 LTR33 15 n.s 99.0 Weakly correlated
56 LTR78 14 n.s 99.0 Weakly correlated
57 HAL1 14 n.s 99.0 Weakly correlated
58 AluSx4 13 n.s 74.0 Weakly correlated
59 AluSg7 13 n.s 74.0 Weakly correlated
60 LTR3A 13 **** 28.9 Weakly correlated
61 LTR2C 12 **** 19.6 Weakly correlated
62 MER39 12 n.s 74.0 Weakly correlated
63 LTR16E1 12 ** 99.0 Weakly correlated
64 LTR16 12 n.s 99.0 Weakly correlated
65 MLT1G1 12 n.s 99.0 Weakly correlated
66 MLT1A 12 n.s 99.0 Weakly correlated
67 MER50 11 n.s 43.0 Weakly correlated
68 MSTD 11 n.s 74.0 Weakly correlated
69 FAM 11 * 87.0 Weakly correlated
70 HERVIP10FH-int 10 ** 28.9 Weakly correlated
71 ERVL-E-int 10 n.s 99.0 Weakly correlated
72 L1MC4 10 n.s 99.0 Weakly correlated
73 LTR16E2 10 * 99.0 Weakly correlated
74 ERV3-16A3_I-int 9 n.s 99.0 Weakly correlated
75 LTR13A 9 **** 28.9 Weakly correlated
76 AluSq10 9 * 74.0 Weakly correlated
77 L1MA9 9 n.s 99.0 Weakly correlated
78 L1MEd 9 n.s 99.0 Weakly correlated
79 MLT1J 9 n.s 99.0 Weakly correlated
80 LTR16C 9 n.s 99.0 Weakly correlated
81 L1ME1 9 n.s 99.0 Weakly correlated
82 L1MB7 8 n.s 99.0 Weakly correlated
83 MER21C 8 n.s 99.0 Weakly correlated
84 MLT1G3 8 n.s 99.0 Weakly correlated
85 MIR1_Amn 8 n.s 319.0 Weakly correlated
86 HERVIP10F-int 7 n.s 28.9 Weakly correlated
87 L1M4 7 n.s 99.0 Weakly correlated
88 MLT1O 7 n.s 99.0 Weakly correlated
89 AluYk3 7 * 19.6 Weakly correlated
90 LTR33A_ 7 n.s 99.0 Weakly correlated
91 L1MC5 7 n.s 99.0 Weakly correlated
92 L1MEg 7 n.s 99.0 Weakly correlated
93 MER74A 7 n.s 99.0 Weakly correlated
94 L1PA13 7 n.s 74.0 Weakly correlated
95 LTR8B 7 n.s 43.0 Weakly correlated
96 MER51A 7 * 43.0 Weakly correlated
97 L1PBa 7 n.s 74.0 Weakly correlated
98 MLT1F2 7 n.s 99.0 Weakly correlated
99 SVA_D 7 n.s 15.2 Weakly correlated
100 AluSq4 6 n.s 74.0 Weakly correlated
101 SVA_A 6 n.s 19.6 Weakly correlated
102 L1PA16 6 n.s 74.0 Weakly correlated
103 MER4CL34 6 * 43.0 Weakly correlated
104 MER41-int 6 n.s 74.0 Weakly correlated
105 MLT1F1 6 n.s 99.0 Weakly correlated
106 L1M5 6 n.s 99.0 Weakly correlated
107 LTR10A 6 *** 28.9 Weakly correlated
108 LTR16A2 6 n.s 99.0 Weakly correlated
109 L1MB8 6 n.s 99.0 Weakly correlated
110 L1M1 6 n.s 74.0 Weakly correlated
111 LTR9B 5 * 43.0 Weakly correlated
112 MER83B 5 **** 43.0 Weakly correlated
113 MLT1N2 5 n.s 99.0 Weakly correlated
114 THE1B 5 n.s 43.0 Weakly correlated
115 MLT1J2 5 n.s 99.0 Weakly correlated
116 LTR41 5 n.s 99.0 Weakly correlated
117 L1MEh 5 n.s 99.0 Weakly correlated
118 L1MA4 5 n.s 87.0 Weakly correlated
119 LTR13_ 5 **** 28.9 Weakly correlated
120 MLT1E1A 5 n.s 99.0 Weakly correlated
121 L1ME3A 5 n.s 99.0 Weakly correlated
122 MER51B 5 * 43.0 Weakly correlated
123 L1MC3 5 n.s 99.0 Weakly correlated
124 LTR16A 5 n.s 99.0 Weakly correlated
125 LTR67B 4 n.s 99.0 Weakly correlated
126 LTR78B 4 n.s 99.0 Weakly correlated
127 MLT1G 4 n.s 99.0 Weakly correlated
128 Harlequin-int 4 n.s 74.0 Weakly correlated
129 L1PA7 4 n.s 74.0 Weakly correlated
130 PABL_A-int 4 n.s 74.0 Weakly correlated
131 THE1B-int 4 n.s 43.0 Weakly correlated
132 LTR28B 4 * 43.0 Weakly correlated
133 MER74B 4 n.s 99.0 Weakly correlated
134 MLT1L 4 n.s 99.0 Weakly correlated
135 HAL1ME 4 n.s 99.0 Weakly correlated
136 HERV16-int 4 n.s 99.0 Weakly correlated
137 MLT1E2 4 n.s 99.0 Weakly correlated
138 MLT1H2 4 n.s 99.0 Weakly correlated
139 L1MA4A 4 n.s 87.0 Weakly correlated
140 L1PREC2 4 n.s 43.0 Weakly correlated
141 LTR49 4 n.s 74.0 Weakly correlated
142 MLT2F 4 n.s 99.0 Weakly correlated
143 L1MC4a 4 n.s 99.0 Weakly correlated
144 L1ME4b 4 n.s 99.0 Weakly correlated
145 L3b 3 n.s 99.0 Weakly correlated
146 MER4B 3 n.s 74.0 Weakly correlated
147 MamGypLTR1b 3 n.s 99.0 Weakly correlated
148 L1M3f 3 n.s 87.0 Weakly correlated
149 L1M4b 3 n.s 99.0 Weakly correlated
150 L1ME2z 3 n.s 99.0 Weakly correlated
151 L1MEi 3 n.s 99.0 Weakly correlated
152 MER52C 3 n.s 74.0 Weakly correlated
153 LTR34 3 * 74.0 Weakly correlated
154 MLT1J1 3 n.s 99.0 Weakly correlated
155 THE1D 3 n.s 43.0 Weakly correlated
156 HERV9-int 3 n.s 28.9 Weakly correlated
157 L1MA2 3 n.s 74.0 Weakly correlated
158 L1MB3 3 n.s 99.0 Weakly correlated
159 MamRTE1 3 n.s 99.0 Weakly correlated
160 HUERS-P3-int 3 n.s 43.0 Weakly correlated
161 L1ME3 3 n.s 99.0 Weakly correlated
162 L1MEf 3 n.s 99.0 Weakly correlated
163 L1PA11 3 n.s 74.0 Weakly correlated
164 L1PA4 3 n.s 19.6 Weakly correlated
165 LTR79 3 n.s 99.0 Weakly correlated
166 LTR85a 3 n.s 99.0 Weakly correlated
167 MSTC 3 n.s 74.0 Weakly correlated
168 MamGypLTR1a 3 n.s 99.0 Weakly correlated
169 HERVFH21-int 3 n.s 28.9 Weakly correlated
170 L1ME3Cz 3 n.s 99.0 Weakly correlated
171 LTR28 3 * 43.0 Weakly correlated
172 LTR88c 3 n.s 99.0 Weakly correlated
173 MER66B 3 n.s 43.0 Weakly correlated
174 MSTA-int 3 n.s 43.0 Weakly correlated
175 Alu 3 n.s 74.0 Weakly correlated
176 AluYk2 3 n.s 19.6 Weakly correlated
177 HERV9NC-int 3 n.s 19.6 Weakly correlated
178 L1ME2 3 n.s 99.0 Weakly correlated
179 L1MEj 3 n.s 99.0 Weakly correlated
180 L1PA15 3 n.s 74.0 Weakly correlated
181 L2-3_Crp 3 n.s 431.0 Weakly correlated
182 LTR33A 3 n.s 99.0 Weakly correlated
183 MLT1H-int 3 n.s 99.0 Weakly correlated
184 L1MA7 3 n.s 87.0 Weakly correlated
185 L4_A_Mam 3 n.s 99.0 Weakly correlated
186 MER31B 3 n.s 99.0 Weakly correlated
187 MLT1A1 3 n.s 87.0 Weakly correlated
188 L1MB5 2 n.s 99.0 Weakly correlated
189 L1MDa 2 n.s 99.0 Weakly correlated
190 L1ME4a 2 n.s 99.0 Weakly correlated
191 L1PB2 2 n.s 74.0 Weakly correlated
192 LTR103b_Mam 2 n.s 99.0 Weakly correlated
193 LTR16D 2 n.s 99.0 Weakly correlated
194 MER4B-int 2 n.s 99.0 Weakly correlated
195 MER57-int 2 n.s 87.0 Weakly correlated
196 MER92B 2 n.s 99.0 Weakly correlated
197 L1MCc 2 n.s 99.0 Weakly correlated
198 LTR10B1 2 * 28.9 Weakly correlated
199 LTR10E 2 n.s 28.9 Weakly correlated
200 LTR41C 2 n.s 99.0 Weakly correlated
201 LTR85b 2 n.s 99.0 Weakly correlated
202 MER41A 2 n.s 74.0 Weakly correlated
203 MER41B 2 n.s 74.0 Weakly correlated
204 MER68-int 2 n.s 99.0 Weakly correlated
205 Plat_L3 2 n.s 99.0 Weakly correlated
206 THE1C-int 2 n.s 43.0 Weakly correlated
207 HERVIP10B3-int 2 n.s 28.9 Weakly correlated
208 L1M3 2 n.s 99.0 Weakly correlated
209 L1MA8 2 n.s 87.0 Weakly correlated
210 L1MC2 2 n.s 99.0 Weakly correlated
211 L1PA2 2 n.s 15.2 Weakly correlated
212 LOR1b 2 n.s 74.0 Weakly correlated
213 MER51D 2 ** 43.0 Weakly correlated
214 SVA_B 2 n.s 15.2 Weakly correlated
215 AluYh3a3 2 * 15.2 Weakly correlated
216 AmnSINE1 2 n.s 319.0 Weakly correlated
217 L1MA3 2 n.s 74.0 Weakly correlated
218 L1MCb 2 n.s 99.0 Weakly correlated
219 LTR72 2 * 74.0 Weakly correlated
220 MER52D 2 n.s 74.0 Weakly correlated
221 MLT1M 2 n.s 99.0 Weakly correlated
222 AluYc3 2 n.s 74.0 Weakly correlated
223 HERV9N-int 2 n.s 19.6 Weakly correlated
224 L1ME3G 2 n.s 99.0 Weakly correlated
225 L4_C_Mam 2 n.s 99.0 Weakly correlated
226 LFSINE_Vert 2 n.s 319.0 Weakly correlated
227 LTR1A2 2 n.s 43.0 Weakly correlated
228 LTR5B 2 n.s 28.9 Weakly correlated
229 MER21B 2 n.s 99.0 Weakly correlated
230 MLT1E1 2 n.s 99.0 Weakly correlated
231 L1MC1 2 n.s 99.0 Weakly correlated
232 L1MC5a 2 n.s 99.0 Weakly correlated
233 MER11D 2 n.s 19.6 Weakly correlated
234 MER39B 2 n.s 74.0 Weakly correlated
235 MER61F 2 * 43.0 Weakly correlated
236 MER76 2 n.s 99.0 Weakly correlated
237 MER77 2 n.s 99.0 Weakly correlated
238 MER83C 2 ** 43.0 Weakly correlated
239 L1M6 2 n.s 99.0 Weakly correlated
240 L1PB3 2 n.s 74.0 Weakly correlated
241 LTR16D1 2 * 99.0 Weakly correlated
242 LTR40a 2 n.s 99.0 Weakly correlated
243 LTR49-int 2 n.s 74.0 Weakly correlated
244 LTR55 2 n.s 99.0 Weakly correlated
245 MER52A 2 n.s 74.0 Weakly correlated
246 MER68 2 n.s 99.0 Weakly correlated
247 L1MD2 2 n.s 99.0 Weakly correlated
248 LTR101_Mam 2 n.s 99.0 Weakly correlated
249 LTR103_Mam 2 n.s 99.0 Weakly correlated
250 LTR33C 2 n.s 99.0 Weakly correlated
251 LTR35B 2 * 43.0 Weakly correlated
252 LTR50 2 n.s 99.0 Weakly correlated
253 MER110A 2 n.s 99.0 Weakly correlated
254 MER21A 2 n.s 74.0 Weakly correlated
255 MER54A 2 n.s 87.0 Weakly correlated
256 MSTA1 2 n.s 74.0 Weakly correlated
257 HUERS-P3b-int 1 n.s 43.0 Weakly correlated
258 L1M4a2 1 n.s 99.0 Weakly correlated
259 L1MA10 1 n.s 99.0 Weakly correlated
260 L1PA10 1 n.s 74.0 Weakly correlated
261 LTR102_Mam 1 n.s 99.0 Weakly correlated
262 LTR10G 1 n.s 28.9 Weakly correlated
263 LTR14B 1 n.s 28.9 Weakly correlated
264 LTR1A1 1 n.s 43.0 Weakly correlated
265 LTR1F2 1 n.s 43.0 Weakly correlated
266 LTR48B 1 n.s 74.0 Weakly correlated
267 LTR5_Hs 1 n.s 0.0 Highly correlated
268 LTR64 1 n.s 74.0 Weakly correlated
269 LTR75B 1 n.s 99.0 Weakly correlated
270 MLT1E 1 n.s 99.0 Weakly correlated
271 MLT1E3 1 n.s 99.0 Weakly correlated
272 MamGypsy2-LTR 1 n.s 99.0 Weakly correlated
273 PABL_A 1 n.s 43.0 Weakly correlated
274 X7C_LINE 1 n.s 319.0 Weakly correlated
275 ERVL-B4-int 1 n.s 99.0 Weakly correlated
276 HERVK22-int 1 n.s 43.0 Weakly correlated
277 HERVL74-int 1 n.s 99.0 Weakly correlated
278 L1M2 1 n.s 99.0 Weakly correlated
279 L1M2a 1 n.s 87.0 Weakly correlated
280 L1M4a1 1 n.s 99.0 Weakly correlated
281 L1MB1 1 n.s 99.0 Weakly correlated
282 L1MB2 1 n.s 99.0 Weakly correlated
283 L1ME3E 1 n.s 99.0 Weakly correlated
284 L1MEa 1 n.s 99.0 Weakly correlated
285 L1PA14 1 n.s 74.0 Weakly correlated
286 L1PA8A 1 n.s 74.0 Weakly correlated
287 L1PBa1 1 n.s 74.0 Weakly correlated
288 LTR16D2 1 n.s 99.0 Weakly correlated
289 LTR27E 1 n.s 43.0 Weakly correlated
290 LTR28C 1 n.s 43.0 Weakly correlated
291 LTR37B 1 n.s 99.0 Weakly correlated
292 LTR39 1 n.s 43.0 Weakly correlated
293 LTR41B 1 n.s 99.0 Weakly correlated
294 LTR46-int 1 n.s 74.0 Weakly correlated
295 LTR77 1 n.s 94.0 Weakly correlated
296 MER34A1 1 n.s 99.0 Weakly correlated
297 MamGypLTR1c 1 n.s 99.0 Weakly correlated
298 MamGypLTR3 1 n.s 99.0 Weakly correlated
299 THE1C 1 n.s 43.0 Weakly correlated
300 X8_LINE 1 * 319.0 Weakly correlated
301 HERV3-int 1 n.s 28.9 Weakly correlated
302 HERV4_I-int 1 n.s 43.0 Weakly correlated
303 HERVK13-int 1 n.s 19.6 Weakly correlated
304 HERVP71A-int 1 n.s 43.0 Weakly correlated
305 L1MEb 1 n.s 99.0 Weakly correlated
306 L1PA12 1 n.s 74.0 Weakly correlated
307 L1PA6 1 n.s 28.9 Weakly correlated
308 L1PB4 1 n.s 99.0 Weakly correlated
309 LTR10C 1 n.s 28.9 Weakly correlated
310 LTR16B1 1 n.s 99.0 Weakly correlated
311 LTR1C 1 * 43.0 Weakly correlated
312 LTR1C3 1 * 43.0 Weakly correlated
313 LTR25-int 1 n.s 43.0 Weakly correlated
314 LTR40c 1 n.s 99.0 Weakly correlated
315 LTR88b 1 n.s 99.0 Weakly correlated
316 MER21-int 1 n.s 99.0 Weakly correlated
317 MER51E 1 n.s 43.0 Weakly correlated
318 MER66C 1 n.s 43.0 Weakly correlated
319 MLT1I 1 n.s 99.0 Weakly correlated
320 MLT1J1-int 1 n.s 99.0 Weakly correlated
321 MLT2B4 1 n.s 99.0 Weakly correlated
322 THE1D-int 1 n.s 28.9 Weakly correlated
323 ERV3-16A3_LTR 1 n.s 99.0 Weakly correlated
324 L1ME3B 1 n.s 99.0 Weakly correlated
325 L1P2 1 n.s 28.9 Weakly correlated
326 L1P4 1 n.s 74.0 Weakly correlated
327 L1PA15-16 1 n.s 74.0 Weakly correlated
328 L1PA5 1 n.s 19.6 Weakly correlated
329 L2-1_AMi 1 n.s 319.0 Weakly correlated
330 LTR18B 1 n.s 43.0 Weakly correlated
331 LTR22B2 1 ** 28.9 Weakly correlated
332 LTR37-int 1 n.s 99.0 Weakly correlated
333 LTR45C 1 n.s 99.0 Weakly correlated
334 LTR71B 1 n.s 43.0 Weakly correlated
335 LTR8A 1 n.s 43.0 Weakly correlated
336 MER34-int 1 n.s 99.0 Weakly correlated
337 MER77B 1 n.s 99.0 Weakly correlated
338 MER89 1 n.s 99.0 Weakly correlated
339 MER90 1 n.s 99.0 Weakly correlated
340 MLT2D 1 n.s 99.0 Weakly correlated
341 MLT2E 1 n.s 99.0 Weakly correlated
342 MamRep605 1 n.s 99.0 Weakly correlated
343 AluYe6 1 n.s 74.0 Weakly correlated
344 AluYi6_4d 1 * 0.0 Highly correlated
345 AluYk11 1 n.s 15.2 Weakly correlated
346 AluYk4 1 n.s 15.2 Weakly correlated
347 HAL1M8 1 n.s 99.0 Weakly correlated
348 HERVKC4-int 1 n.s 28.9 Weakly correlated
349 L1MCa 1 n.s 99.0 Weakly correlated
350 L1MD1 1 n.s 99.0 Weakly correlated
351 L1ME4c 1 n.s 99.0 Weakly correlated
352 L4_B_Mam 1 n.s 99.0 Weakly correlated
353 LTR10B2 1 * 28.9 Weakly correlated
354 LTR26E 1 n.s 74.0 Weakly correlated
355 LTR36 1 n.s 74.0 Weakly correlated
356 LTR40b 1 n.s 99.0 Weakly correlated
357 LTR7C 1 n.s 28.9 Weakly correlated
358 MER34 1 n.s 87.0 Weakly correlated
359 MER49 1 n.s 43.0 Weakly correlated
360 MER4A 1 n.s 74.0 Weakly correlated
361 MER4D 1 n.s 74.0 Weakly correlated
362 MER87B 1 n.s 74.0 Weakly correlated
363 MLT1A1-int 1 n.s 87.0 Weakly correlated
364 MLT1D-int 1 n.s 99.0 Weakly correlated
365 MLT1G1-int 1 n.s 99.0 Weakly correlated
366 MLT1G3-int 1 n.s 99.0 Weakly correlated
367 MLT1K-int 1 n.s 99.0 Weakly correlated
368 MamGypLTR3a 1 n.s 99.0 Weakly correlated
369 MamRep1527 1 n.s 99.0 Weakly correlated
370 MamSINE1 1 n.s 99.0 Weakly correlated
371 SVA_C 1 n.s 15.2 Weakly correlated
372 AluYi6 1 n.s 15.2 Weakly correlated
373 HAL1b 1 n.s 99.0 Weakly correlated
374 HERVE_a-int 1 n.s 28.9 Weakly correlated
375 HERVI-int 1 n.s 28.9 Weakly correlated
376 L1MA1 1 n.s 74.0 Weakly correlated
377 L1MEg1 1 n.s 99.0 Weakly correlated
378 L1P3 1 n.s 74.0 Weakly correlated
379 L1PA8 1 n.s 74.0 Weakly correlated
380 LTR32 1 n.s 43.0 Weakly correlated
381 LTR45B 1 n.s 74.0 Weakly correlated
382 LTR52 1 n.s 99.0 Weakly correlated
383 LTR58 1 * 99.0 Weakly correlated
384 LTR85c 1 n.s 99.0 Weakly correlated
385 LTR88a 1 n.s 99.0 Weakly correlated
386 LTR9D 1 n.s 43.0 Weakly correlated
387 MER51C 1 n.s 43.0 Weakly correlated
388 MER83A-int 1 n.s 99.0 Weakly correlated
389 MLT1F2-int 1 n.s 99.0 Weakly correlated
390 MLT1H1 1 n.s 99.0 Weakly correlated
391 MLT2C2 1 n.s 99.0 Weakly correlated
392 ERVL-int 1 n.s 99.0 Weakly correlated
393 L1MA6 1 n.s 87.0 Weakly correlated
394 L1MB4 1 n.s 99.0 Weakly correlated
395 L1P4d 1 n.s 74.0 Weakly correlated
396 L1PA17 1 n.s 74.0 Weakly correlated
397 LTR12C 1 n.s 19.6 Weakly correlated
398 LTR23 1 n.s 74.0 Weakly correlated
399 LTR65 1 n.s 99.0 Weakly correlated
400 MER57C2 1 n.s 87.0 Weakly correlated
401 MER65C 1 n.s 74.0 Weakly correlated
402 MLT1G-int 1 n.s 99.0 Weakly correlated
403 MLT1J-int 1 n.s 99.0 Weakly correlated
404 MLT2B5 1 n.s 87.0 Weakly correlated
405 SVA_E 1 n.s 0.0 Highly correlated
406 THE1A-int 1 n.s 43.0 Weakly correlated
407 AluYa5 1 n.s 15.2 Weakly correlated
408 CR1-13_AMi 1 ** 319.0 Weakly correlated
409 L1M2c 1 n.s 87.0 Weakly correlated
410 L1M3b 1 n.s 99.0 Weakly correlated
411 L1M3d 1 n.s 99.0 Weakly correlated
412 L1ME3F 1 n.s 99.0 Weakly correlated
413 L1P1 1 n.s 19.6 Weakly correlated
414 LTR14 1 n.s 28.9 Weakly correlated
415 LTR16B2 1 n.s 99.0 Weakly correlated
416 LTR19-int 1 n.s 43.0 Weakly correlated
417 LTR56 1 n.s 74.0 Weakly correlated
418 LTR83 1 n.s 99.0 Weakly correlated
419 LTR86A1 1 n.s 99.0 Weakly correlated
420 MER50B 1 n.s 43.0 Weakly correlated
421 MER57E1 1 n.s 87.0 Weakly correlated
422 MER57E3 1 n.s 74.0 Weakly correlated
423 MER89-int 1 n.s 99.0 Weakly correlated
424 MLT2A2 1 n.s 74.0 Weakly correlated
425 MamGypLTR2c 1 n.s 99.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 ALUSP 74.0 Weakly correlated
2 ALUSQ2 74.0 Weakly correlated
3 ERV3-16A3_I-INT 99.0 Weakly correlated
4 ERVL-E-INT 99.0 Weakly correlated
5 FRAM 74.0 Weakly correlated
6 HAL1 99.0 Weakly correlated
7 HERVE-INT 19.6 Weakly correlated
8 HERVH-INT 28.9 Weakly correlated
9 HERVIP10F-INT 28.9 Weakly correlated
10 HERVIP10FH-INT 28.9 Weakly correlated
11 HERVL-INT 74.0 Weakly correlated
12 L1M1 74.0 Weakly correlated
13 L1M4 99.0 Weakly correlated
14 L1M5 99.0 Weakly correlated
15 L1MC4 99.0 Weakly correlated
16 L1MC5 99.0 Weakly correlated
17 L1MEC 99.0 Weakly correlated
18 L1MED 99.0 Weakly correlated
19 L1MEG 99.0 Weakly correlated
20 L1PA13 74.0 Weakly correlated
21 L1PB1 74.0 Weakly correlated
22 L1PBA 74.0 Weakly correlated
23 L2 99.0 Weakly correlated
24 L2A 99.0 Weakly correlated
25 L2B 99.0 Weakly correlated
26 L2C 99.0 Weakly correlated
27 L3 99.0 Weakly correlated
28 LTR10A 28.9 Weakly correlated
29 LTR13 19.6 Weakly correlated
30 LTR13A 28.9 Weakly correlated
31 LTR16 99.0 Weakly correlated
32 LTR16A1 99.0 Weakly correlated
33 LTR16A2 99.0 Weakly correlated
34 LTR16C 99.0 Weakly correlated
35 LTR16E1 99.0 Weakly correlated
36 LTR16E2 99.0 Weakly correlated
37 LTR2C 19.6 Weakly correlated
38 LTR33 99.0 Weakly correlated
39 LTR33A_ 99.0 Weakly correlated
40 LTR3A 28.9 Weakly correlated
41 LTR78 99.0 Weakly correlated
42 LTR8B 43.0 Weakly correlated
43 MER21C 99.0 Weakly correlated
44 MER39 74.0 Weakly correlated
45 MER41-INT 74.0 Weakly correlated
46 MER4CL34 43.0 Weakly correlated
47 MER50 43.0 Weakly correlated
48 MER51A 43.0 Weakly correlated
49 MER74A 99.0 Weakly correlated
50 MIR 99.0 Weakly correlated
51 MIR1_AMN 319.0 Weakly correlated
52 MIR3 99.0 Weakly correlated
53 MIRC 99.0 Weakly correlated
54 MLT1A0 99.0 Weakly correlated
55 MLT1B 99.0 Weakly correlated
56 MLT1C 94.0 Weakly correlated
57 MLT1D 99.0 Weakly correlated
58 MLT1F 99.0 Weakly correlated
59 MLT1F1 99.0 Weakly correlated
60 MLT1F2 99.0 Weakly correlated
61 MLT1G1 99.0 Weakly correlated
62 MLT1G3 99.0 Weakly correlated
63 MLT1H 99.0 Weakly correlated
64 MLT1J 99.0 Weakly correlated
65 MLT1K 99.0 Weakly correlated
66 MLT1O 99.0 Weakly correlated
67 MSTA 43.0 Weakly correlated
68 MSTB 43.0 Weakly correlated
69 MSTB1 74.0 Weakly correlated
70 MSTD 74.0 Weakly correlated
71 SVA_A 19.6 Weakly correlated
72 SVA_D 15.2 Weakly correlated
73 THE1A 43.0 Weakly correlated