ZRdb KZFP & Repeats
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Human_ZNF175

  • Protein
    Zinc finger protein 175
  • Length
    711
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    94.0 Mya
  • Time of Changing in binding specificity
    94.0 Mya
  • Uniprot_ID
    Q9Y473
  • NCBI_ID
    7728
Sequence:
MPADVNLSQKPQVLGPEKQDGSCEASVSFEDVTVDFSREEWQQLDPAQRCLYRDVMLELYSHLFAVGYHIPNPEVIFRMLKEKEPRVEEAEVSHQRCQEREFGLEIPQKEISKKASFQKDMVGEFTRDGSWCSILEELRLDADRTKKDEQNQIQPMSHSAFFNKKTLNTESNCEYKDPGKMIRTRPHLASSQKQPQKCCLFTESLKLNLEVNGQNESNDTEQLDDVVGSGQLFSHSSSDACSKNIHTGETFCKGNQCRKVCGHKQSLKQHQIHTQKKPDGCSECGGSFTQKSHLFAQQRIHSVGNLHECGKCGKAFMPQLKLSVYLTDHTGDIPCICKECGKVFIQRSELLTHQKTHTRKKPYKCHDCGKAFFQMLSLFRHQRTHSREKLYECSECGKGFSQNSTLIIHQKIHTGERQYACSECGKAFTQKSTLSLHQRIHSGQKSYVCIECGQAFIQKAHLIVHQRSHTGEKPYQCHNCGKSFISKSQLDIHHRIHTGEKPYECSDCGKTFTQKSHLNIHQKIHTGERHHVCSECGKAFNQKSILSMHQRIHTGEKPYKCSECGKAFTSKSQFKEHQRIHTGEKPYVCTECGKAFNGRSNFHKHQITHTRERPFVCYKCGKAFVQKSELITHQRTHMGEKPYECLDCGKSFSKKPQLKVHQRIHTGERPYVCSECGKAFNNRSNFNKHQTTHTRDKSYKCSYSVKGFTKQ
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 27..98
2 C2h2 279..301
3 C2h2 307..329
4 C2h2 335..357
5 C2h2 363..385
6 C2h2 391..413
7 C2h2 419..441
8 C2h2 447..469
9 C2h2 475..497
10 C2h2 503..525
11 C2h2 531..553
12 C2h2 559..581
13 C2h2 587..609
14 C2h2 615..637
15 C2h2 643..665
16 C2h2 671..693
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component cytosol
2 Cellular Component nucleolus
3 Cellular Component nucleus
4 Molecular Function DNA-binding transcription activator activity, RNA polymerase II-specific
5 Molecular Function DNA-binding transcription factor activity
6 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
7 Molecular Function DNA-binding transcription repressor activity, RNA polymerase II-specific
8 Molecular Function metal ion binding
9 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
10 Molecular Function RNA polymerase II transcription regulatory region sequence-specific DNA binding
11 Biological Process defense response to virus
12 Biological Process negative regulation of transcription by RNA polymerase II
13 Biological Process positive regulation of transcription by RNA polymerase II
14 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 MIRb 1305 **** 99.0 Moderately correlated
2 L2a 1043 **** 99.0 Moderately correlated
3 L2c 838 **** 99.0 Moderately correlated
4 MIR 838 **** 99.0 Moderately correlated
5 MER41B 812 **** 74.0 Weakly correlated
6 MIR3 677 **** 99.0 Moderately correlated
7 MIRc 668 **** 99.0 Moderately correlated
8 L2b 643 **** 99.0 Moderately correlated
9 AluJb 515 n.s 74.0 Weakly correlated
10 L2 466 **** 99.0 Moderately correlated
11 MER41A 455 **** 74.0 Weakly correlated
12 AluSx1 419 n.s 74.0 Weakly correlated
13 AluSx 360 n.s 74.0 Weakly correlated
14 AluJo 320 n.s 74.0 Weakly correlated
15 AluJr 311 n.s 74.0 Weakly correlated
16 LTR8 295 **** 43.0 Weakly correlated
17 AluSz 290 n.s 74.0 Weakly correlated
18 L3 289 **** 99.0 Moderately correlated
19 MLT1J 214 **** 99.0 Moderately correlated
20 MLT1C 202 **** 94.0 Highly correlated
21 AluY 194 n.s 74.0 Weakly correlated
22 MLT1K 192 **** 99.0 Moderately correlated
23 L1MB7 157 n.s 99.0 Moderately correlated
24 AluSq2 148 n.s 74.0 Weakly correlated
25 MLT1B 146 **** 99.0 Moderately correlated
26 MLT1L 144 **** 99.0 Moderately correlated
27 AluSz6 136 n.s 74.0 Weakly correlated
28 L1M4 135 n.s 99.0 Moderately correlated
29 MIR1_Amn 133 **** 319.0 Weakly correlated
30 LTR54 130 **** 74.0 Weakly correlated
31 FLAM_C 121 **** 74.0 Weakly correlated
32 MLT1H 118 **** 99.0 Moderately correlated
33 AluSg 117 n.s 74.0 Weakly correlated
34 L1MC4 114 n.s 99.0 Moderately correlated
35 AluSc 105 n.s 74.0 Weakly correlated
36 MLT1I 105 **** 99.0 Moderately correlated
37 AluSp 104 n.s 74.0 Weakly correlated
38 L1M5 103 n.s 99.0 Moderately correlated
39 HAL1 98 n.s 99.0 Moderately correlated
40 L1MB4 96 **** 99.0 Moderately correlated
41 LTR62 95 **** 74.0 Weakly correlated
42 MLT1D 93 n.s 99.0 Moderately correlated
43 AluSx3 92 n.s 74.0 Weakly correlated
44 L1MC5a 89 n.s 99.0 Moderately correlated
45 L1ME1 86 n.s 99.0 Moderately correlated
46 L3b 86 **** 99.0 Moderately correlated
47 LTR8B 84 **** 43.0 Weakly correlated
48 LTR33 80 **** 99.0 Moderately correlated
49 AluSq 76 n.s 74.0 Weakly correlated
50 L1ME4a 76 n.s 99.0 Moderately correlated
51 L1MEd 75 n.s 99.0 Moderately correlated
52 LTR54B 75 **** 74.0 Weakly correlated
53 L1MB3 74 n.s 99.0 Moderately correlated
54 LTR18B 74 **** 43.0 Weakly correlated
55 MSTA 73 n.s 43.0 Weakly correlated
56 MamRTE1 73 **** 99.0 Moderately correlated
57 MLT1A0 72 n.s 99.0 Moderately correlated
58 MLT1F 71 **** 99.0 Moderately correlated
59 MLT1F2 71 **** 99.0 Moderately correlated
60 L1ME3G 69 n.s 99.0 Moderately correlated
61 L1MB5 66 n.s 99.0 Moderately correlated
62 MLT1H2 66 **** 99.0 Moderately correlated
63 MLT1J2 65 **** 99.0 Moderately correlated
64 LTR5_Hs 62 **** 0.0 Weakly correlated
65 MER41-int 62 **** 74.0 Weakly correlated
66 AluJr4 61 n.s 74.0 Weakly correlated
67 L1MB8 60 n.s 99.0 Moderately correlated
68 MER48 60 **** 28.9 Weakly correlated
69 MER61E 60 **** 43.0 Weakly correlated
70 MLT1J1 59 **** 99.0 Moderately correlated
71 L1ME4b 58 n.s 99.0 Moderately correlated
72 LTR9 58 **** 43.0 Weakly correlated
73 ERVL-E-int 57 n.s 99.0 Moderately correlated
74 MLT1A 56 * 99.0 Moderately correlated
75 L1MC5 55 n.s 99.0 Moderately correlated
76 L1MEg 55 n.s 99.0 Moderately correlated
77 MER65A 53 **** 74.0 Weakly correlated
78 MLT1F1 53 **** 99.0 Moderately correlated
79 FRAM 52 **** 74.0 Weakly correlated
80 L1MC3 52 n.s 99.0 Moderately correlated
81 LTR47A 52 **** 74.0 Weakly correlated
82 LTR8A 51 **** 43.0 Weakly correlated
83 ERV3-16A3_I-int 50 n.s 99.0 Moderately correlated
84 L1MEc 50 n.s 99.0 Moderately correlated
85 MER41C 50 **** 74.0 Weakly correlated
86 MLT1O 50 **** 99.0 Moderately correlated
87 AluSc8 48 n.s 74.0 Weakly correlated
88 L1MD2 48 n.s 99.0 Moderately correlated
89 MLT1N2 48 **** 99.0 Moderately correlated
90 AmnSINE1 45 **** 319.0 Weakly correlated
91 MER41E 45 **** 74.0 Weakly correlated
92 L1MC4a 44 n.s 99.0 Moderately correlated
93 LTR50 44 **** 99.0 Moderately correlated
94 LTR10A 43 **** 28.9 Weakly correlated
95 MSTD 43 n.s 74.0 Weakly correlated
96 MER50 42 **** 43.0 Weakly correlated
97 FLAM_A 41 * 74.0 Weakly correlated
98 LTR15 41 **** 28.9 Weakly correlated
99 L1ME3A 40 n.s 99.0 Moderately correlated
100 LTR13 40 **** 19.6 Weakly correlated
101 L1MB2 39 n.s 99.0 Moderately correlated
102 MER72 39 **** 43.0 Weakly correlated
103 L4_A_Mam 38 * 99.0 Moderately correlated
104 MER21C 38 n.s 99.0 Moderately correlated
105 ERVL-B4-int 37 n.s 99.0 Moderately correlated
106 L1ME3Cz 37 n.s 99.0 Moderately correlated
107 LTR16C 37 n.s 99.0 Moderately correlated
108 LTR17 36 **** 28.9 Weakly correlated
109 MER49 36 **** 43.0 Weakly correlated
110 L1MA9 35 n.s 99.0 Moderately correlated
111 L1ME4c 35 n.s 99.0 Moderately correlated
112 LTR53 35 **** 99.0 Moderately correlated
113 MER4-int 35 n.s 74.0 Weakly correlated
114 THE1B 35 n.s 43.0 Weakly correlated
115 MER21A 34 **** 74.0 Weakly correlated
116 L1PB1 33 n.s 74.0 Weakly correlated
117 LTR7C 33 **** 28.9 Weakly correlated
118 MER21B 33 ** 99.0 Moderately correlated
119 MER65D 33 **** 87.0 Weakly correlated
120 MamSINE1 33 **** 99.0 Moderately correlated
121 LTR19B 32 **** 43.0 Weakly correlated
122 LTR46 32 **** 43.0 Weakly correlated
123 LTR73 32 **** 99.0 Moderately correlated
124 MER89 32 **** 99.0 Moderately correlated
125 MLT1M 32 **** 99.0 Moderately correlated
126 HAL1b 31 n.s 99.0 Moderately correlated
127 LTR5B 31 **** 28.9 Weakly correlated
128 THE1D 31 n.s 43.0 Weakly correlated
129 AluSg4 30 n.s 74.0 Weakly correlated
130 L1MC1 30 n.s 99.0 Moderately correlated
131 L1ME2 30 n.s 99.0 Moderately correlated
132 LTR2 30 **** 28.9 Weakly correlated
133 MER54B 30 **** 87.0 Weakly correlated
134 MLT1G3 30 *** 99.0 Moderately correlated
135 MLT1H1 30 ** 99.0 Moderately correlated
136 L1MD3 29 n.s 99.0 Moderately correlated
137 LTR19C 29 **** 43.0 Weakly correlated
138 LTR67B 29 **** 99.0 Moderately correlated
139 LTR6B 29 **** 19.6 Weakly correlated
140 MLT1E2 29 n.s 99.0 Moderately correlated
141 L1PA7 28 n.s 74.0 Weakly correlated
142 MLT2F 28 **** 99.0 Moderately correlated
143 L1ME2z 27 n.s 99.0 Moderately correlated
144 L1PA2 27 n.s 15.2 Weakly correlated
145 LFSINE_Vert 27 **** 319.0 Weakly correlated
146 LTR45C 27 **** 99.0 Moderately correlated
147 LTR6A 27 **** 28.9 Weakly correlated
148 MER77B 27 **** 99.0 Moderately correlated
149 MLT1G 27 ** 99.0 Moderately correlated
150 Plat_L3 27 **** 99.0 Moderately correlated
151 HERVH48-int 26 **** 28.9 Weakly correlated
152 MLT2D 26 * 99.0 Moderately correlated
153 L1MEf 25 n.s 99.0 Moderately correlated
154 LTR4 25 **** 28.9 Weakly correlated
155 MER51A 25 **** 43.0 Weakly correlated
156 MER57A-int 25 * 43.0 Weakly correlated
157 MLT2B4 25 n.s 99.0 Moderately correlated
158 AluSx4 24 n.s 74.0 Weakly correlated
159 L4_C_Mam 24 n.s 99.0 Moderately correlated
160 LTR13A 24 **** 28.9 Weakly correlated
161 MER39 24 n.s 74.0 Weakly correlated
162 MSTB 24 n.s 43.0 Weakly correlated
163 THE1A 24 n.s 43.0 Weakly correlated
164 THE1C 24 n.s 43.0 Weakly correlated
165 L1M4b 23 n.s 99.0 Moderately correlated
166 AluSc5 22 n.s 74.0 Weakly correlated
167 L1M1 22 n.s 74.0 Weakly correlated
168 L1PA5 22 n.s 19.6 Weakly correlated
169 LTR16 22 * 99.0 Moderately correlated
170 LTR41B 22 **** 99.0 Moderately correlated
171 LTR49-int 22 n.s 74.0 Weakly correlated
172 LTR78 22 n.s 99.0 Moderately correlated
173 MER54A 22 **** 87.0 Weakly correlated
174 AluYj4 21 ** 0.0 Weakly correlated
175 HAL1ME 21 n.s 99.0 Moderately correlated
176 HERVIP10FH-int 21 **** 28.9 Weakly correlated
177 L1MA4 21 n.s 87.0 Weakly correlated
178 L1MA8 21 n.s 87.0 Weakly correlated
179 L1PA13 21 n.s 74.0 Weakly correlated
180 LTR21A 21 **** 28.9 Weakly correlated
181 LTR25 21 **** 43.0 Weakly correlated
182 LTR76 21 **** 74.0 Weakly correlated
183 MER41D 21 **** 74.0 Weakly correlated
184 L1MCc 20 n.s 99.0 Moderately correlated
185 L1ME3B 20 n.s 99.0 Moderately correlated
186 LTR104_Mam 20 **** 99.0 Moderately correlated
187 LTR33A 20 *** 99.0 Moderately correlated
188 LTR37A 20 **** 99.0 Moderately correlated
189 LTR9D 20 **** 43.0 Weakly correlated
190 MamRep605 20 * 99.0 Moderately correlated
191 Alu 19 **** 74.0 Weakly correlated
192 HERVH-int 19 n.s 28.9 Weakly correlated
193 L1MA3 19 n.s 74.0 Weakly correlated
194 L1MDa 19 n.s 99.0 Moderately correlated
195 L1ME3 19 n.s 99.0 Moderately correlated
196 LTR18A 19 **** 43.0 Weakly correlated
197 MLT1E1A 19 n.s 99.0 Moderately correlated
198 LTR16A 18 n.s 99.0 Moderately correlated
199 LTR16E1 18 * 99.0 Moderately correlated
200 MER66C 18 **** 43.0 Weakly correlated
201 MER83 18 **** 43.0 Weakly correlated
202 MLT1G1 18 n.s 99.0 Moderately correlated
203 PRIMA4-int 18 **** 74.0 Weakly correlated
204 L1MEi 17 n.s 99.0 Moderately correlated
205 L1PREC2 17 n.s 43.0 Weakly correlated
206 LTR3 17 **** 28.9 Weakly correlated
207 LTR52 17 **** 99.0 Moderately correlated
208 LTR55 17 **** 99.0 Moderately correlated
209 MER4B 17 n.s 74.0 Weakly correlated
210 MER57B1 17 **** 43.0 Weakly correlated
211 CR1-3_Croc 16 **** 319.0 Weakly correlated
212 HERVK-int 16 * 28.9 Weakly correlated
213 HUERS-P1-int 16 ** 43.0 Weakly correlated
214 L1M6 16 n.s 99.0 Moderately correlated
215 L1P2 16 n.s 28.9 Weakly correlated
216 L1PA6 16 n.s 28.9 Weakly correlated
217 LTR16A1 16 n.s 99.0 Moderately correlated
218 LTR41 16 *** 99.0 Moderately correlated
219 LTR41C 16 **** 99.0 Moderately correlated
220 LTR78B 16 n.s 99.0 Moderately correlated
221 MER34 16 *** 87.0 Weakly correlated
222 MER34A 16 *** 99.0 Moderately correlated
223 MER4C 16 **** 74.0 Weakly correlated
224 MER57-int 16 n.s 87.0 Weakly correlated
225 MER65B 16 **** 74.0 Weakly correlated
226 MER87 16 **** 43.0 Weakly correlated
227 L1MD 15 n.s 99.0 Moderately correlated
228 L1ME3E 15 n.s 99.0 Moderately correlated
229 L2-3_Crp 15 ** 431.0 Weakly correlated
230 LTR26 15 **** 74.0 Weakly correlated
231 LTR39 15 * 43.0 Weakly correlated
232 LTR71B 15 **** 43.0 Weakly correlated
233 LTR79 15 n.s 99.0 Moderately correlated
234 MER57B2 15 *** 43.0 Weakly correlated
235 MER61F 15 **** 43.0 Weakly correlated
236 MER74A 15 n.s 99.0 Moderately correlated
237 MLT2B1 15 n.s 99.0 Moderately correlated
238 HERV1_LTRc 14 **** 28.9 Weakly correlated
239 HUERS-P3-int 14 n.s 43.0 Weakly correlated
240 L1M4c 14 n.s 99.0 Moderately correlated
241 L1MA4A 14 n.s 87.0 Weakly correlated
242 L1MB1 14 n.s 99.0 Moderately correlated
243 L1MC 14 n.s 99.0 Moderately correlated
244 L1MC2 14 n.s 99.0 Moderately correlated
245 L1PA16 14 n.s 74.0 Weakly correlated
246 L1PBa 14 n.s 74.0 Weakly correlated
247 L4_B_Mam 14 n.s 99.0 Moderately correlated
248 LTR10F 14 **** 28.9 Weakly correlated
249 LTR16A2 14 * 99.0 Moderately correlated
250 LTR23 14 **** 74.0 Weakly correlated
251 LTR75_1 14 **** 99.0 Moderately correlated
252 LTR85b 14 **** 99.0 Moderately correlated
253 MER77 14 * 99.0 Moderately correlated
254 MLT1A1 14 n.s 87.0 Weakly correlated
255 MLT2B2 14 n.s 99.0 Moderately correlated
256 PRIMA41-int 14 ** 74.0 Weakly correlated
257 AluSg7 13 n.s 74.0 Weakly correlated
258 HERVE-int 13 n.s 19.6 Weakly correlated
259 HERVS71-int 13 * 28.9 Weakly correlated
260 L1M7 13 n.s 99.0 Moderately correlated
261 L1ME3F 13 n.s 99.0 Moderately correlated
262 L1ME5 13 n.s 99.0 Moderately correlated
263 L1PA3 13 n.s 19.6 Weakly correlated
264 L1PB4 13 n.s 99.0 Moderately correlated
265 LTR18C 13 **** 43.0 Weakly correlated
266 LTR19A 13 **** 43.0 Weakly correlated
267 LTR36 13 **** 74.0 Weakly correlated
268 LTR56 13 *** 74.0 Weakly correlated
269 LTR7 13 n.s 19.6 Weakly correlated
270 MER4A1 13 n.s 74.0 Weakly correlated
271 MLT2B3 13 n.s 99.0 Moderately correlated
272 HERV17-int 12 n.s 28.9 Weakly correlated
273 HERVK22-int 12 n.s 43.0 Weakly correlated
274 HERVL-int 12 n.s 74.0 Weakly correlated
275 L1M2 12 n.s 99.0 Moderately correlated
276 L1MCa 12 n.s 99.0 Moderately correlated
277 L1ME3D 12 n.s 99.0 Moderately correlated
278 L1MEh 12 n.s 99.0 Moderately correlated
279 L1P3 12 n.s 74.0 Weakly correlated
280 LTR12C 12 n.s 19.6 Weakly correlated
281 LTR16B2 12 n.s 99.0 Moderately correlated
282 LTR24 12 **** 74.0 Weakly correlated
283 LTR33A_ 12 n.s 99.0 Moderately correlated
284 LTR40a 12 n.s 99.0 Moderately correlated
285 LTR71A 12 **** 43.0 Weakly correlated
286 LTR81A 12 **** 99.0 Moderately correlated
287 LTR81B 12 *** 99.0 Moderately correlated
288 MER31-int 12 n.s 99.0 Moderately correlated
289 MER39B 12 n.s 74.0 Weakly correlated
290 MER4A 12 ** 74.0 Weakly correlated
291 MER4D1 12 n.s 74.0 Weakly correlated
292 MER66B 12 * 43.0 Weakly correlated
293 MLT2C1 12 n.s 99.0 Moderately correlated
294 MSTB1 12 n.s 74.0 Weakly correlated
295 AluYc 11 n.s 74.0 Weakly correlated
296 AmnSINE2 11 **** 319.0 Weakly correlated
297 HUERS-P3b-int 11 n.s 43.0 Weakly correlated
298 L1M4a1 11 n.s 99.0 Moderately correlated
299 L1MA10 11 n.s 99.0 Moderately correlated
300 LTR33B 11 * 99.0 Moderately correlated
301 LTR33C 11 ** 99.0 Moderately correlated
302 LTR47B2 11 **** 74.0 Weakly correlated
303 LTR65 11 **** 99.0 Moderately correlated
304 LTR82A 11 * 99.0 Moderately correlated
305 LTR85a 11 * 99.0 Moderately correlated
306 LTR9B 11 ** 43.0 Weakly correlated
307 MER41G 11 **** 74.0 Weakly correlated
308 MER4B-int 11 n.s 99.0 Moderately correlated
309 MER65-int 11 n.s 87.0 Weakly correlated
310 MER74B 11 * 99.0 Moderately correlated
311 MER90a 11 n.s 99.0 Moderately correlated
312 MamGypLTR3a 11 ** 99.0 Moderately correlated
313 ERVL-int 10 n.s 99.0 Moderately correlated
314 FAM 10 n.s 87.0 Weakly correlated
315 HERV1_LTRa 10 **** 28.9 Weakly correlated
316 HERV1_LTRe 10 **** 43.0 Weakly correlated
317 HERVP71A-int 10 ** 43.0 Weakly correlated
318 L1MEb 10 n.s 99.0 Moderately correlated
319 L1PA10 10 n.s 74.0 Weakly correlated
320 L1PA11 10 n.s 74.0 Weakly correlated
321 L1PA4 10 n.s 19.6 Weakly correlated
322 L1PA8 10 n.s 74.0 Weakly correlated
323 L2-1_AMi 10 *** 319.0 Weakly correlated
324 LTR12F 10 ** 28.9 Weakly correlated
325 LTR31 10 **** 74.0 Weakly correlated
326 LTR44 10 **** 74.0 Weakly correlated
327 LTR64 10 **** 74.0 Weakly correlated
328 MER34C2 10 *** 74.0 Weakly correlated
329 MER67C 10 n.s 99.0 Moderately correlated
330 MER73 10 **** 87.0 Weakly correlated
331 MLT1E3 10 n.s 99.0 Moderately correlated
332 HERV15-int 9 ** 28.9 Weakly correlated
333 L1M3 9 n.s 99.0 Moderately correlated
334 L1MD1 9 n.s 99.0 Moderately correlated
335 L1P1 9 n.s 19.6 Weakly correlated
336 L1P4 9 n.s 74.0 Weakly correlated
337 L1PA15 9 n.s 74.0 Weakly correlated
338 LTR16D 9 * 99.0 Moderately correlated
339 LTR16E2 9 n.s 99.0 Moderately correlated
340 LTR1A2 9 n.s 43.0 Weakly correlated
341 LTR48B 9 n.s 74.0 Weakly correlated
342 MER31B 9 n.s 99.0 Moderately correlated
343 MER4CL34 9 n.s 43.0 Weakly correlated
344 MER68 9 n.s 99.0 Moderately correlated
345 MER90 9 ** 99.0 Moderately correlated
346 MamGypsy2-I 9 n.s 99.0 Moderately correlated
347 Penelope1_Vert 9 **** 319.0 Weakly correlated
348 AluYh3 8 n.s 15.2 Weakly correlated
349 AluYm1 8 n.s 19.6 Weakly correlated
350 HERV9NC-int 8 n.s 19.6 Weakly correlated
351 HERVK14-int 8 n.s 28.9 Weakly correlated
352 L1M8 8 n.s 99.0 Moderately correlated
353 L1PA17 8 n.s 74.0 Weakly correlated
354 L1PBa1 8 n.s 74.0 Weakly correlated
355 LTR10D 8 **** 28.9 Weakly correlated
356 LTR2C 8 **** 19.6 Weakly correlated
357 LTR47A2 8 **** 74.0 Weakly correlated
358 LTR75 8 **** 99.0 Moderately correlated
359 LTR77 8 **** 94.0 Highly correlated
360 MER34B 8 * 87.0 Weakly correlated
361 MER51D 8 **** 43.0 Weakly correlated
362 MER57C2 8 *** 87.0 Weakly correlated
363 MER57E1 8 *** 87.0 Weakly correlated
364 MER61-int 8 n.s 43.0 Weakly correlated
365 MER66D 8 **** 43.0 Weakly correlated
366 MLT1J-int 8 n.s 99.0 Moderately correlated
367 MamGypLTR2c 8 ** 99.0 Moderately correlated
368 AluSq10 7 n.s 74.0 Weakly correlated
369 AluSq4 7 n.s 74.0 Weakly correlated
370 HERV3-int 7 n.s 28.9 Weakly correlated
371 HERV9-int 7 n.s 28.9 Weakly correlated
372 HERVL18-int 7 n.s 43.0 Weakly correlated
373 HERVL40-int 7 n.s 99.0 Moderately correlated
374 L1M3f 7 n.s 87.0 Weakly correlated
375 L1MA7 7 n.s 87.0 Weakly correlated
376 L1ME3C 7 n.s 99.0 Moderately correlated
377 L1PA12 7 n.s 74.0 Weakly correlated
378 LTR10C 7 n.s 28.9 Weakly correlated
379 LTR29 7 * 43.0 Weakly correlated
380 LTR2B 7 ** 19.6 Weakly correlated
381 LTR32 7 n.s 43.0 Weakly correlated
382 LTR35A 7 **** 43.0 Weakly correlated
383 LTR51 7 * 74.0 Weakly correlated
384 LTR91 7 **** 99.0 Moderately correlated
385 MER50-int 7 n.s 43.0 Weakly correlated
386 MER65C 7 * 74.0 Weakly correlated
387 MER67A 7 ** 99.0 Moderately correlated
388 MER67B 7 * 99.0 Moderately correlated
389 MER68B 7 ** 99.0 Moderately correlated
390 MER92B 7 n.s 99.0 Moderately correlated
391 MLT1I-int 7 n.s 99.0 Moderately correlated
392 MamGypLTR1a 7 * 99.0 Moderately correlated
393 MamRep1527 7 n.s 99.0 Moderately correlated
394 SVA_A 7 n.s 19.6 Weakly correlated
395 SVA_B 7 n.s 15.2 Weakly correlated
396 THE1C-int 7 n.s 43.0 Weakly correlated
397 X6A_LINE 7 ** 99.0 Moderately correlated
398 ERV24B_Prim-int 6 n.s 74.0 Weakly correlated
399 ERV3-16A3_LTR 6 n.s 99.0 Moderately correlated
400 HERV16-int 6 n.s 99.0 Moderately correlated
401 HERVL74-int 6 * 99.0 Moderately correlated
402 L1MA2 6 n.s 74.0 Weakly correlated
403 L1MA5A 6 n.s 87.0 Weakly correlated
404 L1MA6 6 n.s 87.0 Weakly correlated
405 L1PB2 6 n.s 74.0 Weakly correlated
406 LTR101_Mam 6 n.s 99.0 Moderately correlated
407 LTR26E 6 **** 74.0 Weakly correlated
408 LTR40b 6 n.s 99.0 Moderately correlated
409 LTR45B 6 * 74.0 Weakly correlated
410 LTR53-int 6 n.s 99.0 Moderately correlated
411 LTR85c 6 n.s 99.0 Moderately correlated
412 LTR87 6 n.s 99.0 Moderately correlated
413 MER11D 6 n.s 19.6 Weakly correlated
414 MER34-int 6 * 99.0 Moderately correlated
415 MER51E 6 *** 43.0 Weakly correlated
416 MER57F 6 ** 74.0 Weakly correlated
417 MER66A 6 ** 43.0 Weakly correlated
418 MER70C 6 ** 99.0 Moderately correlated
419 MER74C 6 *** 99.0 Moderately correlated
420 MER92C 6 **** 99.0 Moderately correlated
421 MLT2A1 6 n.s 74.0 Weakly correlated
422 MLT2E 6 ** 99.0 Moderately correlated
423 PABL_A-int 6 n.s 74.0 Weakly correlated
424 SVA_D 6 n.s 15.2 Weakly correlated
425 CR1_Mam 5 n.s 99.0 Moderately correlated
426 HAL1M8 5 n.s 99.0 Moderately correlated
427 HERVK3-int 5 n.s 28.9 Weakly correlated
428 HERVL66-int 5 * 43.0 Weakly correlated
429 L1M4a2 5 n.s 99.0 Moderately correlated
430 L1MA5 5 n.s 87.0 Weakly correlated
431 L1PB3 5 n.s 74.0 Weakly correlated
432 LTR102_Mam 5 n.s 99.0 Moderately correlated
433 LTR10B 5 **** 28.9 Weakly correlated
434 LTR10B2 5 **** 28.9 Weakly correlated
435 LTR10E 5 * 28.9 Weakly correlated
436 LTR16B 5 n.s 99.0 Moderately correlated
437 LTR34 5 ** 74.0 Weakly correlated
438 LTR37B 5 n.s 99.0 Moderately correlated
439 LTR40c 5 n.s 99.0 Moderately correlated
440 LTR43 5 n.s 74.0 Weakly correlated
441 LTR47B4 5 **** 74.0 Weakly correlated
442 LTR48 5 n.s 74.0 Weakly correlated
443 LTR83 5 n.s 99.0 Moderately correlated
444 LTR88a 5 * 99.0 Moderately correlated
445 LTR88c 5 * 99.0 Moderately correlated
446 MER110A 5 n.s 99.0 Moderately correlated
447 MER31A 5 n.s 87.0 Weakly correlated
448 MER34A1 5 n.s 99.0 Moderately correlated
449 MER34B-int 5 n.s 99.0 Moderately correlated
450 MER34C_ 5 n.s 87.0 Weakly correlated
451 MER4E 5 n.s 74.0 Weakly correlated
452 MER51B 5 n.s 43.0 Weakly correlated
453 MER61A 5 n.s 43.0 Weakly correlated
454 MER61B 5 * 43.0 Weakly correlated
455 MER61D 5 ** 43.0 Weakly correlated
456 MER76 5 n.s 99.0 Moderately correlated
457 MER84 5 ** 43.0 Weakly correlated
458 MER92A 5 *** 99.0 Moderately correlated
459 MLT1C-int 5 n.s 94.0 Highly correlated
460 MLT1D-int 5 n.s 99.0 Moderately correlated
461 MSTA1 5 n.s 74.0 Weakly correlated
462 PABL_A 5 n.s 43.0 Weakly correlated
463 X7B_LINE 5 * 319.0 Weakly correlated
464 X7C_LINE 5 ** 319.0 Weakly correlated
465 ERV24_Prim-int 4 n.s 74.0 Weakly correlated
466 ERVL47-int 4 n.s 74.0 Weakly correlated
467 HERV1_I-int 4 * 43.0 Weakly correlated
468 HERV1_LTRd 4 **** 43.0 Weakly correlated
469 HERVFH19-int 4 n.s 43.0 Weakly correlated
470 HERVIP10F-int 4 n.s 28.9 Weakly correlated
471 HERVK13-int 4 * 19.6 Weakly correlated
472 L1HS 4 n.s 8.6 Weakly correlated
473 L1M3c 4 n.s 99.0 Moderately correlated
474 L1MEg2 4 n.s 99.0 Moderately correlated
475 L1MEj 4 n.s 99.0 Moderately correlated
476 L1P4a 4 n.s 74.0 Weakly correlated
477 LTR13_ 4 *** 28.9 Weakly correlated
478 LTR24B 4 n.s 74.0 Weakly correlated
479 LTR2752 4 n.s 43.0 Weakly correlated
480 LTR37-int 4 n.s 99.0 Moderately correlated
481 LTR3B_ 4 * 28.9 Weakly correlated
482 LTR47B 4 **** 74.0 Weakly correlated
483 LTR49 4 n.s 74.0 Weakly correlated
484 LTR58 4 *** 99.0 Moderately correlated
485 LTR69 4 ** 99.0 Moderately correlated
486 LTR81C 4 n.s 99.0 Moderately correlated
487 LTR84b 4 n.s 99.0 Moderately correlated
488 LTR90A 4 ** 99.0 Moderately correlated
489 MER101 4 * 74.0 Weakly correlated
490 MER21-int 4 n.s 99.0 Moderately correlated
491 MER34D 4 * 74.0 Weakly correlated
492 MER4D 4 n.s 74.0 Weakly correlated
493 MER57A1 4 n.s 43.0 Weakly correlated
494 MER57C1 4 ** 74.0 Weakly correlated
495 MER72B 4 ** 43.0 Weakly correlated
496 MLT1B-int 4 n.s 99.0 Moderately correlated
497 MLT1E1 4 n.s 99.0 Moderately correlated
498 MLT1F2-int 4 n.s 99.0 Moderately correlated
499 MLT1J1-int 4 n.s 99.0 Moderately correlated
500 MLT2A2 4 n.s 74.0 Weakly correlated
501 MSTA-int 4 n.s 43.0 Weakly correlated
502 Mam_R4 4 * 99.0 Moderately correlated
503 SVA_F 4 n.s 0.0 Weakly correlated
504 X6B_LINE 4 * 99.0 Moderately correlated
505 AluYk11 3 n.s 15.2 Weakly correlated
506 AluYk2 3 n.s 19.6 Weakly correlated
507 AluYk3 3 n.s 19.6 Weakly correlated
508 AluYk4 3 n.s 15.2 Weakly correlated
509 CR1-16_AMi 3 * 319.0 Weakly correlated
510 HERVFH21-int 3 n.s 28.9 Weakly correlated
511 Harlequin-int 3 n.s 74.0 Weakly correlated
512 L1M2a 3 n.s 87.0 Weakly correlated
513 L1M3a 3 n.s 99.0 Moderately correlated
514 L1MA1 3 n.s 74.0 Weakly correlated
515 L1PA14 3 n.s 74.0 Weakly correlated
516 L1PB 3 n.s 74.0 Weakly correlated
517 L1PBb 3 n.s 74.0 Weakly correlated
518 LOR1-int 3 n.s 74.0 Weakly correlated
519 LOR1b 3 n.s 74.0 Weakly correlated
520 LTR105_Mam 3 n.s 99.0 Moderately correlated
521 LTR16D1 3 * 99.0 Moderately correlated
522 LTR16D2 3 n.s 99.0 Moderately correlated
523 LTR27D 3 n.s 43.0 Weakly correlated
524 LTR30 3 n.s 28.9 Weakly correlated
525 LTR38 3 n.s 74.0 Weakly correlated
526 LTR3B 3 ** 28.9 Weakly correlated
527 LTR42 3 n.s 74.0 Weakly correlated
528 LTR53B 3 * 99.0 Moderately correlated
529 LTR5A 3 n.s 19.6 Weakly correlated
530 LTR61 3 * 43.0 Weakly correlated
531 LTR7B 3 n.s 28.9 Weakly correlated
532 LTR81 3 * 99.0 Moderately correlated
533 LTR82B 3 n.s 99.0 Moderately correlated
534 LTR84a 3 n.s 99.0 Moderately correlated
535 LTR86B2 3 * 99.0 Moderately correlated
536 LTR89 3 n.s 99.0 Moderately correlated
537 LTR90B 3 * 99.0 Moderately correlated
538 LTR9A1 3 n.s 43.0 Weakly correlated
539 MER101-int 3 n.s 74.0 Weakly correlated
540 MER110 3 n.s 99.0 Moderately correlated
541 MER4D0 3 n.s 74.0 Weakly correlated
542 MER50B 3 n.s 43.0 Weakly correlated
543 MER51C 3 * 43.0 Weakly correlated
544 MER52C 3 n.s 74.0 Weakly correlated
545 MER57D 3 n.s 87.0 Weakly correlated
546 MER61C 3 n.s 43.0 Weakly correlated
547 MER70B 3 n.s 87.0 Weakly correlated
548 MER83B 3 ** 43.0 Weakly correlated
549 MER87B 3 * 74.0 Weakly correlated
550 MLT1A0-int 3 n.s 99.0 Moderately correlated
551 MLT1H1-int 3 n.s 99.0 Moderately correlated
552 MLT2C2 3 n.s 99.0 Moderately correlated
553 MSTB-int 3 n.s 43.0 Weakly correlated
554 MamGypLTR1c 3 n.s 99.0 Moderately correlated
555 MamGypLTR2b 3 n.s 99.0 Moderately correlated
556 MamGypsy2-LTR 3 n.s 99.0 Moderately correlated
557 PABL_B 3 n.s 43.0 Weakly correlated
558 PRIMA4_LTR 3 n.s 74.0 Weakly correlated
559 X1_LINE 3 *** 319.0 Weakly correlated
560 X7A_LINE 3 n.s 319.0 Weakly correlated
561 AluYa5 2 n.s 15.2 Weakly correlated
562 AluYb8 2 n.s 15.2 Weakly correlated
563 AluYe5 2 n.s 74.0 Weakly correlated
564 AluYf1 2 n.s 19.6 Weakly correlated
565 AluYh9 2 ** 15.2 Weakly correlated
566 AluYi6 2 n.s 15.2 Weakly correlated
567 CR1-L3A_Croc 2 * 319.0 Weakly correlated
568 HERV-Fc1-int 2 ** 8.6 Weakly correlated
569 HERV9N-int 2 n.s 19.6 Weakly correlated
570 HERVIP10B3-int 2 n.s 28.9 Weakly correlated
571 HERVK9-int 2 n.s 28.9 Weakly correlated
572 HERVKC4-int 2 n.s 28.9 Weakly correlated
573 L1M6B 2 n.s 99.0 Moderately correlated
574 L1MDb 2 n.s 99.0 Moderately correlated
575 L1MEg1 2 n.s 99.0 Moderately correlated
576 L1P5 2 n.s 74.0 Weakly correlated
577 L1PA15-16 2 n.s 74.0 Weakly correlated
578 LOR1a 2 n.s 74.0 Weakly correlated
579 LTR103_Mam 2 n.s 99.0 Moderately correlated
580 LTR103b_Mam 2 n.s 99.0 Moderately correlated
581 LTR108e_Mam 2 n.s 99.0 Moderately correlated
582 LTR12 2 n.s 28.9 Weakly correlated
583 LTR12E 2 n.s 19.6 Weakly correlated
584 LTR12_ 2 n.s 28.9 Weakly correlated
585 LTR14 2 * 28.9 Weakly correlated
586 LTR14B 2 n.s 28.9 Weakly correlated
587 LTR14C 2 n.s 28.9 Weakly correlated
588 LTR23-int 2 n.s 74.0 Weakly correlated
589 LTR26D 2 n.s 0.0 Weakly correlated
590 LTR27C 2 n.s 43.0 Weakly correlated
591 LTR35 2 * 43.0 Weakly correlated
592 LTR38A1 2 * 74.0 Weakly correlated
593 LTR3A 2 n.s 28.9 Weakly correlated
594 LTR40A1 2 n.s 99.0 Moderately correlated
595 LTR59 2 * 43.0 Weakly correlated
596 LTR60B 2 n.s 74.0 Weakly correlated
597 LTR86A1 2 n.s 99.0 Moderately correlated
598 LTR86B1 2 n.s 99.0 Moderately correlated
599 LTR88b 2 n.s 99.0 Moderately correlated
600 MER101B 2 n.s 87.0 Weakly correlated
601 MER11A 2 n.s 28.9 Weakly correlated
602 MER34C 2 * 87.0 Weakly correlated
603 MER4A1_ 2 n.s 74.0 Weakly correlated
604 MER52-int 2 n.s 99.0 Moderately correlated
605 MER57E3 2 n.s 74.0 Weakly correlated
606 MER66-int 2 n.s 43.0 Weakly correlated
607 MER83C 2 * 43.0 Weakly correlated
608 MER95 2 * 99.0 Moderately correlated
609 MER9a3 2 n.s 28.9 Weakly correlated
610 MLT1E 2 n.s 99.0 Moderately correlated
611 MLT1E1A-int 2 * 99.0 Moderately correlated
612 MLT1F-int 2 n.s 99.0 Moderately correlated
613 MLT1G-int 2 n.s 99.0 Moderately correlated
614 MLT1H2-int 2 n.s 99.0 Moderately correlated
615 MLT1J2-int 2 n.s 99.0 Moderately correlated
616 MLT1K-int 2 * 99.0 Moderately correlated
617 MLT1O-int 2 **** 99.0 Moderately correlated
618 MSTB2 2 n.s 74.0 Weakly correlated
619 MSTD-int 2 n.s 74.0 Weakly correlated
620 MamGypLTR1b 2 n.s 99.0 Moderately correlated
621 MamRep1151 2 n.s 99.0 Moderately correlated
622 PABL_B-int 2 n.s 74.0 Weakly correlated
623 THE1A-int 2 n.s 43.0 Weakly correlated
624 UCON86 2 *** 319.0 Weakly correlated
625 X9_LINE 2 n.s 319.0 Weakly correlated
626 AluYa8 1 n.s 15.2 Weakly correlated
627 CR1-12_AMi 1 n.s 319.0 Weakly correlated
628 HERV-Fc1_LTR1 1 ** 15.2 Weakly correlated
629 HERV35I-int 1 n.s 43.0 Weakly correlated
630 HERVI-int 1 n.s 28.9 Weakly correlated
631 HERVK11-int 1 n.s 28.9 Weakly correlated
632 HERVK14C-int 1 n.s 28.9 Weakly correlated
633 HERVL32-int 1 n.s 43.0 Weakly correlated
634 L1M 1 n.s 74.0 Weakly correlated
635 L1M2c 1 n.s 87.0 Weakly correlated
636 L1M3b 1 n.s 99.0 Moderately correlated
637 L1M3d 1 n.s 99.0 Moderately correlated
638 L1M3de 1 n.s 99.0 Moderately correlated
639 L1MCb 1 n.s 99.0 Moderately correlated
640 L1P4d 1 n.s 74.0 Weakly correlated
641 L1PA8A 1 n.s 74.0 Weakly correlated
642 L5 1 n.s 99.0 Moderately correlated
643 LTR107_Mam 1 n.s 99.0 Moderately correlated
644 LTR10B1 1 n.s 28.9 Weakly correlated
645 LTR10G 1 n.s 28.9 Weakly correlated
646 LTR12D 1 n.s 19.6 Weakly correlated
647 LTR16B1 1 n.s 99.0 Moderately correlated
648 LTR19-int 1 n.s 43.0 Weakly correlated
649 LTR21B 1 * 28.9 Weakly correlated
650 LTR22E 1 n.s 28.9 Weakly correlated
651 LTR25-int 1 n.s 43.0 Weakly correlated
652 LTR28B 1 n.s 43.0 Weakly correlated
653 LTR28C 1 n.s 43.0 Weakly correlated
654 LTR38B 1 n.s 74.0 Weakly correlated
655 LTR43-int 1 n.s 74.0 Weakly correlated
656 LTR43B 1 n.s 74.0 Weakly correlated
657 LTR47B3 1 n.s 74.0 Weakly correlated
658 LTR57 1 n.s 74.0 Weakly correlated
659 LTR75B 1 n.s 99.0 Moderately correlated
660 LTR80B 1 n.s 99.0 Moderately correlated
661 LTR86A2 1 n.s 99.0 Moderately correlated
662 MER4E1 1 n.s 74.0 Weakly correlated
663 MER50C 1 n.s 43.0 Weakly correlated
664 MER51-int 1 n.s 43.0 Weakly correlated
665 MER52A 1 n.s 74.0 Weakly correlated
666 MER52D 1 n.s 74.0 Weakly correlated
667 MER68-int 1 n.s 99.0 Moderately correlated
668 MER70-int 1 n.s 99.0 Moderately correlated
669 MER70A 1 n.s 87.0 Weakly correlated
670 MER83A-int 1 n.s 99.0 Moderately correlated
671 MER88 1 n.s 99.0 Moderately correlated
672 MLT1A1-int 1 n.s 87.0 Weakly correlated
673 MLT1E1-int 1 * 99.0 Moderately correlated
674 MLT1F1-int 1 n.s 99.0 Moderately correlated
675 MLT1G1-int 1 n.s 99.0 Moderately correlated
676 MamGyp-int 1 n.s 99.0 Moderately correlated
677 MamGypLTR1d 1 n.s 99.0 Moderately correlated
678 MamGypLTR3 1 n.s 99.0 Moderately correlated
679 SVA_C 1 n.s 15.2 Weakly correlated
680 THE1B-int 1 n.s 43.0 Weakly correlated
681 THE1D-int 1 n.s 28.9 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L2a 94 n.s 99.0 Moderately correlated
2 MIRb 91 n.s 99.0 Moderately correlated
3 L2c 90 n.s 99.0 Moderately correlated
4 L2 54 n.s 99.0 Moderately correlated
5 MIR 44 n.s 99.0 Moderately correlated
6 MIRc 44 n.s 99.0 Moderately correlated
7 L2b 37 n.s 99.0 Moderately correlated
8 LTR62 35 **** 74.0 Weakly correlated
9 MIR3 32 n.s 99.0 Moderately correlated
10 MER41B 29 ** 74.0 Weakly correlated
11 MER61E 28 **** 43.0 Weakly correlated
12 LTR15 21 **** 28.9 Weakly correlated
13 L3 18 n.s 99.0 Moderately correlated
14 LTR53 16 **** 99.0 Moderately correlated
15 LTR54 16 **** 74.0 Weakly correlated
16 LTR19C 16 **** 43.0 Weakly correlated
17 MLT1K 14 n.s 99.0 Moderately correlated
18 LTR19B 14 **** 43.0 Weakly correlated
19 MLT1C 14 n.s 94.0 Highly correlated
20 LTR45C 13 **** 99.0 Moderately correlated
21 MER72 13 ** 43.0 Weakly correlated
22 AluJb 13 n.s 74.0 Weakly correlated
23 MER41E 13 **** 74.0 Weakly correlated
24 MER41A 13 n.s 74.0 Weakly correlated
25 MLT1J 12 n.s 99.0 Moderately correlated
26 MER49 12 n.s 43.0 Weakly correlated
27 LTR73 12 **** 99.0 Moderately correlated
28 LTR6B 11 **** 19.6 Weakly correlated
29 LTR13A 11 **** 28.9 Weakly correlated
30 LTR46 11 **** 43.0 Weakly correlated
31 HAL1 10 n.s 99.0 Moderately correlated
32 MER89 10 n.s 99.0 Moderately correlated
33 L1MC4 10 n.s 99.0 Moderately correlated
34 MER54B 10 *** 87.0 Weakly correlated
35 LTR6A 10 **** 28.9 Weakly correlated
36 MLT1B 10 n.s 99.0 Moderately correlated
37 MER61F 9 **** 43.0 Weakly correlated
38 L1MEd 9 n.s 99.0 Moderately correlated
39 LTR21A 9 **** 28.9 Weakly correlated
40 LTR52 8 n.s 99.0 Moderately correlated
41 MLT1F 8 n.s 99.0 Moderately correlated
42 LTR76 8 **** 74.0 Weakly correlated
43 HERVH-int 8 n.s 28.9 Weakly correlated
44 LTR55 7 ** 99.0 Moderately correlated
45 MLT1D 7 n.s 99.0 Moderately correlated
46 AluJo 7 n.s 74.0 Weakly correlated
47 MLT1L 7 n.s 99.0 Moderately correlated
48 AluJr 7 n.s 74.0 Weakly correlated
49 MLT1H 7 n.s 99.0 Moderately correlated
50 MER65D 7 ** 87.0 Weakly correlated
51 LTR25 7 ** 43.0 Weakly correlated
52 LTR4 7 **** 28.9 Weakly correlated
53 MIR1_Amn 7 n.s 319.0 Weakly correlated
54 L1MC3 7 n.s 99.0 Moderately correlated
55 MLT1I 6 n.s 99.0 Moderately correlated
56 L1M4 6 n.s 99.0 Moderately correlated
57 L1MB3 6 n.s 99.0 Moderately correlated
58 L3b 6 n.s 99.0 Moderately correlated
59 HERV1_LTRc 6 **** 28.9 Weakly correlated
60 LTR5B 6 n.s 28.9 Weakly correlated
61 L1MC5a 6 n.s 99.0 Moderately correlated
62 MER74B 6 n.s 99.0 Moderately correlated
63 MSTD 6 n.s 74.0 Weakly correlated
64 LTR24 6 ** 74.0 Weakly correlated
65 LTR5_Hs 6 n.s 0.0 Weakly correlated
66 LTR75_1 6 **** 99.0 Moderately correlated
67 LTR8 5 n.s 43.0 Weakly correlated
68 MLT1G3 5 n.s 99.0 Moderately correlated
69 L1MB2 5 n.s 99.0 Moderately correlated
70 MLT1A 5 n.s 99.0 Moderately correlated
71 LTR9D 5 n.s 43.0 Weakly correlated
72 MLT1A0 5 n.s 99.0 Moderately correlated
73 LTR13 5 n.s 19.6 Weakly correlated
74 LTR33 5 n.s 99.0 Moderately correlated
75 LTR16C 5 n.s 99.0 Moderately correlated
76 LTR71B 5 * 43.0 Weakly correlated
77 MER4C 5 n.s 74.0 Weakly correlated
78 MER34A 5 n.s 99.0 Moderately correlated
79 MER77B 5 n.s 99.0 Moderately correlated
80 HERV1_LTRa 5 **** 28.9 Weakly correlated
81 LTR32 4 n.s 43.0 Weakly correlated
82 MamRTE1 4 n.s 99.0 Moderately correlated
83 HERVK22-int 4 n.s 43.0 Weakly correlated
84 MER11D 4 n.s 19.6 Weakly correlated
85 HERV1_LTRe 4 **** 43.0 Weakly correlated
86 L1MC5 4 n.s 99.0 Moderately correlated
87 L1ME4a 4 n.s 99.0 Moderately correlated
88 LTR36 4 n.s 74.0 Weakly correlated
89 LTR50 4 n.s 99.0 Moderately correlated
90 MER4CL34 4 n.s 43.0 Weakly correlated
91 MLT1H2 4 n.s 99.0 Moderately correlated
92 Plat_L3 4 n.s 99.0 Moderately correlated
93 L1ME3A 4 n.s 99.0 Moderately correlated
94 L2-3_Crp 4 n.s 431.0 Weakly correlated
95 LTR47A 4 n.s 74.0 Weakly correlated
96 MER34 4 n.s 87.0 Weakly correlated
97 MLT1F2 4 n.s 99.0 Moderately correlated
98 MLT1J1 4 n.s 99.0 Moderately correlated
99 L4_A_Mam 4 n.s 99.0 Moderately correlated
100 LTR9 4 n.s 43.0 Weakly correlated
101 MER83 4 n.s 43.0 Weakly correlated
102 MSTA 4 n.s 43.0 Weakly correlated
103 L1MB7 4 n.s 99.0 Moderately correlated
104 L1MEg 4 n.s 99.0 Moderately correlated
105 LTR65 4 n.s 99.0 Moderately correlated
106 L1ME1 4 n.s 99.0 Moderately correlated
107 L1ME3Cz 4 n.s 99.0 Moderately correlated
108 LTR54B 4 n.s 74.0 Weakly correlated
109 LTR8B 4 n.s 43.0 Weakly correlated
110 MER77 4 n.s 99.0 Moderately correlated
111 MER67B 3 n.s 99.0 Moderately correlated
112 ERVL-E-int 3 n.s 99.0 Moderately correlated
113 L1PB1 3 n.s 74.0 Weakly correlated
114 MER50 3 n.s 43.0 Weakly correlated
115 MLT1N2 3 n.s 99.0 Moderately correlated
116 MER4B 3 n.s 74.0 Weakly correlated
117 MER4D 3 n.s 74.0 Weakly correlated
118 MER87 3 * 43.0 Weakly correlated
119 MamSINE1 3 n.s 99.0 Moderately correlated
120 ERVL-B4-int 3 n.s 99.0 Moderately correlated
121 L1M5 3 n.s 99.0 Moderately correlated
122 L1ME3G 3 n.s 99.0 Moderately correlated
123 L4_C_Mam 3 n.s 99.0 Moderately correlated
124 MER21C 3 n.s 99.0 Moderately correlated
125 HAL1ME 3 n.s 99.0 Moderately correlated
126 L1MA9 3 n.s 99.0 Moderately correlated
127 LTR10D 3 * 28.9 Weakly correlated
128 MER41D 3 n.s 74.0 Weakly correlated
129 MLT1I-int 3 n.s 99.0 Moderately correlated
130 HAL1b 3 n.s 99.0 Moderately correlated
131 L1MEc 3 n.s 99.0 Moderately correlated
132 MER4E 3 n.s 74.0 Weakly correlated
133 MER70C 3 n.s 99.0 Moderately correlated
134 MER92C 3 ** 99.0 Moderately correlated
135 MLT2B2 3 n.s 99.0 Moderately correlated
136 HUERS-P3-int 3 n.s 43.0 Weakly correlated
137 LTR78 3 n.s 99.0 Moderately correlated
138 MER34C2 3 n.s 74.0 Weakly correlated
139 MER4A1 3 n.s 74.0 Weakly correlated
140 HERVP71A-int 2 n.s 43.0 Weakly correlated
141 L1ME4c 2 n.s 99.0 Moderately correlated
142 L2-1_AMi 2 n.s 319.0 Weakly correlated
143 LTR31 2 n.s 74.0 Weakly correlated
144 LTR47A2 2 n.s 74.0 Weakly correlated
145 LTR81A 2 n.s 99.0 Moderately correlated
146 LTR85b 2 n.s 99.0 Moderately correlated
147 MER110 2 n.s 99.0 Moderately correlated
148 MER34A1 2 n.s 99.0 Moderately correlated
149 MLT1E3 2 n.s 99.0 Moderately correlated
150 MLT1F1 2 n.s 99.0 Moderately correlated
151 MLT1M 2 n.s 99.0 Moderately correlated
152 L1ME4b 2 n.s 99.0 Moderately correlated
153 L1MEb 2 n.s 99.0 Moderately correlated
154 L1PA14 2 n.s 74.0 Weakly correlated
155 LTR71A 2 n.s 43.0 Weakly correlated
156 HERVIP10FH-int 2 n.s 28.9 Weakly correlated
157 L1M4b 2 n.s 99.0 Moderately correlated
158 LTR19A 2 n.s 43.0 Weakly correlated
159 LTR85a 2 n.s 99.0 Moderately correlated
160 PABL_A 2 n.s 43.0 Weakly correlated
161 L1M1 2 n.s 74.0 Weakly correlated
162 L1ME2 2 n.s 99.0 Moderately correlated
163 LTR64 2 n.s 74.0 Weakly correlated
164 MER34B 2 n.s 87.0 Weakly correlated
165 MER68 2 n.s 99.0 Moderately correlated
166 CR1-3_Croc 2 n.s 319.0 Weakly correlated
167 HERVE-int 2 n.s 19.6 Weakly correlated
168 L1MCc 2 n.s 99.0 Moderately correlated
169 MER61B 2 n.s 43.0 Weakly correlated
170 MLT1G 2 n.s 99.0 Moderately correlated
171 MLT1H1 2 n.s 99.0 Moderately correlated
172 AluSq2 2 n.s 74.0 Weakly correlated
173 L1MD1 2 n.s 99.0 Moderately correlated
174 L1PA11 2 n.s 74.0 Weakly correlated
175 LTR39 2 n.s 43.0 Weakly correlated
176 MER61D 2 n.s 43.0 Weakly correlated
177 THE1C 2 n.s 43.0 Weakly correlated
178 HUERS-P1-int 2 n.s 43.0 Weakly correlated
179 L1MD2 2 n.s 99.0 Moderately correlated
180 LTR10B 2 * 28.9 Weakly correlated
181 LTR16E1 2 n.s 99.0 Moderately correlated
182 LTR58 2 * 99.0 Moderately correlated
183 LTR77 2 n.s 94.0 Highly correlated
184 MER61C 2 n.s 43.0 Weakly correlated
185 MLT1E2 2 n.s 99.0 Moderately correlated
186 MLT1J2 2 n.s 99.0 Moderately correlated
187 MamRep605 2 n.s 99.0 Moderately correlated
188 X1_LINE 2 ** 319.0 Weakly correlated
189 L1M7 2 n.s 99.0 Moderately correlated
190 L1MA8 2 n.s 87.0 Weakly correlated
191 L1MB5 2 n.s 99.0 Moderately correlated
192 L1MC 2 n.s 99.0 Moderately correlated
193 L1PA16 2 n.s 74.0 Weakly correlated
194 L1PBa1 2 n.s 74.0 Weakly correlated
195 LTR1A2 2 n.s 43.0 Weakly correlated
196 LTR33A_ 2 n.s 99.0 Moderately correlated
197 LTR44 2 n.s 74.0 Weakly correlated
198 THE1B 2 n.s 43.0 Weakly correlated
199 L1M6B 1 n.s 99.0 Moderately correlated
200 L1ME3B 1 n.s 99.0 Moderately correlated
201 L1ME3E 1 n.s 99.0 Moderately correlated
202 L1PA12 1 n.s 74.0 Weakly correlated
203 L1PA7 1 n.s 74.0 Weakly correlated
204 LTR101_Mam 1 n.s 99.0 Moderately correlated
205 LTR10E 1 n.s 28.9 Weakly correlated
206 LTR16D 1 n.s 99.0 Moderately correlated
207 LTR27C 1 n.s 43.0 Weakly correlated
208 LTR29 1 n.s 43.0 Weakly correlated
209 LTR35 1 n.s 43.0 Weakly correlated
210 LTR53B 1 n.s 99.0 Moderately correlated
211 MER110A 1 n.s 99.0 Moderately correlated
212 MER34-int 1 n.s 99.0 Moderately correlated
213 MER65B 1 n.s 74.0 Weakly correlated
214 MER70A 1 n.s 87.0 Weakly correlated
215 MLT1F1-int 1 n.s 99.0 Moderately correlated
216 MSTB1 1 n.s 74.0 Weakly correlated
217 AluSq 1 n.s 74.0 Weakly correlated
218 ERV3-16A3_I-int 1 n.s 99.0 Moderately correlated
219 HERV9-int 1 n.s 28.9 Weakly correlated
220 HERVK14-int 1 n.s 28.9 Weakly correlated
221 HERVL32-int 1 n.s 43.0 Weakly correlated
222 L1MC4a 1 n.s 99.0 Moderately correlated
223 L1MDa 1 n.s 99.0 Moderately correlated
224 L1MEf 1 n.s 99.0 Moderately correlated
225 L1MEh 1 n.s 99.0 Moderately correlated
226 L1PA17 1 n.s 74.0 Weakly correlated
227 LFSINE_Vert 1 n.s 319.0 Weakly correlated
228 LTR16A1 1 n.s 99.0 Moderately correlated
229 LTR38A1 1 n.s 74.0 Weakly correlated
230 MER21A 1 n.s 74.0 Weakly correlated
231 MER31-int 1 n.s 99.0 Moderately correlated
232 MER70B 1 n.s 87.0 Weakly correlated
233 MER72B 1 n.s 43.0 Weakly correlated
234 MER84 1 n.s 43.0 Weakly correlated
235 MER87B 1 n.s 74.0 Weakly correlated
236 MLT1E1A 1 n.s 99.0 Moderately correlated
237 MLT1J2-int 1 n.s 99.0 Moderately correlated
238 AmnSINE1 1 n.s 319.0 Weakly correlated
239 ERV3-16A3_LTR 1 n.s 99.0 Moderately correlated
240 FLAM_A 1 n.s 74.0 Weakly correlated
241 HERVFH21-int 1 n.s 28.9 Weakly correlated
242 L1MB8 1 n.s 99.0 Moderately correlated
243 L1MD 1 n.s 99.0 Moderately correlated
244 L1P2 1 n.s 28.9 Weakly correlated
245 L1P3 1 n.s 74.0 Weakly correlated
246 L1PA15 1 n.s 74.0 Weakly correlated
247 L1PA15-16 1 n.s 74.0 Weakly correlated
248 LTR12C 1 n.s 19.6 Weakly correlated
249 LTR16E2 1 n.s 99.0 Moderately correlated
250 LTR26 1 n.s 74.0 Weakly correlated
251 LTR3B 1 n.s 28.9 Weakly correlated
252 LTR82B 1 n.s 99.0 Moderately correlated
253 MER21-int 1 n.s 99.0 Moderately correlated
254 MER4B-int 1 n.s 99.0 Moderately correlated
255 MER66C 1 n.s 43.0 Weakly correlated
256 MER83C 1 n.s 43.0 Weakly correlated
257 MER90a 1 n.s 99.0 Moderately correlated
258 AluSx 1 n.s 74.0 Weakly correlated
259 HERVL40-int 1 n.s 99.0 Moderately correlated
260 L1M4a1 1 n.s 99.0 Moderately correlated
261 L1MD3 1 n.s 99.0 Moderately correlated
262 L1P4d 1 n.s 74.0 Weakly correlated
263 L1PA6 1 n.s 28.9 Weakly correlated
264 LTR30 1 n.s 28.9 Weakly correlated
265 LTR34 1 n.s 74.0 Weakly correlated
266 LTR48 1 n.s 74.0 Weakly correlated
267 LTR48B 1 n.s 74.0 Weakly correlated
268 LTR49-int 1 n.s 74.0 Weakly correlated
269 LTR80B 1 n.s 99.0 Moderately correlated
270 LTR8A 1 n.s 43.0 Weakly correlated
271 MER4-int 1 n.s 74.0 Weakly correlated
272 MER41-int 1 n.s 74.0 Weakly correlated
273 MER41C 1 n.s 74.0 Weakly correlated
274 MER50-int 1 n.s 43.0 Weakly correlated
275 MER65A 1 n.s 74.0 Weakly correlated
276 MER67C 1 n.s 99.0 Moderately correlated
277 MER74C 1 n.s 99.0 Moderately correlated
278 MER92B 1 n.s 99.0 Moderately correlated
279 MSTB-int 1 n.s 43.0 Weakly correlated
280 MamGypsy2-I 1 n.s 99.0 Moderately correlated
281 THE1D 1 n.s 43.0 Weakly correlated
282 AluSc 1 n.s 74.0 Weakly correlated
283 ERVL-int 1 n.s 99.0 Moderately correlated
284 FLAM_C 1 n.s 74.0 Weakly correlated
285 HERV1_LTRd 1 ** 43.0 Weakly correlated
286 L1M3 1 n.s 99.0 Moderately correlated
287 L1MA5A 1 n.s 87.0 Weakly correlated
288 L1MA6 1 n.s 87.0 Weakly correlated
289 L1MEi 1 n.s 99.0 Moderately correlated
290 LTR12E 1 n.s 19.6 Weakly correlated
291 LTR14 1 n.s 28.9 Weakly correlated
292 LTR18B 1 n.s 43.0 Weakly correlated
293 LTR18C 1 n.s 43.0 Weakly correlated
294 LTR40c 1 n.s 99.0 Moderately correlated
295 LTR60B 1 n.s 74.0 Weakly correlated
296 LTR9B 1 n.s 43.0 Weakly correlated
297 MER4A 1 n.s 74.0 Weakly correlated
298 MER4D1 1 n.s 74.0 Weakly correlated
299 MER88 1 n.s 99.0 Moderately correlated
300 MLT1G1 1 n.s 99.0 Moderately correlated
301 MLT1J-int 1 n.s 99.0 Moderately correlated
302 AluSx1 1 n.s 74.0 Weakly correlated
303 HERVH48-int 1 n.s 28.9 Weakly correlated
304 HERVK11-int 1 n.s 28.9 Weakly correlated
305 L1M8 1 n.s 99.0 Moderately correlated
306 LTR13_ 1 n.s 28.9 Weakly correlated
307 LTR16A 1 n.s 99.0 Moderately correlated
308 LTR3 1 n.s 28.9 Weakly correlated
309 LTR41C 1 n.s 99.0 Moderately correlated
310 LTR9A1 1 n.s 43.0 Weakly correlated
311 MER39 1 n.s 74.0 Weakly correlated
312 MER51E 1 n.s 43.0 Weakly correlated
313 MER57-int 1 n.s 87.0 Weakly correlated
314 MER92A 1 n.s 99.0 Moderately correlated
315 MLT1E1 1 n.s 99.0 Moderately correlated
316 MLT2B1 1 n.s 99.0 Moderately correlated
317 MSTB 1 n.s 43.0 Weakly correlated
318 PRIMA4_LTR 1 n.s 74.0 Weakly correlated
319 SVA_B 1 n.s 15.2 Weakly correlated
320 THE1C-int 1 n.s 43.0 Weakly correlated
321 AluSz 1 n.s 74.0 Weakly correlated
322 AluSz6 1 n.s 74.0 Weakly correlated
323 L1M6 1 n.s 99.0 Moderately correlated
324 L1MA1 1 n.s 74.0 Weakly correlated
325 L1MA2 1 n.s 74.0 Weakly correlated
326 L1MA4 1 n.s 87.0 Weakly correlated
327 L1MC1 1 n.s 99.0 Moderately correlated
328 L1MCa 1 n.s 99.0 Moderately correlated
329 L1MCb 1 n.s 99.0 Moderately correlated
330 L1ME3 1 n.s 99.0 Moderately correlated
331 L1PA10 1 n.s 74.0 Weakly correlated
332 LTR16A2 1 n.s 99.0 Moderately correlated
333 LTR33A 1 n.s 99.0 Moderately correlated
334 LTR41B 1 n.s 99.0 Moderately correlated
335 LTR56 1 n.s 74.0 Weakly correlated
336 LTR67B 1 n.s 99.0 Moderately correlated
337 LTR75 1 n.s 99.0 Moderately correlated
338 MER101-int 1 n.s 74.0 Weakly correlated
339 MER54A 1 n.s 87.0 Weakly correlated
340 MER57B2 1 n.s 43.0 Weakly correlated
341 MLT1C-int 1 n.s 94.0 Highly correlated
342 Mam_R4 1 n.s 99.0 Moderately correlated
343 CR1_Mam 1 n.s 99.0 Moderately correlated
344 HERV16-int 1 n.s 99.0 Moderately correlated
345 L1ME3C 1 n.s 99.0 Moderately correlated
346 LOR1-int 1 n.s 74.0 Weakly correlated
347 LTR104_Mam 1 n.s 99.0 Moderately correlated
348 LTR37-int 1 n.s 99.0 Moderately correlated
349 LTR82A 1 n.s 99.0 Moderately correlated
350 MER31A 1 n.s 87.0 Weakly correlated
351 MER34D 1 n.s 74.0 Weakly correlated
352 MER48 1 n.s 28.9 Weakly correlated
353 MER51-int 1 n.s 43.0 Weakly correlated
354 MER51C 1 n.s 43.0 Weakly correlated
355 MER73 1 n.s 87.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 HAL1 99.0 Moderately correlated
2 HERV1_LTRC 28.9 Weakly correlated
3 HERVH-INT 28.9 Weakly correlated
4 L1M4 99.0 Moderately correlated
5 L1MC3 99.0 Moderately correlated
6 L1MC4 99.0 Moderately correlated
7 L1MC5A 99.0 Moderately correlated
8 L1MED 99.0 Moderately correlated
9 L2 99.0 Moderately correlated
10 L2A 99.0 Moderately correlated
11 L2B 99.0 Moderately correlated
12 L2C 99.0 Moderately correlated
13 L3 99.0 Moderately correlated
14 L3B 99.0 Moderately correlated
15 LTR13A 28.9 Weakly correlated
16 LTR15 28.9 Weakly correlated
17 LTR19B 43.0 Weakly correlated
18 LTR19C 43.0 Weakly correlated
19 LTR21A 28.9 Weakly correlated
20 LTR24 74.0 Weakly correlated
21 LTR25 43.0 Weakly correlated
22 LTR4 28.9 Weakly correlated
23 LTR45C 99.0 Moderately correlated
24 LTR46 43.0 Weakly correlated
25 LTR53 99.0 Moderately correlated
26 LTR54 74.0 Weakly correlated
27 LTR55 99.0 Moderately correlated
28 LTR5B 28.9 Weakly correlated
29 LTR5_HS 0.0 Weakly correlated
30 LTR62 74.0 Weakly correlated
31 LTR6A 28.9 Weakly correlated
32 LTR6B 19.6 Weakly correlated
33 LTR73 99.0 Moderately correlated
34 LTR75_1 99.0 Moderately correlated
35 LTR76 74.0 Weakly correlated
36 MER41A 74.0 Weakly correlated
37 MER41B 74.0 Weakly correlated
38 MER41E 74.0 Weakly correlated
39 MER54B 87.0 Weakly correlated
40 MER61E 43.0 Weakly correlated
41 MER61F 43.0 Weakly correlated
42 MER65D 87.0 Weakly correlated
43 MER72 43.0 Weakly correlated
44 MER74B 99.0 Moderately correlated
45 MER89 99.0 Moderately correlated
46 MIR 99.0 Moderately correlated
47 MIR1_AMN 319.0 Weakly correlated
48 MIR3 99.0 Moderately correlated
49 MIRB 99.0 Moderately correlated
50 MIRC 99.0 Moderately correlated
51 MLT1B 99.0 Moderately correlated
52 MLT1C 94.0 Highly correlated
53 MLT1D 99.0 Moderately correlated
54 MLT1J 99.0 Moderately correlated
55 MLT1L 99.0 Moderately correlated
56 MSTD 74.0 Weakly correlated