ZRdb KZFP & Repeats
...

Human_ZNF197

  • Protein
    Zinc finger protein 197
  • Length
    1029
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    99.0 Mya
  • Time of Changing in binding specificity
    99.0 Mya
  • Uniprot_ID
    O14709
  • NCBI_ID
    10168
Sequence:
MTRENVAHNALRQEGLVKGKDDTWKWGTSFQGSSSSVWETSHLHFRQLRYHETSGPQEALSRLRELCRRWLRPEARTKAQILELLVLEQFLSILPGEIRTWVQLHHPGSGEEAVALVEELQKDLDGPAIQVPVLVKDQDTLQKVVSAPGTTLPPVLPGSHIAAEICPHPPTDLVAFNLQDPQHDSPAPEASALSQEENPRNQLMALMLLTAQPQELVMFEEVSVCFTSEEWACLGPIQRALYWDVMLENYGNVTSLEWETMTENEEVTSKPSSSQRADSHKGTSKRLQGSVPQVLDFEEECEWQVLASQWGNETDERADTVKKVSLCERDKKKRTPPEKQGQKWKELGDSLTFGSAISESLIGTEGKKFYKCDMCCKHFNKISHLINHRRIHTGEKPHKCKECGKGFIQRSSLLMHLRNHSGEKPYKCNECGKAFSQSAYLLNHQRIHTGEKPYKCKECGKGFYRHSGLIIHLRRHSGERPYKCNECGKVFSQNAYLIDHQRLHKGEEPYKCNKCQKAFILKKSLILHQRIHSGEKPYKCDECGKTFAQTTYLIDHQRLHSAENPYKCKECGKVFIRSKSLLLHQRVHTEKKTFGCKKCGKIFSSKSNFIDHKRMHSREKPYKCTECGKAFTQSAYLFDHQRLHNGEKPYECNECGKVFILKKSLILHQRFHTGENLYECKDCGKVFGSNRNLIDHERLHNGEKPYECRECGKTFIMSKSFMVHQKLHTQEKAYKCEDCGKAFSYNSSLLVHRRIHTGEKPFECSECGRAFSSNRNLIEHKRIHSGEKPYECDECGKCFILKKSLIGHQRIHTREKSYKCNDCGKVFSYRSNLIAHQRIHTGEKPYACSECGKGFTYNRNLIEHQRIHSGEKTYECHVCRKVLTSSRNLMVHQRIHTGEKPYKCNECGKDFSQNKNLVVHQRMHTGEKPYECDKCRKSFTSKRNLVGHQRIHTGEKPYGCNDCSKVFRQRKNLTVHQKIHTDEKPCECDVSEKEFSQTSNLHLQQKIHTIEEFSWLQNTNESKIEIQKI
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 scan 42..124
2 KRAB 217..289
3 C2h2 370..392
4 C2h2 398..420
5 C2h2 426..448
6 C2h2 454..476
7 C2h2 482..504
8 C2h2 510..532
9 C2h2 538..560
10 C2h2 566..588
11 C2h2 594..616
12 C2h2 622..644
13 C2h2 650..672
14 C2h2 678..700
15 C2h2 706..728
16 C2h2 734..756
17 C2h2 762..784
18 C2h2 790..812
19 C2h2 818..840
20 C2h2 846..868
21 C2h2 874..896
22 C2h2 902..924
23 C2h2 930..952
24 C2h2 958..980
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription activator activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
...
Reverse:
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 MIRb 805 **** 99.0 Highly correlated
2 L2a 649 **** 99.0 Highly correlated
3 MER41B 558 **** 74.0 Weakly correlated
4 MIR 527 **** 99.0 Highly correlated
5 L2c 486 **** 99.0 Highly correlated
6 MIR3 432 **** 99.0 Highly correlated
7 MIRc 420 **** 99.0 Highly correlated
8 L2b 364 **** 99.0 Highly correlated
9 AluJb 292 n.s 74.0 Weakly correlated
10 MER41A 278 **** 74.0 Weakly correlated
11 L2 232 * 99.0 Highly correlated
12 AluSx1 227 n.s 74.0 Weakly correlated
13 AluJr 203 n.s 74.0 Weakly correlated
14 AluSx 194 n.s 74.0 Weakly correlated
15 AluJo 186 n.s 74.0 Weakly correlated
16 MLT1J 176 **** 99.0 Highly correlated
17 L3 159 **** 99.0 Highly correlated
18 AluSz 153 n.s 74.0 Weakly correlated
19 LTR8 147 **** 43.0 Weakly correlated
20 AluY 121 n.s 74.0 Weakly correlated
21 MLT1K 106 **** 99.0 Highly correlated
22 LTR54 97 **** 74.0 Weakly correlated
23 AluSq2 96 n.s 74.0 Weakly correlated
24 L1MEd 92 n.s 99.0 Highly correlated
25 MIR1_Amn 85 **** 319.0 Weakly correlated
26 LTR62 82 **** 74.0 Weakly correlated
27 FLAM_C 81 **** 74.0 Weakly correlated
28 MLT1B 80 * 99.0 Highly correlated
29 MLT1C 79 n.s 94.0 Weakly correlated
30 L1MB7 77 n.s 99.0 Highly correlated
31 MLT1L 74 **** 99.0 Highly correlated
32 AluSz6 65 n.s 74.0 Weakly correlated
33 MLT1H 65 **** 99.0 Highly correlated
34 AluSp 64 n.s 74.0 Weakly correlated
35 LTR18B 64 **** 43.0 Weakly correlated
36 MLT1J2 63 **** 99.0 Highly correlated
37 MER61E 59 **** 43.0 Weakly correlated
38 AluSx3 58 n.s 74.0 Weakly correlated
39 L1MC4 58 n.s 99.0 Highly correlated
40 AluSg 57 n.s 74.0 Weakly correlated
41 HAL1 56 n.s 99.0 Highly correlated
42 L1ME4a 56 n.s 99.0 Highly correlated
43 MLT1D 56 n.s 99.0 Highly correlated
44 L3b 54 **** 99.0 Highly correlated
45 L1MEg 51 n.s 99.0 Highly correlated
46 LTR8B 51 **** 43.0 Weakly correlated
47 L1M5 50 n.s 99.0 Highly correlated
48 LTR9 49 **** 43.0 Weakly correlated
49 MLT1I 49 *** 99.0 Highly correlated
50 MamRTE1 49 **** 99.0 Highly correlated
51 AluSc 47 n.s 74.0 Weakly correlated
52 MLT1H2 47 **** 99.0 Highly correlated
53 LTR5_Hs 45 **** 0.0 Weakly correlated
54 MER72 45 **** 43.0 Weakly correlated
55 L1MB8 44 n.s 99.0 Highly correlated
56 L1ME1 44 n.s 99.0 Highly correlated
57 LTR50 44 **** 99.0 Highly correlated
58 ERVL-E-int 43 n.s 99.0 Highly correlated
59 L1MB3 43 n.s 99.0 Highly correlated
60 MLT1A0 41 n.s 99.0 Highly correlated
61 AluSq 40 n.s 74.0 Weakly correlated
62 L1ME3G 40 n.s 99.0 Highly correlated
63 LTR13 40 **** 19.6 Weakly correlated
64 MLT1F 39 **** 99.0 Highly correlated
65 MLT1J1 39 **** 99.0 Highly correlated
66 L1MC5a 38 n.s 99.0 Highly correlated
67 LTR2 37 **** 28.9 Weakly correlated
68 LTR15 36 **** 28.9 Weakly correlated
69 LTR54B 36 **** 74.0 Weakly correlated
70 MSTA 36 n.s 43.0 Weakly correlated
71 L1MEc 35 n.s 99.0 Highly correlated
72 MER41C 35 **** 74.0 Weakly correlated
73 MER49 35 **** 43.0 Weakly correlated
74 L1MC3 33 n.s 99.0 Highly correlated
75 L1ME4b 33 n.s 99.0 Highly correlated
76 LTR73 33 **** 99.0 Highly correlated
77 MER41-int 33 **** 74.0 Weakly correlated
78 MER50 33 **** 43.0 Weakly correlated
79 L1M4 32 n.s 99.0 Highly correlated
80 LTR47A 32 **** 74.0 Weakly correlated
81 LTR53 32 **** 99.0 Highly correlated
82 LTR7C 32 **** 28.9 Weakly correlated
83 MER41E 32 **** 74.0 Weakly correlated
84 MER65A 32 **** 74.0 Weakly correlated
85 L1MC5 31 n.s 99.0 Highly correlated
86 MLT1F2 31 n.s 99.0 Highly correlated
87 MLT1O 31 **** 99.0 Highly correlated
88 AluJr4 30 n.s 74.0 Weakly correlated
89 LTR19B 30 **** 43.0 Weakly correlated
90 MLT1A 30 n.s 99.0 Highly correlated
91 AluSc8 29 n.s 74.0 Weakly correlated
92 L1MB4 29 n.s 99.0 Highly correlated
93 L1ME3Cz 29 n.s 99.0 Highly correlated
94 L4_A_Mam 29 * 99.0 Highly correlated
95 LTR19C 29 **** 43.0 Weakly correlated
96 LTR5B 29 **** 28.9 Weakly correlated
97 LTR8A 29 **** 43.0 Weakly correlated
98 LTR33 28 n.s 99.0 Highly correlated
99 LTR41C 28 **** 99.0 Highly correlated
100 LTR10A 27 **** 28.9 Weakly correlated
101 MLT1N2 27 *** 99.0 Highly correlated
102 THE1B 27 n.s 43.0 Weakly correlated
103 ERV3-16A3_I-int 26 n.s 99.0 Highly correlated
104 FLAM_A 26 n.s 74.0 Weakly correlated
105 LTR45C 26 **** 99.0 Highly correlated
106 L1MC4a 25 n.s 99.0 Highly correlated
107 L1ME3A 25 n.s 99.0 Highly correlated
108 L1MD2 24 n.s 99.0 Highly correlated
109 L1MD3 24 n.s 99.0 Highly correlated
110 L1MEf 24 n.s 99.0 Highly correlated
111 L1PB1 24 n.s 74.0 Weakly correlated
112 LTR13A 24 **** 28.9 Weakly correlated
113 LTR41 24 **** 99.0 Highly correlated
114 MER48 24 **** 28.9 Weakly correlated
115 LTR41B 23 **** 99.0 Highly correlated
116 LTR6A 23 **** 28.9 Weakly correlated
117 MER66C 23 **** 43.0 Weakly correlated
118 THE1D 23 n.s 43.0 Weakly correlated
119 L1PA16 22 n.s 74.0 Weakly correlated
120 LTR16C 22 n.s 99.0 Highly correlated
121 LTR16E1 22 **** 99.0 Highly correlated
122 LTR17 22 **** 28.9 Weakly correlated
123 LTR4 22 **** 28.9 Weakly correlated
124 LTR55 22 **** 99.0 Highly correlated
125 MER61F 22 **** 43.0 Weakly correlated
126 MER65D 22 **** 87.0 Weakly correlated
127 HERVH-int 21 n.s 28.9 Weakly correlated
128 L1MC1 21 n.s 99.0 Highly correlated
129 LTR6B 21 **** 19.6 Weakly correlated
130 MLT1F1 21 * 99.0 Highly correlated
131 MLT1M 21 **** 99.0 Highly correlated
132 AmnSINE1 20 **** 319.0 Weakly correlated
133 L1MA9 20 n.s 99.0 Highly correlated
134 L1P2 20 n.s 28.9 Weakly correlated
135 LTR76 20 **** 74.0 Weakly correlated
136 MER21C 20 n.s 99.0 Highly correlated
137 MLT1G3 20 ** 99.0 Highly correlated
138 FRAM 19 n.s 74.0 Weakly correlated
139 L1ME4c 19 n.s 99.0 Highly correlated
140 LTR46 19 **** 43.0 Weakly correlated
141 HERVL-int 18 n.s 74.0 Weakly correlated
142 L1MB2 18 n.s 99.0 Highly correlated
143 LTR52 18 **** 99.0 Highly correlated
144 AluYc 17 n.s 74.0 Weakly correlated
145 HUERS-P3-int 17 ** 43.0 Weakly correlated
146 L1M6 17 n.s 99.0 Highly correlated
147 LTR21A 17 **** 28.9 Weakly correlated
148 LTR25 17 **** 43.0 Weakly correlated
149 MER54A 17 **** 87.0 Weakly correlated
150 MER54B 17 **** 87.0 Weakly correlated
151 AluSx4 16 n.s 74.0 Weakly correlated
152 L1M1 16 n.s 74.0 Weakly correlated
153 L1MCa 16 n.s 99.0 Highly correlated
154 L1ME3 16 n.s 99.0 Highly correlated
155 LTR19A 16 **** 43.0 Weakly correlated
156 LTR67B 16 * 99.0 Highly correlated
157 LTR71B 16 **** 43.0 Weakly correlated
158 LTR82A 16 **** 99.0 Highly correlated
159 MER21B 16 n.s 99.0 Highly correlated
160 Plat_L3 16 *** 99.0 Highly correlated
161 Alu 15 **** 74.0 Weakly correlated
162 L1M4b 15 n.s 99.0 Highly correlated
163 L1ME3B 15 n.s 99.0 Highly correlated
164 L4_C_Mam 15 n.s 99.0 Highly correlated
165 LTR2C 15 **** 19.6 Weakly correlated
166 LTR33A 15 ** 99.0 Highly correlated
167 LTR78 15 n.s 99.0 Highly correlated
168 LTR9D 15 **** 43.0 Weakly correlated
169 MER4C 15 **** 74.0 Weakly correlated
170 MER83 15 **** 43.0 Weakly correlated
171 MLT2F 15 ** 99.0 Highly correlated
172 MSTD 15 n.s 74.0 Weakly correlated
173 MamSINE1 15 * 99.0 Highly correlated
174 AluSg4 14 n.s 74.0 Weakly correlated
175 AluSg7 14 n.s 74.0 Weakly correlated
176 CR1-3_Croc 14 **** 319.0 Weakly correlated
177 HERVK-int 14 ** 28.9 Weakly correlated
178 HUERS-P3b-int 14 *** 43.0 Weakly correlated
179 L1MCc 14 n.s 99.0 Highly correlated
180 L1ME2 14 n.s 99.0 Highly correlated
181 L1ME2z 14 n.s 99.0 Highly correlated
182 L1MEh 14 n.s 99.0 Highly correlated
183 L1PA11 14 n.s 74.0 Weakly correlated
184 L1PA7 14 n.s 74.0 Weakly correlated
185 LTR18A 14 **** 43.0 Weakly correlated
186 MER77B 14 ** 99.0 Highly correlated
187 MSTB 14 n.s 43.0 Weakly correlated
188 THE1C 14 n.s 43.0 Weakly correlated
189 ERVL-B4-int 13 n.s 99.0 Highly correlated
190 HAL1ME 13 n.s 99.0 Highly correlated
191 L1MA4A 13 n.s 87.0 Weakly correlated
192 L1PA6 13 n.s 28.9 Weakly correlated
193 LTR12F 13 **** 28.9 Weakly correlated
194 LTR37A 13 ** 99.0 Highly correlated
195 MER4-int 13 n.s 74.0 Weakly correlated
196 MER41D 13 **** 74.0 Weakly correlated
197 MER4B 13 n.s 74.0 Weakly correlated
198 HERV1_LTRe 12 **** 43.0 Weakly correlated
199 L1MA4 12 n.s 87.0 Weakly correlated
200 L2-3_Crp 12 ** 431.0 Weakly correlated
201 LTR39 12 * 43.0 Weakly correlated
202 LTR49-int 12 n.s 74.0 Weakly correlated
203 LTR75_1 12 **** 99.0 Highly correlated
204 LTR78B 12 n.s 99.0 Highly correlated
205 MER57B1 12 *** 43.0 Weakly correlated
206 MER77 12 * 99.0 Highly correlated
207 MER89 12 ** 99.0 Highly correlated
208 MLT1G1 12 n.s 99.0 Highly correlated
209 MLT2D 12 n.s 99.0 Highly correlated
210 AluSc5 11 n.s 74.0 Weakly correlated
211 HERVS71-int 11 * 28.9 Weakly correlated
212 L1MB5 11 n.s 99.0 Highly correlated
213 L1ME3E 11 n.s 99.0 Highly correlated
214 L1ME5 11 n.s 99.0 Highly correlated
215 L1PA2 11 n.s 15.2 Weakly correlated
216 LFSINE_Vert 11 *** 319.0 Weakly correlated
217 LTR104_Mam 11 ** 99.0 Highly correlated
218 LTR23 11 **** 74.0 Weakly correlated
219 LTR36 11 **** 74.0 Weakly correlated
220 LTR56 11 *** 74.0 Weakly correlated
221 MER11A 11 n.s 28.9 Weakly correlated
222 MER34 11 ** 87.0 Weakly correlated
223 MER4A1 11 n.s 74.0 Weakly correlated
224 MER57A-int 11 n.s 43.0 Weakly correlated
225 MER90a 11 ** 99.0 Highly correlated
226 MLT2B4 11 n.s 99.0 Highly correlated
227 THE1A 11 n.s 43.0 Weakly correlated
228 HERV17-int 10 n.s 28.9 Weakly correlated
229 HERV1_LTRa 10 **** 28.9 Weakly correlated
230 HERVIP10FH-int 10 * 28.9 Weakly correlated
231 L1MA3 10 n.s 74.0 Weakly correlated
232 L1MA8 10 n.s 87.0 Weakly correlated
233 L1MC 10 n.s 99.0 Highly correlated
234 L1MEi 10 n.s 99.0 Highly correlated
235 L1PA10 10 n.s 74.0 Weakly correlated
236 L1PA5 10 n.s 19.6 Weakly correlated
237 L1PBa 10 n.s 74.0 Weakly correlated
238 L1PREC2 10 n.s 43.0 Weakly correlated
239 L4_B_Mam 10 n.s 99.0 Highly correlated
240 LTR16A1 10 n.s 99.0 Highly correlated
241 LTR79 10 n.s 99.0 Highly correlated
242 MER21A 10 n.s 74.0 Weakly correlated
243 MER4A 10 ** 74.0 Weakly correlated
244 MER51D 10 **** 43.0 Weakly correlated
245 MER52C 10 ** 74.0 Weakly correlated
246 MER90 10 *** 99.0 Highly correlated
247 MLT1A1 10 n.s 87.0 Weakly correlated
248 MLT1E1A 10 n.s 99.0 Highly correlated
249 MLT1G 10 n.s 99.0 Highly correlated
250 MLT1H1 10 n.s 99.0 Highly correlated
251 MamRep605 10 n.s 99.0 Highly correlated
252 HERVK22-int 9 n.s 43.0 Weakly correlated
253 L1MC2 9 n.s 99.0 Highly correlated
254 L1MD 9 n.s 99.0 Highly correlated
255 L1MDa 9 n.s 99.0 Highly correlated
256 L1PA15-16 9 n.s 74.0 Weakly correlated
257 L1PA3 9 n.s 19.6 Weakly correlated
258 L1PB4 9 n.s 99.0 Highly correlated
259 L2-1_AMi 9 *** 319.0 Weakly correlated
260 LTR16A 9 n.s 99.0 Highly correlated
261 LTR16A2 9 n.s 99.0 Highly correlated
262 LTR18C 9 **** 43.0 Weakly correlated
263 LTR24 9 **** 74.0 Weakly correlated
264 LTR3 9 **** 28.9 Weakly correlated
265 LTR31 9 **** 74.0 Weakly correlated
266 LTR47A2 9 **** 74.0 Weakly correlated
267 LTR51 9 *** 74.0 Weakly correlated
268 MER34A 9 * 99.0 Highly correlated
269 MER4D1 9 n.s 74.0 Weakly correlated
270 MER51A 9 * 43.0 Weakly correlated
271 MER57-int 9 n.s 87.0 Weakly correlated
272 MER61A 9 ** 43.0 Weakly correlated
273 MER74A 9 n.s 99.0 Highly correlated
274 MER87 9 **** 43.0 Weakly correlated
275 MLT1E2 9 n.s 99.0 Highly correlated
276 HAL1b 8 n.s 99.0 Highly correlated
277 HERVH48-int 8 ** 28.9 Weakly correlated
278 HERVP71A-int 8 * 43.0 Weakly correlated
279 L1M4c 8 n.s 99.0 Highly correlated
280 L1ME3C 8 n.s 99.0 Highly correlated
281 L1ME3D 8 n.s 99.0 Highly correlated
282 L1ME3F 8 n.s 99.0 Highly correlated
283 L1PA13 8 n.s 74.0 Weakly correlated
284 LTR12C 8 n.s 19.6 Weakly correlated
285 LTR14 8 **** 28.9 Weakly correlated
286 LTR65 8 **** 99.0 Highly correlated
287 LTR85a 8 * 99.0 Highly correlated
288 LTR9B 8 * 43.0 Weakly correlated
289 MER39B 8 n.s 74.0 Weakly correlated
290 MER74B 8 * 99.0 Highly correlated
291 MLT1J-int 8 n.s 99.0 Highly correlated
292 MamGypLTR2c 8 ** 99.0 Highly correlated
293 MamGypLTR3 8 *** 99.0 Highly correlated
294 PRIMA41-int 8 n.s 74.0 Weakly correlated
295 SVA_A 8 n.s 19.6 Weakly correlated
296 ERV24B_Prim-int 7 ** 74.0 Weakly correlated
297 ERV24_Prim-int 7 * 74.0 Weakly correlated
298 HERV15-int 7 ** 28.9 Weakly correlated
299 HERVL18-int 7 n.s 43.0 Weakly correlated
300 HUERS-P1-int 7 n.s 43.0 Weakly correlated
301 L1M3 7 n.s 99.0 Highly correlated
302 L1MB1 7 n.s 99.0 Highly correlated
303 L1MD1 7 n.s 99.0 Highly correlated
304 L1PA17 7 n.s 74.0 Weakly correlated
305 LTR1A2 7 n.s 43.0 Weakly correlated
306 LTR29 7 ** 43.0 Weakly correlated
307 LTR71A 7 **** 43.0 Weakly correlated
308 LTR85b 7 * 99.0 Highly correlated
309 MER39 7 n.s 74.0 Weakly correlated
310 MER41G 7 **** 74.0 Weakly correlated
311 MER68 7 n.s 99.0 Highly correlated
312 MER74C 7 **** 99.0 Highly correlated
313 MLT1E3 7 n.s 99.0 Highly correlated
314 MLT2B2 7 n.s 99.0 Highly correlated
315 MamGypLTR1a 7 * 99.0 Highly correlated
316 MamRep1527 7 * 99.0 Highly correlated
317 AluYj4 6 n.s 0.0 Weakly correlated
318 ERVL-int 6 n.s 99.0 Highly correlated
319 FAM 6 n.s 87.0 Weakly correlated
320 HERV1_LTRc 6 **** 28.9 Weakly correlated
321 L1P3 6 n.s 74.0 Weakly correlated
322 LTR10E 6 ** 28.9 Weakly correlated
323 LTR16 6 n.s 99.0 Highly correlated
324 LTR26 6 n.s 74.0 Weakly correlated
325 LTR33A_ 6 n.s 99.0 Highly correlated
326 LTR33B 6 n.s 99.0 Highly correlated
327 LTR35A 6 **** 43.0 Weakly correlated
328 LTR37-int 6 n.s 99.0 Highly correlated
329 LTR43 6 ** 74.0 Weakly correlated
330 LTR75 6 *** 99.0 Highly correlated
331 LTR77 6 **** 94.0 Weakly correlated
332 LTR88b 6 n.s 99.0 Highly correlated
333 LTR91 6 **** 99.0 Highly correlated
334 MER110 6 * 99.0 Highly correlated
335 MER21-int 6 n.s 99.0 Highly correlated
336 MER4D 6 n.s 74.0 Weakly correlated
337 MER51E 6 **** 43.0 Weakly correlated
338 MER57B2 6 n.s 43.0 Weakly correlated
339 MER65B 6 **** 74.0 Weakly correlated
340 MER67C 6 n.s 99.0 Highly correlated
341 MER68B 6 ** 99.0 Highly correlated
342 MamGypLTR3a 6 n.s 99.0 Highly correlated
343 MamGypsy2-I 6 n.s 99.0 Highly correlated
344 X6A_LINE 6 ** 99.0 Highly correlated
345 AluYm1 5 n.s 19.6 Weakly correlated
346 HERV16-int 5 n.s 99.0 Highly correlated
347 HERVE-int 5 n.s 19.6 Weakly correlated
348 L1M2 5 n.s 99.0 Highly correlated
349 L1M4a2 5 n.s 99.0 Highly correlated
350 L1M7 5 n.s 99.0 Highly correlated
351 L1MA2 5 n.s 74.0 Weakly correlated
352 L1MA5A 5 n.s 87.0 Weakly correlated
353 LTR101_Mam 5 n.s 99.0 Highly correlated
354 LTR33C 5 n.s 99.0 Highly correlated
355 LTR47B2 5 *** 74.0 Weakly correlated
356 LTR64 5 ** 74.0 Weakly correlated
357 LTR81B 5 n.s 99.0 Highly correlated
358 LTR85c 5 n.s 99.0 Highly correlated
359 LTR89 5 n.s 99.0 Highly correlated
360 MER11D 5 * 19.6 Weakly correlated
361 MER31B 5 n.s 99.0 Highly correlated
362 MER34C2 5 * 74.0 Weakly correlated
363 MER4CL34 5 n.s 43.0 Weakly correlated
364 MER4E 5 n.s 74.0 Weakly correlated
365 MER50-int 5 n.s 43.0 Weakly correlated
366 MER51B 5 n.s 43.0 Weakly correlated
367 MER57F 5 ** 74.0 Weakly correlated
368 MER61B 5 * 43.0 Weakly correlated
369 MER61C 5 ** 43.0 Weakly correlated
370 MER65C 5 n.s 74.0 Weakly correlated
371 MER66D 5 *** 43.0 Weakly correlated
372 MER67A 5 ** 99.0 Highly correlated
373 MER92C 5 **** 99.0 Highly correlated
374 MLT2B1 5 n.s 99.0 Highly correlated
375 MLT2E 5 ** 99.0 Highly correlated
376 MSTB1 5 n.s 74.0 Weakly correlated
377 X6B_LINE 5 ** 99.0 Highly correlated
378 X7A_LINE 5 ** 319.0 Weakly correlated
379 AluYb8 4 n.s 15.2 Weakly correlated
380 AluYh3 4 n.s 15.2 Weakly correlated
381 AluYk3 4 n.s 19.6 Weakly correlated
382 ERV3-16A3_LTR 4 n.s 99.0 Highly correlated
383 HAL1M8 4 n.s 99.0 Highly correlated
384 HERV3-int 4 n.s 28.9 Weakly correlated
385 HERVFH21-int 4 * 28.9 Weakly correlated
386 HERVL40-int 4 n.s 99.0 Highly correlated
387 HERVL74-int 4 n.s 99.0 Highly correlated
388 L1M3c 4 n.s 99.0 Highly correlated
389 L1M8 4 n.s 99.0 Highly correlated
390 L1MA10 4 n.s 99.0 Highly correlated
391 L1MA5 4 n.s 87.0 Weakly correlated
392 L1MA7 4 n.s 87.0 Weakly correlated
393 L1MDb 4 n.s 99.0 Highly correlated
394 L1MEb 4 n.s 99.0 Highly correlated
395 L1MEj 4 n.s 99.0 Highly correlated
396 L1PA4 4 n.s 19.6 Weakly correlated
397 L1PB3 4 n.s 74.0 Weakly correlated
398 L1PBa1 4 n.s 74.0 Weakly correlated
399 LOR1b 4 n.s 74.0 Weakly correlated
400 LTR1 4 * 43.0 Weakly correlated
401 LTR10B 4 **** 28.9 Weakly correlated
402 LTR10C 4 n.s 28.9 Weakly correlated
403 LTR10F 4 n.s 28.9 Weakly correlated
404 LTR12E 4 * 19.6 Weakly correlated
405 LTR13_ 4 *** 28.9 Weakly correlated
406 LTR16D1 4 *** 99.0 Highly correlated
407 LTR25-int 4 n.s 43.0 Weakly correlated
408 LTR40b 4 n.s 99.0 Highly correlated
409 LTR43-int 4 ** 74.0 Weakly correlated
410 LTR44 4 ** 74.0 Weakly correlated
411 LTR49 4 n.s 74.0 Weakly correlated
412 LTR81A 4 n.s 99.0 Highly correlated
413 LTR83 4 n.s 99.0 Highly correlated
414 LTR87 4 n.s 99.0 Highly correlated
415 MER101-int 4 n.s 74.0 Weakly correlated
416 MER34A1 4 n.s 99.0 Highly correlated
417 MER34D 4 ** 74.0 Weakly correlated
418 MER4B-int 4 n.s 99.0 Highly correlated
419 MER51C 4 ** 43.0 Weakly correlated
420 MER52A 4 n.s 74.0 Weakly correlated
421 MER57C2 4 * 87.0 Weakly correlated
422 MER57E3 4 ** 74.0 Weakly correlated
423 MER61-int 4 n.s 43.0 Weakly correlated
424 MER65-int 4 n.s 87.0 Weakly correlated
425 MER66-int 4 n.s 43.0 Weakly correlated
426 MER66A 4 * 43.0 Weakly correlated
427 MER67B 4 n.s 99.0 Highly correlated
428 MER72B 4 ** 43.0 Weakly correlated
429 MER73 4 * 87.0 Weakly correlated
430 MLT1C-int 4 n.s 94.0 Weakly correlated
431 MLT1E1 4 n.s 99.0 Highly correlated
432 MLT1J1-int 4 n.s 99.0 Highly correlated
433 MLT1K-int 4 *** 99.0 Highly correlated
434 MLT2A2 4 n.s 74.0 Weakly correlated
435 MLT2C1 4 n.s 99.0 Highly correlated
436 MamGypsy2-LTR 4 ** 99.0 Highly correlated
437 PRIMA4_LTR 4 * 74.0 Weakly correlated
438 SVA_F 4 n.s 0.0 Weakly correlated
439 THE1A-int 4 n.s 43.0 Weakly correlated
440 AluSq4 3 n.s 74.0 Weakly correlated
441 AluYa5 3 n.s 15.2 Weakly correlated
442 AmnSINE2 3 ** 319.0 Weakly correlated
443 HERV1_I-int 3 n.s 43.0 Weakly correlated
444 HERVK14-int 3 n.s 28.9 Weakly correlated
445 HERVK3-int 3 n.s 28.9 Weakly correlated
446 HERVKC4-int 3 * 28.9 Weakly correlated
447 Harlequin-int 3 n.s 74.0 Weakly correlated
448 L1HS 3 n.s 8.6 Weakly correlated
449 L1M3a 3 n.s 99.0 Highly correlated
450 L1M3e 3 n.s 99.0 Highly correlated
451 L1M4a1 3 n.s 99.0 Highly correlated
452 L1MA6 3 n.s 87.0 Weakly correlated
453 L1MEg1 3 n.s 99.0 Highly correlated
454 L1P1 3 n.s 19.6 Weakly correlated
455 L1P4 3 n.s 74.0 Weakly correlated
456 L1PA8 3 n.s 74.0 Weakly correlated
457 LTR12 3 n.s 28.9 Weakly correlated
458 LTR14B 3 n.s 28.9 Weakly correlated
459 LTR14C 3 * 28.9 Weakly correlated
460 LTR16B1 3 n.s 99.0 Highly correlated
461 LTR16E2 3 n.s 99.0 Highly correlated
462 LTR19-int 3 n.s 43.0 Weakly correlated
463 LTR26E 3 ** 74.0 Weakly correlated
464 LTR28C 3 n.s 43.0 Weakly correlated
465 LTR32 3 n.s 43.0 Weakly correlated
466 LTR37B 3 n.s 99.0 Highly correlated
467 LTR3A 3 * 28.9 Weakly correlated
468 LTR43B 3 * 74.0 Weakly correlated
469 LTR47B3 3 ** 74.0 Weakly correlated
470 LTR53-int 3 n.s 99.0 Highly correlated
471 LTR53B 3 * 99.0 Highly correlated
472 LTR5A 3 n.s 19.6 Weakly correlated
473 LTR84b 3 n.s 99.0 Highly correlated
474 MER110A 3 n.s 99.0 Highly correlated
475 MER31-int 3 n.s 99.0 Highly correlated
476 MER31A 3 n.s 87.0 Weakly correlated
477 MER50B 3 n.s 43.0 Weakly correlated
478 MER57A1 3 n.s 43.0 Weakly correlated
479 MER57C1 3 ** 74.0 Weakly correlated
480 MER57D 3 n.s 87.0 Weakly correlated
481 MER66B 3 n.s 43.0 Weakly correlated
482 MER70C 3 * 99.0 Highly correlated
483 MER76 3 n.s 99.0 Highly correlated
484 MER84 3 * 43.0 Weakly correlated
485 MER88 3 ** 99.0 Highly correlated
486 MER92B 3 n.s 99.0 Highly correlated
487 MLT1F2-int 3 n.s 99.0 Highly correlated
488 PABL_A 3 n.s 43.0 Weakly correlated
489 Penelope1_Vert 3 * 319.0 Weakly correlated
490 SVA_B 3 n.s 15.2 Weakly correlated
491 THE1D-int 3 n.s 28.9 Weakly correlated
492 X7B_LINE 3 n.s 319.0 Weakly correlated
493 X7C_LINE 3 * 319.0 Weakly correlated
494 AluSq10 2 n.s 74.0 Weakly correlated
495 AluYk4 2 n.s 15.2 Weakly correlated
496 CR1_Mam 2 n.s 99.0 Highly correlated
497 ERVL47-int 2 n.s 74.0 Weakly correlated
498 HERV-Fc1-int 2 ** 8.6 Weakly correlated
499 HERV1_LTRd 2 **** 43.0 Weakly correlated
500 HERV9NC-int 2 n.s 19.6 Weakly correlated
501 HERVFH19-int 2 n.s 43.0 Weakly correlated
502 HERVI-int 2 n.s 28.9 Weakly correlated
503 HERVK13-int 2 n.s 19.6 Weakly correlated
504 HERVL32-int 2 n.s 43.0 Weakly correlated
505 L1M2a 2 n.s 87.0 Weakly correlated
506 L1M3f 2 n.s 87.0 Weakly correlated
507 L1M6B 2 n.s 99.0 Highly correlated
508 L1MA1 2 n.s 74.0 Weakly correlated
509 L1MEg2 2 n.s 99.0 Highly correlated
510 L1P4a 2 n.s 74.0 Weakly correlated
511 L1PA15 2 n.s 74.0 Weakly correlated
512 L1PA8A 2 n.s 74.0 Weakly correlated
513 L1PB 2 n.s 74.0 Weakly correlated
514 L1PB2 2 n.s 74.0 Weakly correlated
515 LOR1-int 2 n.s 74.0 Weakly correlated
516 LOR1a 2 n.s 74.0 Weakly correlated
517 LTR102_Mam 2 n.s 99.0 Highly correlated
518 LTR108e_Mam 2 * 99.0 Highly correlated
519 LTR12D 2 n.s 19.6 Weakly correlated
520 LTR16B2 2 n.s 99.0 Highly correlated
521 LTR23-int 2 * 74.0 Weakly correlated
522 LTR26C 2 n.s 0.0 Weakly correlated
523 LTR27C 2 n.s 43.0 Weakly correlated
524 LTR27D 2 n.s 43.0 Weakly correlated
525 LTR2B 2 n.s 19.6 Weakly correlated
526 LTR30 2 n.s 28.9 Weakly correlated
527 LTR35 2 * 43.0 Weakly correlated
528 LTR38A1 2 * 74.0 Weakly correlated
529 LTR40a 2 n.s 99.0 Highly correlated
530 LTR42 2 n.s 74.0 Weakly correlated
531 LTR45B 2 n.s 74.0 Weakly correlated
532 LTR47B 2 *** 74.0 Weakly correlated
533 LTR47B4 2 * 74.0 Weakly correlated
534 LTR57 2 n.s 74.0 Weakly correlated
535 LTR58 2 ** 99.0 Highly correlated
536 LTR60 2 *** 43.0 Weakly correlated
537 LTR60B 2 n.s 74.0 Weakly correlated
538 LTR61 2 n.s 43.0 Weakly correlated
539 LTR81C 2 n.s 99.0 Highly correlated
540 LTR86C 2 n.s 99.0 Highly correlated
541 LTR9A1 2 n.s 43.0 Weakly correlated
542 MER101 2 n.s 74.0 Weakly correlated
543 MER34-int 2 n.s 99.0 Highly correlated
544 MER34B 2 n.s 87.0 Weakly correlated
545 MER4D0 2 n.s 74.0 Weakly correlated
546 MER50C 2 ** 43.0 Weakly correlated
547 MER52-int 2 n.s 99.0 Highly correlated
548 MER61D 2 n.s 43.0 Weakly correlated
549 MER70B 2 n.s 87.0 Weakly correlated
550 MER83A-int 2 n.s 99.0 Highly correlated
551 MER83B 2 * 43.0 Weakly correlated
552 MER83C 2 * 43.0 Weakly correlated
553 MER87B 2 n.s 74.0 Weakly correlated
554 MLT1B-int 2 n.s 99.0 Highly correlated
555 MLT1E 2 n.s 99.0 Highly correlated
556 MLT1H2-int 2 n.s 99.0 Highly correlated
557 MLT1J2-int 2 n.s 99.0 Highly correlated
558 MLT2A1 2 n.s 74.0 Weakly correlated
559 MLT2B3 2 n.s 99.0 Highly correlated
560 MSTA-int 2 n.s 43.0 Weakly correlated
561 MSTA1 2 n.s 74.0 Weakly correlated
562 MSTC 2 n.s 74.0 Weakly correlated
563 MSTD-int 2 n.s 74.0 Weakly correlated
564 MamGypLTR1b 2 n.s 99.0 Highly correlated
565 PABL_A-int 2 n.s 74.0 Weakly correlated
566 SVA_D 2 n.s 15.2 Weakly correlated
567 SVA_E 2 n.s 0.0 Weakly correlated
568 THE1C-int 2 n.s 43.0 Weakly correlated
569 X1_LINE 2 ** 319.0 Weakly correlated
570 X9_LINE 2 * 319.0 Weakly correlated
571 AluYg6 1 n.s 15.2 Weakly correlated
572 AluYh9 1 * 15.2 Weakly correlated
573 AluYk2 1 n.s 19.6 Weakly correlated
574 HERV35I-int 1 n.s 43.0 Weakly correlated
575 HERV4_I-int 1 n.s 43.0 Weakly correlated
576 HERV9-int 1 n.s 28.9 Weakly correlated
577 HERVE_a-int 1 n.s 28.9 Weakly correlated
578 HERVK9-int 1 n.s 28.9 Weakly correlated
579 L1M2c 1 n.s 87.0 Weakly correlated
580 L1MCb 1 n.s 99.0 Highly correlated
581 L1MEa 1 n.s 99.0 Highly correlated
582 L1P4d 1 n.s 74.0 Weakly correlated
583 L1P5 1 n.s 74.0 Weakly correlated
584 L1PA12 1 n.s 74.0 Weakly correlated
585 L1PA14 1 n.s 74.0 Weakly correlated
586 L5 1 n.s 99.0 Highly correlated
587 LTR103b_Mam 1 n.s 99.0 Highly correlated
588 LTR105_Mam 1 n.s 99.0 Highly correlated
589 LTR10B1 1 n.s 28.9 Weakly correlated
590 LTR10B2 1 n.s 28.9 Weakly correlated
591 LTR10D 1 n.s 28.9 Weakly correlated
592 LTR16B 1 n.s 99.0 Highly correlated
593 LTR16D 1 n.s 99.0 Highly correlated
594 LTR16D2 1 n.s 99.0 Highly correlated
595 LTR1B1 1 n.s 43.0 Weakly correlated
596 LTR24C 1 n.s 74.0 Weakly correlated
597 LTR2752 1 n.s 43.0 Weakly correlated
598 LTR38 1 n.s 74.0 Weakly correlated
599 LTR38-int 1 n.s 74.0 Weakly correlated
600 LTR38B 1 n.s 74.0 Weakly correlated
601 LTR3B 1 n.s 28.9 Weakly correlated
602 LTR3B_ 1 n.s 28.9 Weakly correlated
603 LTR40A1 1 n.s 99.0 Highly correlated
604 LTR40c 1 n.s 99.0 Highly correlated
605 LTR45 1 n.s 99.0 Highly correlated
606 LTR46-int 1 n.s 74.0 Weakly correlated
607 LTR48 1 n.s 74.0 Weakly correlated
608 LTR59 1 n.s 43.0 Weakly correlated
609 LTR7 1 n.s 19.6 Weakly correlated
610 LTR7B 1 n.s 28.9 Weakly correlated
611 LTR80B 1 n.s 99.0 Highly correlated
612 LTR81AB 1 n.s 99.0 Highly correlated
613 LTR82B 1 n.s 99.0 Highly correlated
614 LTR84a 1 n.s 99.0 Highly correlated
615 LTR90A 1 n.s 99.0 Highly correlated
616 MER101B 1 n.s 87.0 Weakly correlated
617 MER110-int 1 n.s 99.0 Highly correlated
618 MER11C 1 n.s 19.6 Weakly correlated
619 MER34C 1 n.s 87.0 Weakly correlated
620 MER4A1_ 1 n.s 74.0 Weakly correlated
621 MER51-int 1 n.s 43.0 Weakly correlated
622 MER52D 1 n.s 74.0 Weakly correlated
623 MER70A 1 n.s 87.0 Weakly correlated
624 MER92A 1 n.s 99.0 Highly correlated
625 MER9a3 1 n.s 28.9 Weakly correlated
626 MLT1A-int 1 n.s 99.0 Highly correlated
627 MLT1A1-int 1 n.s 87.0 Weakly correlated
628 MLT1D-int 1 n.s 99.0 Highly correlated
629 MLT1F-int 1 n.s 99.0 Highly correlated
630 MLT1G1-int 1 n.s 99.0 Highly correlated
631 MLT1I-int 1 n.s 99.0 Highly correlated
632 MSTB-int 1 n.s 43.0 Weakly correlated
633 MSTB1-int 1 n.s 74.0 Weakly correlated
634 MamGyp-int 1 n.s 99.0 Highly correlated
635 MamGypLTR2b 1 n.s 99.0 Highly correlated
636 MamRep1151 1 n.s 99.0 Highly correlated
637 Mam_R4 1 n.s 99.0 Highly correlated
638 PABL_B-int 1 n.s 74.0 Weakly correlated
639 THE1B-int 1 n.s 43.0 Weakly correlated
640 X8_LINE 1 * 319.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 MIRb 94 n.s 99.0 Highly correlated
2 L2a 88 n.s 99.0 Highly correlated
3 L2c 74 n.s 99.0 Highly correlated
4 MIR 51 n.s 99.0 Highly correlated
5 L2b 43 n.s 99.0 Highly correlated
6 L2 43 n.s 99.0 Highly correlated
7 MIRc 41 n.s 99.0 Highly correlated
8 LTR54 34 **** 74.0 Weakly correlated
9 MIR3 33 n.s 99.0 Highly correlated
10 LTR62 32 **** 74.0 Weakly correlated
11 MER41B 28 *** 74.0 Weakly correlated
12 MER61E 26 **** 43.0 Weakly correlated
13 LTR15 20 **** 28.9 Weakly correlated
14 LTR53 18 **** 99.0 Highly correlated
15 L3 18 n.s 99.0 Highly correlated
16 MER72 17 **** 43.0 Weakly correlated
17 LTR2 17 **** 28.9 Weakly correlated
18 LTR19B 16 **** 43.0 Weakly correlated
19 MER49 16 ** 43.0 Weakly correlated
20 LTR45C 13 **** 99.0 Highly correlated
21 MER61F 13 **** 43.0 Weakly correlated
22 LTR19C 12 **** 43.0 Weakly correlated
23 LTR13A 12 **** 28.9 Weakly correlated
24 LTR73 12 **** 99.0 Highly correlated
25 MER41A 11 n.s 74.0 Weakly correlated
26 HAL1 11 n.s 99.0 Highly correlated
27 HERVH-int 11 n.s 28.9 Weakly correlated
28 L1MEd 11 n.s 99.0 Highly correlated
29 MLT1L 11 n.s 99.0 Highly correlated
30 AluJb 11 n.s 74.0 Weakly correlated
31 LTR8B 10 n.s 43.0 Weakly correlated
32 LTR5_Hs 10 n.s 0.0 Weakly correlated
33 MLT1B 10 n.s 99.0 Highly correlated
34 LTR6B 10 **** 19.6 Weakly correlated
35 L3b 10 n.s 99.0 Highly correlated
36 LTR6A 10 **** 28.9 Weakly correlated
37 MLT1J 10 n.s 99.0 Highly correlated
38 AluJo 10 n.s 74.0 Weakly correlated
39 MER54B 9 *** 87.0 Weakly correlated
40 LTR5B 9 * 28.9 Weakly correlated
41 LTR76 9 **** 74.0 Weakly correlated
42 MLT1D 9 n.s 99.0 Highly correlated
43 MLT1C 9 n.s 94.0 Weakly correlated
44 AluJr 9 n.s 74.0 Weakly correlated
45 LTR21A 9 **** 28.9 Weakly correlated
46 MER41E 9 **** 74.0 Weakly correlated
47 LTR71B 9 **** 43.0 Weakly correlated
48 L1MEg 8 n.s 99.0 Highly correlated
49 LTR52 8 * 99.0 Highly correlated
50 LTR55 8 *** 99.0 Highly correlated
51 ERVL-E-int 8 n.s 99.0 Highly correlated
52 MER4C 7 ** 74.0 Weakly correlated
53 MER74B 7 n.s 99.0 Highly correlated
54 MLT1H 7 n.s 99.0 Highly correlated
55 LTR8 7 n.s 43.0 Weakly correlated
56 MLT1K 7 n.s 99.0 Highly correlated
57 MER50 7 n.s 43.0 Weakly correlated
58 MIR1_Amn 7 n.s 319.0 Weakly correlated
59 LTR75_1 6 **** 99.0 Highly correlated
60 LTR13 6 n.s 19.6 Weakly correlated
61 LTR9 6 n.s 43.0 Weakly correlated
62 HERV1_LTRa 6 **** 28.9 Weakly correlated
63 L1MEf 6 n.s 99.0 Highly correlated
64 LTR24 6 *** 74.0 Weakly correlated
65 LTR4 6 **** 28.9 Weakly correlated
66 MER11A 6 n.s 28.9 Weakly correlated
67 L1MB7 6 n.s 99.0 Highly correlated
68 L1MC4 6 n.s 99.0 Highly correlated
69 MLT1J2 6 n.s 99.0 Highly correlated
70 MLT1J1 5 n.s 99.0 Highly correlated
71 LTR9D 5 n.s 43.0 Weakly correlated
72 MLT1A 5 n.s 99.0 Highly correlated
73 L1MCa 5 n.s 99.0 Highly correlated
74 L1MEc 5 n.s 99.0 Highly correlated
75 LTR29 5 n.s 43.0 Weakly correlated
76 LTR8A 5 n.s 43.0 Weakly correlated
77 MamRTE1 5 n.s 99.0 Highly correlated
78 L2-3_Crp 5 n.s 431.0 Weakly correlated
79 L4_A_Mam 5 n.s 99.0 Highly correlated
80 MER65D 5 ** 87.0 Weakly correlated
81 MER89 5 n.s 99.0 Highly correlated
82 LTR25 5 * 43.0 Weakly correlated
83 MER34 5 n.s 87.0 Weakly correlated
84 ERV3-16A3_I-int 5 n.s 99.0 Highly correlated
85 MER4A1 5 n.s 74.0 Weakly correlated
86 MER77 5 n.s 99.0 Highly correlated
87 MER90a 5 n.s 99.0 Highly correlated
88 MER4D 4 n.s 74.0 Weakly correlated
89 L1PA11 4 n.s 74.0 Weakly correlated
90 LTR50 4 n.s 99.0 Highly correlated
91 MER87 4 ** 43.0 Weakly correlated
92 MLT1F1 4 n.s 99.0 Highly correlated
93 AluSz6 4 n.s 74.0 Weakly correlated
94 HERV1_LTRe 4 **** 43.0 Weakly correlated
95 LTR19A 4 n.s 43.0 Weakly correlated
96 LTR16C 4 n.s 99.0 Highly correlated
97 MLT1H2 4 n.s 99.0 Highly correlated
98 MLT1I 4 n.s 99.0 Highly correlated
99 L1ME3G 4 n.s 99.0 Highly correlated
100 MER34A 4 n.s 99.0 Highly correlated
101 L1MC5 4 n.s 99.0 Highly correlated
102 LTR16E1 4 n.s 99.0 Highly correlated
103 LTR36 4 n.s 74.0 Weakly correlated
104 L1ME1 4 n.s 99.0 Highly correlated
105 MER83 4 n.s 43.0 Weakly correlated
106 THE1B 4 n.s 43.0 Weakly correlated
107 ERVL-B4-int 3 n.s 99.0 Highly correlated
108 LTR47A2 3 * 74.0 Weakly correlated
109 LTR54B 3 n.s 74.0 Weakly correlated
110 MER4CL34 3 n.s 43.0 Weakly correlated
111 MamRep605 3 n.s 99.0 Highly correlated
112 MER110 3 n.s 99.0 Highly correlated
113 MER34A1 3 n.s 99.0 Highly correlated
114 MER4B 3 n.s 74.0 Weakly correlated
115 MER66C 3 n.s 43.0 Weakly correlated
116 PRIMA4_LTR 3 n.s 74.0 Weakly correlated
117 L1M5 3 n.s 99.0 Highly correlated
118 L1MB8 3 n.s 99.0 Highly correlated
119 L1MD1 3 n.s 99.0 Highly correlated
120 L1MD3 3 n.s 99.0 Highly correlated
121 L1ME3Cz 3 n.s 99.0 Highly correlated
122 L1MB4 3 n.s 99.0 Highly correlated
123 L1ME2z 3 n.s 99.0 Highly correlated
124 L1ME3A 3 n.s 99.0 Highly correlated
125 L4_C_Mam 3 n.s 99.0 Highly correlated
126 LTR101_Mam 3 n.s 99.0 Highly correlated
127 LTR46 3 * 43.0 Weakly correlated
128 MER54A 3 n.s 87.0 Weakly correlated
129 L1MB3 3 n.s 99.0 Highly correlated
130 L1ME4b 3 n.s 99.0 Highly correlated
131 L1MEh 3 n.s 99.0 Highly correlated
132 MER68 3 n.s 99.0 Highly correlated
133 HERV1_LTRc 3 **** 28.9 Weakly correlated
134 LTR47A 3 n.s 74.0 Weakly correlated
135 MER11D 3 n.s 19.6 Weakly correlated
136 MER4A 3 n.s 74.0 Weakly correlated
137 MLT1F2 3 n.s 99.0 Highly correlated
138 MLT1N2 3 n.s 99.0 Highly correlated
139 Plat_L3 3 n.s 99.0 Highly correlated
140 HERVK22-int 3 n.s 43.0 Weakly correlated
141 L1PA10 3 n.s 74.0 Weakly correlated
142 LTR18B 3 n.s 43.0 Weakly correlated
143 MLT1O 3 n.s 99.0 Highly correlated
144 THE1C 3 n.s 43.0 Weakly correlated
145 THE1D 3 n.s 43.0 Weakly correlated
146 MER90 3 n.s 99.0 Highly correlated
147 AluSx3 2 n.s 74.0 Weakly correlated
148 L1MB2 2 n.s 99.0 Highly correlated
149 LTR44 2 n.s 74.0 Weakly correlated
150 LTR2C 2 n.s 19.6 Weakly correlated
151 LTR77 2 * 94.0 Weakly correlated
152 MER4-int 2 n.s 74.0 Weakly correlated
153 MER92C 2 * 99.0 Highly correlated
154 MLT1E3 2 n.s 99.0 Highly correlated
155 MLT1F 2 n.s 99.0 Highly correlated
156 MLT2B2 2 n.s 99.0 Highly correlated
157 L1M4a2 2 n.s 99.0 Highly correlated
158 L1M8 2 n.s 99.0 Highly correlated
159 LTR31 2 n.s 74.0 Weakly correlated
160 LTR37A 2 n.s 99.0 Highly correlated
161 LTR41B 2 n.s 99.0 Highly correlated
162 LTR64 2 n.s 74.0 Weakly correlated
163 LTR85a 2 n.s 99.0 Highly correlated
164 MER4E 2 n.s 74.0 Weakly correlated
165 MLT1G3 2 n.s 99.0 Highly correlated
166 MamGypLTR2c 2 n.s 99.0 Highly correlated
167 HAL1ME 2 n.s 99.0 Highly correlated
168 HERVL-int 2 n.s 74.0 Weakly correlated
169 HUERS-P3-int 2 n.s 43.0 Weakly correlated
170 L1MA9 2 n.s 99.0 Highly correlated
171 L1MC3 2 n.s 99.0 Highly correlated
172 MER21C 2 n.s 99.0 Highly correlated
173 MER4D1 2 n.s 74.0 Weakly correlated
174 MER51C 2 n.s 43.0 Weakly correlated
175 MLT1M 2 n.s 99.0 Highly correlated
176 L1MC5a 2 n.s 99.0 Highly correlated
177 L1PA15-16 2 n.s 74.0 Weakly correlated
178 L1PA7 2 n.s 74.0 Weakly correlated
179 L1PB1 2 n.s 74.0 Weakly correlated
180 LTR10B 2 ** 28.9 Weakly correlated
181 LTR26 2 n.s 74.0 Weakly correlated
182 LTR33A_ 2 n.s 99.0 Highly correlated
183 LTR39 2 n.s 43.0 Weakly correlated
184 LTR71A 2 n.s 43.0 Weakly correlated
185 LTR78 2 n.s 99.0 Highly correlated
186 LTR82A 2 n.s 99.0 Highly correlated
187 MER34C2 2 n.s 74.0 Weakly correlated
188 MER61C 2 n.s 43.0 Weakly correlated
189 MER74C 2 n.s 99.0 Highly correlated
190 MER77B 2 n.s 99.0 Highly correlated
191 MLT1A0 2 n.s 99.0 Highly correlated
192 AluY 2 n.s 74.0 Weakly correlated
193 HERVP71A-int 2 n.s 43.0 Weakly correlated
194 L1MA4 2 n.s 87.0 Weakly correlated
195 L1MC1 2 n.s 99.0 Highly correlated
196 L1ME2 2 n.s 99.0 Highly correlated
197 L1ME4c 2 n.s 99.0 Highly correlated
198 L1P3 2 n.s 74.0 Weakly correlated
199 L2-1_AMi 2 n.s 319.0 Weakly correlated
200 LTR33 2 n.s 99.0 Highly correlated
201 MER70C 2 n.s 99.0 Highly correlated
202 CR1-3_Croc 2 n.s 319.0 Weakly correlated
203 HAL1b 2 n.s 99.0 Highly correlated
204 HERVIP10FH-int 2 n.s 28.9 Weakly correlated
205 L1M4 2 n.s 99.0 Highly correlated
206 L1MD2 2 n.s 99.0 Highly correlated
207 L1ME4a 2 n.s 99.0 Highly correlated
208 L1PBa 2 n.s 74.0 Weakly correlated
209 LTR14 2 * 28.9 Weakly correlated
210 LTR32 2 n.s 43.0 Weakly correlated
211 LTR9B 2 n.s 43.0 Weakly correlated
212 MER61D 2 n.s 43.0 Weakly correlated
213 MLT1G 2 n.s 99.0 Highly correlated
214 MLT2B4 2 n.s 99.0 Highly correlated
215 HERV17-int 2 n.s 28.9 Weakly correlated
216 HERVE-int 2 n.s 19.6 Weakly correlated
217 LTR47B3 2 * 74.0 Weakly correlated
218 MER110A 2 n.s 99.0 Highly correlated
219 MER4B-int 2 n.s 99.0 Highly correlated
220 MER61B 2 n.s 43.0 Weakly correlated
221 MER72B 2 n.s 43.0 Weakly correlated
222 MER83A-int 2 n.s 99.0 Highly correlated
223 FRAM 1 n.s 74.0 Weakly correlated
224 HERV9NC-int 1 n.s 19.6 Weakly correlated
225 L1MA5A 1 n.s 87.0 Weakly correlated
226 L1ME3C 1 n.s 99.0 Highly correlated
227 L1PA6 1 n.s 28.9 Weakly correlated
228 L4_B_Mam 1 n.s 99.0 Highly correlated
229 LOR1b 1 n.s 74.0 Weakly correlated
230 LTR16B1 1 n.s 99.0 Highly correlated
231 LTR65 1 n.s 99.0 Highly correlated
232 LTR80B 1 n.s 99.0 Highly correlated
233 LTR81A 1 n.s 99.0 Highly correlated
234 MER34B 1 n.s 87.0 Weakly correlated
235 MER70B 1 n.s 87.0 Weakly correlated
236 MER73 1 n.s 87.0 Weakly correlated
237 MLT2E 1 n.s 99.0 Highly correlated
238 AluSz 1 n.s 74.0 Weakly correlated
239 HUERS-P3b-int 1 n.s 43.0 Weakly correlated
240 L1M6B 1 n.s 99.0 Highly correlated
241 L1ME3B 1 n.s 99.0 Highly correlated
242 LTR43 1 n.s 74.0 Weakly correlated
243 LTR53B 1 n.s 99.0 Highly correlated
244 MER21-int 1 n.s 99.0 Highly correlated
245 MER51D 1 n.s 43.0 Weakly correlated
246 X6B_LINE 1 n.s 99.0 Highly correlated
247 AluSx 1 n.s 74.0 Weakly correlated
248 ERV3-16A3_LTR 1 n.s 99.0 Highly correlated
249 HERVL32-int 1 n.s 43.0 Weakly correlated
250 HUERS-P1-int 1 n.s 43.0 Weakly correlated
251 L1M6 1 n.s 99.0 Highly correlated
252 L1M7 1 n.s 99.0 Highly correlated
253 L1MA2 1 n.s 74.0 Weakly correlated
254 L1MA8 1 n.s 87.0 Weakly correlated
255 L1MDa 1 n.s 99.0 Highly correlated
256 L1ME3 1 n.s 99.0 Highly correlated
257 L1MEi 1 n.s 99.0 Highly correlated
258 LTR25-int 1 n.s 43.0 Weakly correlated
259 LTR28C 1 n.s 43.0 Weakly correlated
260 LTR3B 1 n.s 28.9 Weakly correlated
261 LTR49-int 1 n.s 74.0 Weakly correlated
262 LTR61 1 n.s 43.0 Weakly correlated
263 LTR75 1 n.s 99.0 Highly correlated
264 LTR85b 1 n.s 99.0 Highly correlated
265 LTR90A 1 n.s 99.0 Highly correlated
266 MER31A 1 n.s 87.0 Weakly correlated
267 MER4A1_ 1 n.s 74.0 Weakly correlated
268 MER57-int 1 n.s 87.0 Weakly correlated
269 MER57B2 1 n.s 43.0 Weakly correlated
270 MER74A 1 n.s 99.0 Highly correlated
271 MLT1A1 1 n.s 87.0 Weakly correlated
272 MLT1G1 1 n.s 99.0 Highly correlated
273 MLT1H1 1 n.s 99.0 Highly correlated
274 SVA_B 1 n.s 15.2 Weakly correlated
275 X6A_LINE 1 n.s 99.0 Highly correlated
276 AluSg 1 n.s 74.0 Weakly correlated
277 HERVH48-int 1 n.s 28.9 Weakly correlated
278 L1M4b 1 n.s 99.0 Highly correlated
279 L1P2 1 n.s 28.9 Weakly correlated
280 L1PA13 1 n.s 74.0 Weakly correlated
281 L1PB4 1 n.s 99.0 Highly correlated
282 L5 1 n.s 99.0 Highly correlated
283 LTR105_Mam 1 n.s 99.0 Highly correlated
284 LTR16A2 1 n.s 99.0 Highly correlated
285 LTR37-int 1 n.s 99.0 Highly correlated
286 LTR60B 1 n.s 74.0 Weakly correlated
287 LTR67B 1 n.s 99.0 Highly correlated
288 LTR9A1 1 n.s 43.0 Weakly correlated
289 MER31-int 1 n.s 99.0 Highly correlated
290 MER41-int 1 n.s 74.0 Weakly correlated
291 MER67C 1 n.s 99.0 Highly correlated
292 MER88 1 n.s 99.0 Highly correlated
293 MLT1J-int 1 n.s 99.0 Highly correlated
294 THE1D-int 1 n.s 28.9 Weakly correlated
295 FAM 1 n.s 87.0 Weakly correlated
296 FLAM_C 1 n.s 74.0 Weakly correlated
297 HERVFH21-int 1 n.s 28.9 Weakly correlated
298 L1MB5 1 n.s 99.0 Highly correlated
299 L1MCc 1 n.s 99.0 Highly correlated
300 L1ME3E 1 n.s 99.0 Highly correlated
301 L1MEb 1 n.s 99.0 Highly correlated
302 L1PREC2 1 n.s 43.0 Weakly correlated
303 LTR104_Mam 1 n.s 99.0 Highly correlated
304 LTR12C 1 n.s 19.6 Weakly correlated
305 MER11C 1 n.s 19.6 Weakly correlated
306 MER41G 1 n.s 74.0 Weakly correlated
307 MER92B 1 n.s 99.0 Highly correlated
308 MSTA 1 n.s 43.0 Weakly correlated
309 MSTB-int 1 n.s 43.0 Weakly correlated
310 MamRep1527 1 n.s 99.0 Highly correlated
311 HERV1_LTRd 1 ** 43.0 Weakly correlated
312 HERVK14-int 1 n.s 28.9 Weakly correlated
313 L1M4a1 1 n.s 99.0 Highly correlated
314 L1MA7 1 n.s 87.0 Weakly correlated
315 L1MD 1 n.s 99.0 Highly correlated
316 LFSINE_Vert 1 n.s 319.0 Weakly correlated
317 LOR1-int 1 n.s 74.0 Weakly correlated
318 LTR10E 1 n.s 28.9 Weakly correlated
319 LTR56 1 n.s 74.0 Weakly correlated
320 MER66-int 1 n.s 43.0 Weakly correlated
321 MLT1F2-int 1 n.s 99.0 Highly correlated
322 THE1C-int 1 n.s 43.0 Weakly correlated
323 L1M1 1 n.s 74.0 Weakly correlated
324 L1MB1 1 n.s 99.0 Highly correlated
325 L1MC 1 n.s 99.0 Highly correlated
326 L1MEj 1 n.s 99.0 Highly correlated
327 L1P4d 1 n.s 74.0 Weakly correlated
328 LTR14C 1 n.s 28.9 Weakly correlated
329 LTR41C 1 n.s 99.0 Highly correlated
330 MER101-int 1 n.s 74.0 Weakly correlated
331 MER110-int 1 n.s 99.0 Highly correlated
332 MER41D 1 n.s 74.0 Weakly correlated
333 MER57C2 1 n.s 87.0 Weakly correlated
334 MER65A 1 n.s 74.0 Weakly correlated
335 MLT1A-int 1 n.s 99.0 Highly correlated
336 MLT1D-int 1 n.s 99.0 Highly correlated
337 MSTB 1 n.s 43.0 Weakly correlated
338 MSTD 1 n.s 74.0 Weakly correlated
339 MamSINE1 1 n.s 99.0 Highly correlated
340 AluSx1 1 n.s 74.0 Weakly correlated
341 AmnSINE1 1 n.s 319.0 Weakly correlated
342 L1M3 1 n.s 99.0 Highly correlated
343 LTR12E 1 n.s 19.6 Weakly correlated
344 LTR33C 1 n.s 99.0 Highly correlated
345 LTR82B 1 n.s 99.0 Highly correlated
346 MER48 1 n.s 28.9 Weakly correlated
347 MER50-int 1 n.s 43.0 Weakly correlated
348 MER51E 1 n.s 43.0 Weakly correlated
349 MER65C 1 n.s 74.0 Weakly correlated
350 MER83C 1 n.s 43.0 Weakly correlated
351 MER87B 1 n.s 74.0 Weakly correlated
352 MER92A 1 n.s 99.0 Highly correlated
353 MLT1E 1 n.s 99.0 Highly correlated
354 MamGypsy2-I 1 n.s 99.0 Highly correlated
355 PABL_A 1 n.s 43.0 Weakly correlated
356 X1_LINE 1 * 319.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 ERVL-E-INT 99.0 Highly correlated
2 HAL1 99.0 Highly correlated
3 HERV1_LTRA 28.9 Weakly correlated
4 HERVH-INT 28.9 Weakly correlated
5 L1MB7 99.0 Highly correlated
6 L1MC4 99.0 Highly correlated
7 L1MEF 99.0 Highly correlated
8 L2 99.0 Highly correlated
9 L2A 99.0 Highly correlated
10 L2C 99.0 Highly correlated
11 L3 99.0 Highly correlated
12 L3B 99.0 Highly correlated
13 LTR13A 28.9 Weakly correlated
14 LTR15 28.9 Weakly correlated
15 LTR19B 43.0 Weakly correlated
16 LTR19C 43.0 Weakly correlated
17 LTR2 28.9 Weakly correlated
18 LTR21A 28.9 Weakly correlated
19 LTR24 74.0 Weakly correlated
20 LTR4 28.9 Weakly correlated
21 LTR45C 99.0 Highly correlated
22 LTR53 99.0 Highly correlated
23 LTR54 74.0 Weakly correlated
24 LTR55 99.0 Highly correlated
25 LTR5B 28.9 Weakly correlated
26 LTR5_HS 0.0 Weakly correlated
27 LTR62 74.0 Weakly correlated
28 LTR6A 28.9 Weakly correlated
29 LTR6B 19.6 Weakly correlated
30 LTR71B 43.0 Weakly correlated
31 LTR73 99.0 Highly correlated
32 LTR75_1 99.0 Highly correlated
33 LTR76 74.0 Weakly correlated
34 LTR8 43.0 Weakly correlated
35 LTR9 43.0 Weakly correlated
36 MER11A 28.9 Weakly correlated
37 MER41A 74.0 Weakly correlated
38 MER41B 74.0 Weakly correlated
39 MER41E 74.0 Weakly correlated
40 MER4C 74.0 Weakly correlated
41 MER54B 87.0 Weakly correlated
42 MER61F 43.0 Weakly correlated
43 MER72 43.0 Weakly correlated
44 MER74B 99.0 Highly correlated
45 MIR1_AMN 319.0 Weakly correlated
46 MIR3 99.0 Highly correlated
47 MIRB 99.0 Highly correlated
48 MIRC 99.0 Highly correlated
49 MLT1B 99.0 Highly correlated
50 MLT1C 94.0 Weakly correlated
51 MLT1J 99.0 Highly correlated
52 MLT1L 99.0 Highly correlated