ZRdb KZFP & Repeats
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Human_ZNF248

  • Protein
    Zinc finger protein 248
  • Length
    579
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    99.0 Mya
  • Time of Changing in binding specificity
    99.0 Mya
  • Uniprot_ID
    Q8NDW4
  • NCBI_ID
    57209
Sequence:
MNKSQEQVSFKDVCVDFTQEEWYLLDPAQKILYRDVILENYSNLVSVGYCITKPEVIFKIEQGEEPWILEKGFPSQCHPERKWKVDDVLESSQENEDDHFWELLFHNNKTVSVENGDRGSKTFNLGTDPVSLRNYPYKICDSCEMNLKNISGLIISKKNCSRKKPDEFNVCEKLLLDIRHEKIPIGEKSYKYDQKRNAINYHQDLSQPSFGQSFEYSKNGQGFHDEAAFFTNKRSQIGETVCKYNECGRTFIESLKLNISQRPHLEMEPYGCSICGKSFCMNLRFGHQRALTKDNPYEYNEYGEIFCDNSAFIIHQGAYTRKILREYKVSDKTWEKSALLKHQIVHMGGKSYDYNENGSNFSKKSHLTQLRRAHTGEKTFECGECGKTFWEKSNLTQHQRTHTGEKPYECTECGKAFCQKPHLTNHQRTHTGEKPYECKQCGKTFCVKSNLTEHQRTHTGEKPYECNACGKSFCHRSALTVHQRTHTGEKPFICNECGKSFCVKSNLIVHQRTHTGEKPYKCNECGKTFCEKSALTKHQRTHTGEKPYECNACGKTFSQRSVLTKHQRIHTRVKALSTS
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 8..79
2 dec2h2 240..264
3 C2h2 380..402
4 C2h2 408..430
5 C2h2 436..458
6 C2h2 464..486
7 C2h2 492..514
8 C2h2 520..543
9 C2h2 548..570
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function DNA-binding transcription repressor activity, RNA polymerase II-specific
4 Molecular Function metal ion binding
5 Molecular Function RNA polymerase II transcription regulatory region sequence-specific DNA binding
6 Biological Process negative regulation of transcription by RNA polymerase II
7 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1PA7 664 **** 74.0 Weakly correlated
2 L1PB1 590 **** 74.0 Weakly correlated
3 L1PA5 524 **** 19.6 Weakly correlated
4 L1PA6 386 **** 28.9 Weakly correlated
5 L1M5 239 **** 99.0 Highly correlated
6 L1MA3 230 **** 74.0 Weakly correlated
7 L1M4 183 **** 99.0 Highly correlated
8 L1MA2 179 **** 74.0 Weakly correlated
9 L1MC1 174 **** 99.0 Highly correlated
10 L1ME1 173 **** 99.0 Highly correlated
11 L1MB7 164 **** 99.0 Highly correlated
12 L1PA8 154 **** 74.0 Weakly correlated
13 L1PREC2 144 **** 43.0 Weakly correlated
14 L1PA15 126 **** 74.0 Weakly correlated
15 L1M2 112 **** 99.0 Highly correlated
16 L1MB8 111 **** 99.0 Highly correlated
17 L1PA10 110 **** 74.0 Weakly correlated
18 L1PA13 97 **** 74.0 Weakly correlated
19 L1M1 96 **** 74.0 Weakly correlated
20 L1MA4 96 **** 87.0 Weakly correlated
21 L1P3 89 **** 74.0 Weakly correlated
22 L1PB2 86 **** 74.0 Weakly correlated
23 L1MC 85 **** 99.0 Highly correlated
24 L1MB3 83 **** 99.0 Highly correlated
25 L1MA4A 82 **** 87.0 Weakly correlated
26 L1PB 81 **** 74.0 Weakly correlated
27 L1PA11 80 **** 74.0 Weakly correlated
28 L1MD 78 **** 99.0 Highly correlated
29 L1ME2 77 **** 99.0 Highly correlated
30 L1M3 76 **** 99.0 Highly correlated
31 L1PA14 75 **** 74.0 Weakly correlated
32 L1MD2 74 **** 99.0 Highly correlated
33 L1PA4 74 ** 19.6 Weakly correlated
34 L1MD1 71 **** 99.0 Highly correlated
35 L1PB3 67 **** 74.0 Weakly correlated
36 L1MA9 66 **** 99.0 Highly correlated
37 L1PA16 58 **** 74.0 Weakly correlated
38 L1MA8 57 **** 87.0 Weakly correlated
39 L1PA8A 54 **** 74.0 Weakly correlated
40 L1MC2 52 **** 99.0 Highly correlated
41 L1MEc 52 **** 99.0 Highly correlated
42 L1MB2 51 **** 99.0 Highly correlated
43 L1MA1 50 **** 74.0 Weakly correlated
44 L1MB5 50 **** 99.0 Highly correlated
45 L1MA7 49 **** 87.0 Weakly correlated
46 L1ME3A 48 **** 99.0 Highly correlated
47 L1MA6 45 **** 87.0 Weakly correlated
48 AluJb 43 n.s 74.0 Weakly correlated
49 AluY 43 n.s 74.0 Weakly correlated
50 L1MB4 40 **** 99.0 Highly correlated
51 L1P1 40 **** 19.6 Weakly correlated
52 L1PA3 40 n.s 19.6 Weakly correlated
53 AluSx1 38 n.s 74.0 Weakly correlated
54 L2c 37 n.s 99.0 Highly correlated
55 L1MB1 36 **** 99.0 Highly correlated
56 L1MA5 35 **** 87.0 Weakly correlated
57 L1MEf 35 **** 99.0 Highly correlated
58 AluSz 34 n.s 74.0 Weakly correlated
59 L1MC3 33 ** 99.0 Highly correlated
60 L1MEg 33 *** 99.0 Highly correlated
61 L1P2 33 **** 28.9 Weakly correlated
62 L1ME3B 32 **** 99.0 Highly correlated
63 L1PBa 32 **** 74.0 Weakly correlated
64 L1MCa 31 **** 99.0 Highly correlated
65 L1MDa 31 **** 99.0 Highly correlated
66 AluSq2 30 n.s 74.0 Weakly correlated
67 AluSx 30 n.s 74.0 Weakly correlated
68 L1MA5A 29 **** 87.0 Weakly correlated
69 L1ME2z 28 **** 99.0 Highly correlated
70 L1ME3Cz 28 **** 99.0 Highly correlated
71 L1P4 27 **** 74.0 Weakly correlated
72 L1PA17 27 **** 74.0 Weakly correlated
73 L1PB4 27 **** 99.0 Highly correlated
74 L2a 27 n.s 99.0 Highly correlated
75 AluJr 25 n.s 74.0 Weakly correlated
76 AluSp 24 n.s 74.0 Weakly correlated
77 MIR 24 n.s 99.0 Highly correlated
78 AluJo 23 n.s 74.0 Weakly correlated
79 L1ME3 22 *** 99.0 Highly correlated
80 L1ME4a 22 n.s 99.0 Highly correlated
81 AluSx3 19 n.s 74.0 Weakly correlated
82 AluSc 18 n.s 74.0 Weakly correlated
83 L1ME3F 18 **** 99.0 Highly correlated
84 L1M4c 17 **** 99.0 Highly correlated
85 L1MEd 17 n.s 99.0 Highly correlated
86 L1PA12 17 **** 74.0 Weakly correlated
87 L1MC4 16 n.s 99.0 Highly correlated
88 L1ME4b 16 n.s 99.0 Highly correlated
89 L1PBa1 16 **** 74.0 Weakly correlated
90 L1ME3E 15 **** 99.0 Highly correlated
91 MIRc 15 n.s 99.0 Highly correlated
92 AluSg 14 n.s 74.0 Weakly correlated
93 L1MD3 14 *** 99.0 Highly correlated
94 AluSz6 13 n.s 74.0 Weakly correlated
95 L1MC5a 13 n.s 99.0 Highly correlated
96 MIRb 13 n.s 99.0 Highly correlated
97 L1MA10 11 ** 99.0 Highly correlated
98 L1ME3C 10 *** 99.0 Highly correlated
99 L1PA2 9 n.s 15.2 Weakly correlated
100 MLT1A0 9 n.s 99.0 Highly correlated
101 L1ME3D 8 * 99.0 Highly correlated
102 L1PA15-16 8 * 74.0 Weakly correlated
103 L2 8 n.s 99.0 Highly correlated
104 L2b 8 n.s 99.0 Highly correlated
105 AluJr4 7 n.s 74.0 Weakly correlated
106 AluSg7 7 n.s 74.0 Weakly correlated
107 AluSq 7 n.s 74.0 Weakly correlated
108 AluYc 7 * 74.0 Weakly correlated
109 L1MCb 7 * 99.0 Highly correlated
110 MLT1C 7 n.s 94.0 Weakly correlated
111 FLAM_C 6 n.s 74.0 Weakly correlated
112 HAL1 6 n.s 99.0 Highly correlated
113 HAL1b 6 n.s 99.0 Highly correlated
114 L1M4b 6 n.s 99.0 Highly correlated
115 L1MC4a 6 n.s 99.0 Highly correlated
116 L1MC5 6 n.s 99.0 Highly correlated
117 MER61-int 6 * 43.0 Weakly correlated
118 MIR3 6 n.s 99.0 Highly correlated
119 MSTB 6 n.s 43.0 Weakly correlated
120 THE1D 6 n.s 43.0 Weakly correlated
121 AluSg4 5 n.s 74.0 Weakly correlated
122 AluSx4 5 n.s 74.0 Weakly correlated
123 ERV3-16A3_I-int 5 n.s 99.0 Highly correlated
124 L1M2a 5 ** 87.0 Weakly correlated
125 L1M4a1 5 n.s 99.0 Highly correlated
126 L3 5 n.s 99.0 Highly correlated
127 MER11A 5 n.s 28.9 Weakly correlated
128 MER4-int 5 n.s 74.0 Weakly correlated
129 MLT1B 5 n.s 99.0 Highly correlated
130 MLT1D 5 n.s 99.0 Highly correlated
131 MLT1L 5 n.s 99.0 Highly correlated
132 MSTA 5 n.s 43.0 Weakly correlated
133 THE1B 5 n.s 43.0 Weakly correlated
134 AluSc8 4 n.s 74.0 Weakly correlated
135 ERVL-B4-int 4 n.s 99.0 Highly correlated
136 L1M3e 4 * 99.0 Highly correlated
137 L1M3f 4 * 87.0 Weakly correlated
138 L1ME3G 4 n.s 99.0 Highly correlated
139 L1ME4c 4 n.s 99.0 Highly correlated
140 L1MEb 4 * 99.0 Highly correlated
141 LOR1-int 4 n.s 74.0 Weakly correlated
142 MER41-int 4 n.s 74.0 Weakly correlated
143 MER4A1 4 n.s 74.0 Weakly correlated
144 MER4B 4 n.s 74.0 Weakly correlated
145 AluSc5 3 n.s 74.0 Weakly correlated
146 FLAM_A 3 n.s 74.0 Weakly correlated
147 FRAM 3 n.s 74.0 Weakly correlated
148 HAL1ME 3 n.s 99.0 Highly correlated
149 HERVK-int 3 n.s 28.9 Weakly correlated
150 L1M4a2 3 n.s 99.0 Highly correlated
151 L1MCc 3 n.s 99.0 Highly correlated
152 L1MEa 3 *** 99.0 Highly correlated
153 L1P4a 3 n.s 74.0 Weakly correlated
154 LTR10A 3 *** 28.9 Weakly correlated
155 LTR13 3 * 19.6 Weakly correlated
156 MLT1A1 3 n.s 87.0 Weakly correlated
157 AluYe5 2 n.s 74.0 Weakly correlated
158 ERVL-int 2 n.s 99.0 Highly correlated
159 HERV4_I-int 2 * 43.0 Weakly correlated
160 HERVL-int 2 n.s 74.0 Weakly correlated
161 L1M2b 2 ** 87.0 Weakly correlated
162 L1M3c 2 n.s 99.0 Highly correlated
163 L1M6 2 n.s 99.0 Highly correlated
164 L1M7 2 n.s 99.0 Highly correlated
165 L1ME5 2 n.s 99.0 Highly correlated
166 L1MEh 2 n.s 99.0 Highly correlated
167 L1MEi 2 n.s 99.0 Highly correlated
168 L1P4e 2 * 74.0 Weakly correlated
169 L4_A_Mam 2 n.s 99.0 Highly correlated
170 LTR10F 2 * 28.9 Weakly correlated
171 LTR12_ 2 n.s 28.9 Weakly correlated
172 LTR16 2 n.s 99.0 Highly correlated
173 LTR16A 2 n.s 99.0 Highly correlated
174 LTR16C 2 n.s 99.0 Highly correlated
175 LTR25-int 2 n.s 43.0 Weakly correlated
176 LTR26 2 * 74.0 Weakly correlated
177 LTR33 2 n.s 99.0 Highly correlated
178 LTR88c 2 ** 99.0 Highly correlated
179 MER110A 2 * 99.0 Highly correlated
180 MER34A 2 n.s 99.0 Highly correlated
181 MER41B 2 n.s 74.0 Weakly correlated
182 MER52A 2 n.s 74.0 Weakly correlated
183 MER57-int 2 n.s 87.0 Weakly correlated
184 MER76 2 * 99.0 Highly correlated
185 MLT1A 2 n.s 99.0 Highly correlated
186 MLT1G3 2 n.s 99.0 Highly correlated
187 MLT1H 2 n.s 99.0 Highly correlated
188 MLT1J 2 n.s 99.0 Highly correlated
189 MLT2B3 2 n.s 99.0 Highly correlated
190 MLT2B4 2 n.s 99.0 Highly correlated
191 MSTB1 2 n.s 74.0 Weakly correlated
192 MSTB2 2 n.s 74.0 Weakly correlated
193 MSTD 2 n.s 74.0 Weakly correlated
194 MamRTE1 2 n.s 99.0 Highly correlated
195 THE1A 2 n.s 43.0 Weakly correlated
196 THE1C 2 n.s 43.0 Weakly correlated
197 AluSq10 1 n.s 74.0 Weakly correlated
198 AluYa5 1 n.s 15.2 Weakly correlated
199 AluYc3 1 n.s 74.0 Weakly correlated
200 AluYh9 1 *** 15.2 Weakly correlated
201 AluYj4 1 n.s 0.0 Weakly correlated
202 AluYk11 1 * 15.2 Weakly correlated
203 AluYm1 1 n.s 19.6 Weakly correlated
204 CR1-3_Croc 1 n.s 319.0 Weakly correlated
205 ERVL-E-int 1 n.s 99.0 Highly correlated
206 HERVK11-int 1 n.s 28.9 Weakly correlated
207 HERVK3-int 1 n.s 28.9 Weakly correlated
208 HERVL40-int 1 n.s 99.0 Highly correlated
209 HUERS-P3-int 1 n.s 43.0 Weakly correlated
210 L1M 1 * 74.0 Weakly correlated
211 L1M2a1 1 * 79.0 Weakly correlated
212 L1M3a 1 n.s 99.0 Highly correlated
213 L1M3b 1 n.s 99.0 Highly correlated
214 L1M8 1 n.s 99.0 Highly correlated
215 L1MDb 1 n.s 99.0 Highly correlated
216 L1P4b 1 n.s 74.0 Weakly correlated
217 L1P4d 1 n.s 74.0 Weakly correlated
218 L1PBb 1 n.s 74.0 Weakly correlated
219 L3b 1 n.s 99.0 Highly correlated
220 L4_C_Mam 1 n.s 99.0 Highly correlated
221 LFSINE_Vert 1 n.s 319.0 Weakly correlated
222 LOR1a 1 n.s 74.0 Weakly correlated
223 LTR102_Mam 1 n.s 99.0 Highly correlated
224 LTR12C 1 n.s 19.6 Weakly correlated
225 LTR12F 1 n.s 28.9 Weakly correlated
226 LTR16B 1 n.s 99.0 Highly correlated
227 LTR2 1 n.s 28.9 Weakly correlated
228 LTR24B 1 n.s 74.0 Weakly correlated
229 LTR37A 1 n.s 99.0 Highly correlated
230 LTR38-int 1 ** 74.0 Weakly correlated
231 LTR5_Hs 1 n.s 0.0 Weakly correlated
232 LTR75_1 1 ** 99.0 Highly correlated
233 LTR76 1 * 74.0 Weakly correlated
234 LTR8 1 n.s 43.0 Weakly correlated
235 LTR83 1 n.s 99.0 Highly correlated
236 LTR84a 1 n.s 99.0 Highly correlated
237 LTR85b 1 n.s 99.0 Highly correlated
238 LTR8B 1 n.s 43.0 Weakly correlated
239 MER101-int 1 n.s 74.0 Weakly correlated
240 MER11C 1 n.s 19.6 Weakly correlated
241 MER129 1 ** 319.0 Weakly correlated
242 MER21A 1 n.s 74.0 Weakly correlated
243 MER21C 1 n.s 99.0 Highly correlated
244 MER34C2 1 n.s 74.0 Weakly correlated
245 MER39B 1 n.s 74.0 Weakly correlated
246 MER41A 1 n.s 74.0 Weakly correlated
247 MER49 1 n.s 43.0 Weakly correlated
248 MER50 1 n.s 43.0 Weakly correlated
249 MER50-int 1 n.s 43.0 Weakly correlated
250 MER51-int 1 n.s 43.0 Weakly correlated
251 MER57A1 1 n.s 43.0 Weakly correlated
252 MER65A 1 n.s 74.0 Weakly correlated
253 MER68 1 n.s 99.0 Highly correlated
254 MER68B 1 n.s 99.0 Highly correlated
255 MER87B 1 * 74.0 Weakly correlated
256 MER95 1 ** 99.0 Highly correlated
257 MIR1_Amn 1 n.s 319.0 Weakly correlated
258 MLT1A1-int 1 n.s 87.0 Weakly correlated
259 MLT1E1 1 n.s 99.0 Highly correlated
260 MLT1E2 1 n.s 99.0 Highly correlated
261 MLT1F2 1 n.s 99.0 Highly correlated
262 MLT1G1 1 n.s 99.0 Highly correlated
263 MLT1I 1 n.s 99.0 Highly correlated
264 MLT1O 1 n.s 99.0 Highly correlated
265 MLT2A2 1 n.s 74.0 Weakly correlated
266 MLT2C1 1 n.s 99.0 Highly correlated
267 MLT2D 1 n.s 99.0 Highly correlated
268 MSTC 1 n.s 74.0 Weakly correlated
269 MamGypLTR2c 1 n.s 99.0 Highly correlated
270 MamRep605 1 n.s 99.0 Highly correlated
271 MamSINE1 1 n.s 99.0 Highly correlated
272 SVA_F 1 n.s 0.0 Weakly correlated
273 THE1A-int 1 n.s 43.0 Weakly correlated
274 X7D_LINE 1 **** 319.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1PA7 647 **** 74.0 Weakly correlated
2 L1PB1 571 **** 74.0 Weakly correlated
3 L1PA5 483 **** 19.6 Weakly correlated
4 L1PA6 380 **** 28.9 Weakly correlated
5 L1MA3 217 **** 74.0 Weakly correlated
6 L1M5 185 **** 99.0 Highly correlated
7 L1MA2 175 **** 74.0 Weakly correlated
8 L1M4 161 **** 99.0 Highly correlated
9 L1MC1 158 **** 99.0 Highly correlated
10 L1PA8 148 **** 74.0 Weakly correlated
11 L1ME1 144 **** 99.0 Highly correlated
12 L1MB7 137 **** 99.0 Highly correlated
13 L1PREC2 136 **** 43.0 Weakly correlated
14 L1PA15 124 **** 74.0 Weakly correlated
15 L1PA10 109 **** 74.0 Weakly correlated
16 L1M2 100 **** 99.0 Highly correlated
17 L1MB8 94 **** 99.0 Highly correlated
18 L1PA13 90 **** 74.0 Weakly correlated
19 L1M1 89 **** 74.0 Weakly correlated
20 L1MA4 86 **** 87.0 Weakly correlated
21 L1P3 84 **** 74.0 Weakly correlated
22 L1PB2 84 **** 74.0 Weakly correlated
23 L1PA11 81 **** 74.0 Weakly correlated
24 L1PB 78 **** 74.0 Weakly correlated
25 L1MA4A 76 **** 87.0 Weakly correlated
26 L1MB3 72 **** 99.0 Highly correlated
27 L1MC 72 **** 99.0 Highly correlated
28 L1PA14 72 **** 74.0 Weakly correlated
29 L1PA4 69 * 19.6 Weakly correlated
30 L1M3 65 **** 99.0 Highly correlated
31 L1MD2 65 **** 99.0 Highly correlated
32 L1PB3 65 **** 74.0 Weakly correlated
33 L1MD 63 **** 99.0 Highly correlated
34 L1ME2 61 **** 99.0 Highly correlated
35 L1MA9 60 **** 99.0 Highly correlated
36 L1PA16 56 **** 74.0 Weakly correlated
37 L1MD1 54 **** 99.0 Highly correlated
38 L1MA8 50 **** 87.0 Weakly correlated
39 L1MC2 49 **** 99.0 Highly correlated
40 L1PA8A 49 **** 74.0 Weakly correlated
41 L1MA1 48 **** 74.0 Weakly correlated
42 L1MA7 46 **** 87.0 Weakly correlated
43 L1MB2 45 **** 99.0 Highly correlated
44 L1MB5 41 **** 99.0 Highly correlated
45 L1MEc 41 ** 99.0 Highly correlated
46 L1PA3 39 n.s 19.6 Weakly correlated
47 L1MA6 37 **** 87.0 Weakly correlated
48 L1ME3A 35 **** 99.0 Highly correlated
49 L1MB4 33 **** 99.0 Highly correlated
50 L1P1 33 **** 19.6 Weakly correlated
51 L1PBa 32 **** 74.0 Weakly correlated
52 L1MA5 30 **** 87.0 Weakly correlated
53 L1MB1 29 **** 99.0 Highly correlated
54 L1P2 29 **** 28.9 Weakly correlated
55 L1MC3 27 n.s 99.0 Highly correlated
56 L1MA5A 26 **** 87.0 Weakly correlated
57 L1MEf 26 * 99.0 Highly correlated
58 L1PA17 25 **** 74.0 Weakly correlated
59 L1MCa 25 *** 99.0 Highly correlated
60 L1ME3B 25 **** 99.0 Highly correlated
61 L1P4 25 **** 74.0 Weakly correlated
62 L1MDa 24 *** 99.0 Highly correlated
63 L1MEg 23 n.s 99.0 Highly correlated
64 L1PB4 23 ** 99.0 Highly correlated
65 L1ME2z 20 **** 99.0 Highly correlated
66 L1ME3 19 ** 99.0 Highly correlated
67 L1ME3Cz 19 ** 99.0 Highly correlated
68 L1PA12 17 **** 74.0 Weakly correlated
69 L1ME3F 16 **** 99.0 Highly correlated
70 L1PBa1 16 **** 74.0 Weakly correlated
71 L1M4c 15 *** 99.0 Highly correlated
72 L1ME3E 13 *** 99.0 Highly correlated
73 L1MEd 13 n.s 99.0 Highly correlated
74 L1MA10 11 ** 99.0 Highly correlated
75 L1MC4 10 n.s 99.0 Highly correlated
76 L1ME3C 8 ** 99.0 Highly correlated
77 L1MD3 8 n.s 99.0 Highly correlated
78 L1ME3D 7 n.s 99.0 Highly correlated
79 L1MC5a 6 n.s 99.0 Highly correlated
80 L1ME4a 6 n.s 99.0 Highly correlated
81 L2c 6 n.s 99.0 Highly correlated
82 L2a 6 n.s 99.0 Highly correlated
83 L1PA15-16 6 n.s 74.0 Weakly correlated
84 L1M2a 5 ** 87.0 Weakly correlated
85 L1ME4b 5 n.s 99.0 Highly correlated
86 L1M4b 5 n.s 99.0 Highly correlated
87 L1MCb 4 n.s 99.0 Highly correlated
88 MIRc 4 n.s 99.0 Highly correlated
89 L1M3e 3 n.s 99.0 Highly correlated
90 L1MEb 3 n.s 99.0 Highly correlated
91 L2b 3 n.s 99.0 Highly correlated
92 L1M3f 3 n.s 87.0 Weakly correlated
93 L1MC5 3 n.s 99.0 Highly correlated
94 MER11A 3 n.s 28.9 Weakly correlated
95 MER4B 3 n.s 74.0 Weakly correlated
96 L1MC4a 3 n.s 99.0 Highly correlated
97 HAL1b 3 n.s 99.0 Highly correlated
98 L1PA2 3 n.s 15.2 Weakly correlated
99 MER4A1 3 n.s 74.0 Weakly correlated
100 L1P4a 2 n.s 74.0 Weakly correlated
101 L1P4e 2 * 74.0 Weakly correlated
102 MLT1D 2 n.s 99.0 Highly correlated
103 L1M6 2 n.s 99.0 Highly correlated
104 AluSq2 2 n.s 74.0 Weakly correlated
105 L1M4a1 2 n.s 99.0 Highly correlated
106 L1ME3G 2 n.s 99.0 Highly correlated
107 L1ME4c 2 n.s 99.0 Highly correlated
108 MIR 2 n.s 99.0 Highly correlated
109 L1M7 2 n.s 99.0 Highly correlated
110 L1MCc 2 n.s 99.0 Highly correlated
111 MIRb 2 n.s 99.0 Highly correlated
112 AluSx3 2 n.s 74.0 Weakly correlated
113 L1MEa 2 ** 99.0 Highly correlated
114 L1MEh 2 n.s 99.0 Highly correlated
115 ERVL-B4-int 1 n.s 99.0 Highly correlated
116 L1MDb 1 n.s 99.0 Highly correlated
117 L2 1 n.s 99.0 Highly correlated
118 LTR88c 1 n.s 99.0 Highly correlated
119 L1M2b 1 n.s 87.0 Weakly correlated
120 LTR26 1 n.s 74.0 Weakly correlated
121 MER87B 1 * 74.0 Weakly correlated
122 L1MEi 1 n.s 99.0 Highly correlated
123 L1P4d 1 n.s 74.0 Weakly correlated
124 LTR16C 1 n.s 99.0 Highly correlated
125 LTR75_1 1 ** 99.0 Highly correlated
126 L1M3b 1 n.s 99.0 Highly correlated
127 L1M4a2 1 n.s 99.0 Highly correlated
128 LOR1-int 1 n.s 74.0 Weakly correlated
129 LTR76 1 * 74.0 Weakly correlated
130 MLT1G1 1 n.s 99.0 Highly correlated
131 MLT1J 1 n.s 99.0 Highly correlated
132 MLT1O 1 n.s 99.0 Highly correlated
133 LFSINE_Vert 1 n.s 319.0 Weakly correlated
134 LTR16A 1 n.s 99.0 Highly correlated
135 L1M3a 1 n.s 99.0 Highly correlated
136 L1M8 1 n.s 99.0 Highly correlated
137 L1P4b 1 n.s 74.0 Weakly correlated
138 L1PBb 1 n.s 74.0 Weakly correlated
139 L3 1 n.s 99.0 Highly correlated
140 LTR37A 1 n.s 99.0 Highly correlated
141 LTR38-int 1 ** 74.0 Weakly correlated
142 MLT2B4 1 n.s 99.0 Highly correlated
143 MamRTE1 1 n.s 99.0 Highly correlated
144 ERV3-16A3_I-int 1 n.s 99.0 Highly correlated
145 MER34A 1 n.s 99.0 Highly correlated
146 MER49 1 n.s 43.0 Weakly correlated
147 MER68 1 n.s 99.0 Highly correlated
148 MLT1L 1 n.s 99.0 Highly correlated
149 HERVL40-int 1 n.s 99.0 Highly correlated
150 L1M2a1 1 * 79.0 Weakly correlated
151 L1M3c 1 n.s 99.0 Highly correlated
152 L1M3de 1 n.s 99.0 Highly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 L1M1 74.0 Weakly correlated
2 L1M2 99.0 Highly correlated
3 L1M3 99.0 Highly correlated
4 L1M4 99.0 Highly correlated
5 L1M4C 99.0 Highly correlated
6 L1M5 99.0 Highly correlated
7 L1MA1 74.0 Weakly correlated
8 L1MA4 87.0 Weakly correlated
9 L1MA5A 87.0 Weakly correlated
10 L1MC 99.0 Highly correlated
11 L1MC1 99.0 Highly correlated
12 L1MC2 99.0 Highly correlated
13 L1MC3 99.0 Highly correlated
14 L1MC4 99.0 Highly correlated
15 L1MC5A 99.0 Highly correlated
16 L1MCA 99.0 Highly correlated
17 L1MD 99.0 Highly correlated
18 L1MD1 99.0 Highly correlated
19 L1MD2 99.0 Highly correlated
20 L1MD3 99.0 Highly correlated
21 L1MDA 99.0 Highly correlated
22 L1ME1 99.0 Highly correlated
23 L1ME2 99.0 Highly correlated
24 L1ME2Z 99.0 Highly correlated
25 L1ME3C 99.0 Highly correlated
26 L1ME3CZ 99.0 Highly correlated
27 L1ME3D 99.0 Highly correlated
28 L1ME3E 99.0 Highly correlated
29 L1ME3F 99.0 Highly correlated
30 L1ME4A 99.0 Highly correlated
31 L1MEC 99.0 Highly correlated
32 L1MED 99.0 Highly correlated
33 L1MEF 99.0 Highly correlated
34 L1MEG 99.0 Highly correlated
35 L1P4 74.0 Weakly correlated
36 L1PA10 74.0 Weakly correlated
37 L1PA11 74.0 Weakly correlated
38 L1PA12 74.0 Weakly correlated
39 L1PA13 74.0 Weakly correlated
40 L1PA15 74.0 Weakly correlated
41 L1PA15-16 74.0 Weakly correlated
42 L1PA16 74.0 Weakly correlated
43 L1PA4 19.6 Weakly correlated
44 L1PA5 19.6 Weakly correlated
45 L1PA6 28.9 Weakly correlated
46 L1PA7 74.0 Weakly correlated
47 L1PA8 74.0 Weakly correlated
48 L1PA8A 74.0 Weakly correlated
49 L1PB 74.0 Weakly correlated
50 L1PBA 74.0 Weakly correlated
51 L1PREC2 43.0 Weakly correlated