ZRdb KZFP & Repeats
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Human_ZNF141

  • Protein
    Zinc finger protein 141
  • Length
    474
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    43.0 Mya
  • Time of Changing in binding specificity
    43.0 Mya
  • Uniprot_ID
    Q15928
  • NCBI_ID
    7700
Sequence:
MELLTFRDVAIEFSPEEWKCLDPDQQNLYRDVMLENYRNLVSLGVAISNPDLVTCLEQRKEPYNVKIHKIVARPPAMCSHFTQDHWPVQGIEDSFHKLILRRYEKCGHDNLQLRKGCKSLNECKLQKGGYNEFNECLSTTQSKILQCKASVKVVSKFSNSNKRKTRHTGEKHFKECGKSFQKFSHLTQHKVIHAGEKPYTCEECGKAFKWSLIFNEHKRIHTGEKPFTCEECGSIFTTSSHFAKHKIIHTGEKPYKCEECGKAFNRFTTLTKHKRIHAGEKPITCEECRKIFTSSSNFAKHKRIHTGEKPYKCEECGKAFNRSTTLTKHKRIHTGEKPYTCEECGKAFRQSSKLNEHKKVHTGERPYKCDECGKAFGRSRVLNEHKKIHTGEKPYKCEECGKAFRRSTDRSQHKKIHSADKPYKCKECDKAFKQFSLLSQHKKIHTVDKPYKCKDCDKAFKRFSHLNKHKKIHT
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
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# Domain name Pos
1 KRAB 4..75
2 C2h2 171..193
3 C2h2 199..221
4 C2h2 227..249
5 C2h2 255..277
6 C2h2 283..305
7 C2h2 311..333
8 C2h2 339..361
9 C2h2 367..389
10 C2h2 395..417
11 C2h2 423..445
12 C2h2 451..473
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Biological Process anatomical structure morphogenesis
6 Biological Process limb morphogenesis
7 Biological Process negative regulation of transcription by RNA polymerase II
8 Biological Process regulation of DNA-templated transcription
9 Biological Process transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
...
Reverse:
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1PA3 309 **** 19.6 Weakly correlated
2 L1PA7 214 **** 74.0 Weakly correlated
3 L1PA2 202 **** 15.2 Weakly correlated
4 L1PA6 163 **** 28.9 Weakly correlated
5 L1PA5 159 **** 19.6 Weakly correlated
6 L1PA4 146 **** 19.6 Weakly correlated
7 SVA_B 96 **** 15.2 Weakly correlated
8 MIRb 74 n.s 99.0 Weakly correlated
9 L2a 71 n.s 99.0 Weakly correlated
10 AluJb 69 n.s 74.0 Weakly correlated
11 L1P3 66 **** 74.0 Weakly correlated
12 AluY 62 n.s 74.0 Weakly correlated
13 AluSx 58 n.s 74.0 Weakly correlated
14 L1P2 58 **** 28.9 Weakly correlated
15 SVA_C 58 **** 15.2 Weakly correlated
16 L2c 57 n.s 99.0 Weakly correlated
17 MIR 54 n.s 99.0 Weakly correlated
18 AluSz 47 n.s 74.0 Weakly correlated
19 HUERS-P3-int 42 **** 43.0 Highly correlated
20 MIR3 40 ** 99.0 Weakly correlated
21 HUERS-P3b-int 39 **** 43.0 Highly correlated
22 L1PA8 39 **** 74.0 Weakly correlated
23 MIRc 39 n.s 99.0 Weakly correlated
24 AluJr 38 n.s 74.0 Weakly correlated
25 AluSx1 38 n.s 74.0 Weakly correlated
26 L2b 38 n.s 99.0 Weakly correlated
27 L1P1 37 **** 19.6 Weakly correlated
28 MSTA 34 **** 43.0 Highly correlated
29 L1HS 32 **** 8.6 Weakly correlated
30 L2 31 n.s 99.0 Weakly correlated
31 AluJo 28 n.s 74.0 Weakly correlated
32 AluSq2 24 n.s 74.0 Weakly correlated
33 AluSz6 23 n.s 74.0 Weakly correlated
34 MLT1C 23 * 94.0 Weakly correlated
35 THE1B 22 n.s 43.0 Highly correlated
36 THE1B-int 20 * 43.0 Highly correlated
37 L3 19 n.s 99.0 Weakly correlated
38 MLT1K 19 ** 99.0 Weakly correlated
39 SVA_D 19 **** 15.2 Weakly correlated
40 LTR13 18 **** 19.6 Weakly correlated
41 L1PA10 17 n.s 74.0 Weakly correlated
42 LTR12C 16 * 19.6 Weakly correlated
43 L1ME1 15 n.s 99.0 Weakly correlated
44 MER21B 15 **** 99.0 Weakly correlated
45 SVA_A 15 **** 19.6 Weakly correlated
46 THE1D 15 n.s 43.0 Highly correlated
47 AluSc 14 n.s 74.0 Weakly correlated
48 AluSc8 14 n.s 74.0 Weakly correlated
49 AluSp 13 n.s 74.0 Weakly correlated
50 HERVH-int 13 n.s 28.9 Weakly correlated
51 L1M5 13 n.s 99.0 Weakly correlated
52 MER50 13 **** 43.0 Highly correlated
53 MLT1A0 13 n.s 99.0 Weakly correlated
54 MLT1J 13 n.s 99.0 Weakly correlated
55 AluSg 12 n.s 74.0 Weakly correlated
56 L1PA16 12 n.s 74.0 Weakly correlated
57 LTR10F 12 **** 28.9 Weakly correlated
58 L1MC1 11 n.s 99.0 Weakly correlated
59 MER21C 11 * 99.0 Weakly correlated
60 MLT1D 11 n.s 99.0 Weakly correlated
61 THE1D-int 11 * 28.9 Weakly correlated
62 AluSx4 10 n.s 74.0 Weakly correlated
63 L1PA13 10 n.s 74.0 Weakly correlated
64 LTR17 10 **** 28.9 Weakly correlated
65 MLT1A 10 n.s 99.0 Weakly correlated
66 MLT1B 10 n.s 99.0 Weakly correlated
67 AluSx3 9 n.s 74.0 Weakly correlated
68 HAL1 9 n.s 99.0 Weakly correlated
69 HERVL18-int 9 **** 43.0 Highly correlated
70 L1PREC2 9 n.s 43.0 Highly correlated
71 LTR10A 9 **** 28.9 Weakly correlated
72 MER21A 9 **** 74.0 Weakly correlated
73 MLT1A1 9 * 87.0 Weakly correlated
74 THE1C 9 n.s 43.0 Highly correlated
75 L1MB3 8 n.s 99.0 Weakly correlated
76 L1MD2 8 n.s 99.0 Weakly correlated
77 L1PB1 8 n.s 74.0 Weakly correlated
78 LTR27B 8 **** 43.0 Highly correlated
79 LTR33 8 n.s 99.0 Weakly correlated
80 MER51B 8 **** 43.0 Highly correlated
81 ERVL-E-int 7 n.s 99.0 Weakly correlated
82 HERVS71-int 7 **** 28.9 Weakly correlated
83 L1ME4b 7 n.s 99.0 Weakly correlated
84 L1MEd 7 n.s 99.0 Weakly correlated
85 L1PA17 7 n.s 74.0 Weakly correlated
86 LTR28C 7 **** 43.0 Highly correlated
87 MLT1E1A 7 * 99.0 Weakly correlated
88 AluSq 6 n.s 74.0 Weakly correlated
89 FLAM_C 6 n.s 74.0 Weakly correlated
90 FRAM 6 * 74.0 Weakly correlated
91 L1M1 6 n.s 74.0 Weakly correlated
92 L1M4 6 n.s 99.0 Weakly correlated
93 L1M4b 6 n.s 99.0 Weakly correlated
94 L1MCc 6 n.s 99.0 Weakly correlated
95 L1PA11 6 n.s 74.0 Weakly correlated
96 LTR25-int 6 *** 43.0 Highly correlated
97 LTR2752 6 **** 43.0 Highly correlated
98 LTR27C 6 **** 43.0 Highly correlated
99 MER51-int 6 **** 43.0 Highly correlated
100 MIR1_Amn 6 * 319.0 Weakly correlated
101 MLT1I 6 n.s 99.0 Weakly correlated
102 THE1A-int 6 n.s 43.0 Highly correlated
103 ERV3-16A3_I-int 5 n.s 99.0 Weakly correlated
104 L1MA9 5 n.s 99.0 Weakly correlated
105 L1MB5 5 n.s 99.0 Weakly correlated
106 L1MC2 5 n.s 99.0 Weakly correlated
107 L1MC3 5 n.s 99.0 Weakly correlated
108 L1MCa 5 n.s 99.0 Weakly correlated
109 L1MDa 5 n.s 99.0 Weakly correlated
110 L1ME2 5 n.s 99.0 Weakly correlated
111 L1ME4a 5 n.s 99.0 Weakly correlated
112 L1MEc 5 n.s 99.0 Weakly correlated
113 LTR16C 5 n.s 99.0 Weakly correlated
114 LTR1A1 5 **** 43.0 Highly correlated
115 LTR78 5 n.s 99.0 Weakly correlated
116 MER4B-int 5 * 99.0 Weakly correlated
117 MER50-int 5 *** 43.0 Highly correlated
118 MER51A 5 *** 43.0 Highly correlated
119 MLT1G 5 * 99.0 Weakly correlated
120 MLT1O 5 * 99.0 Weakly correlated
121 AluSg4 4 n.s 74.0 Weakly correlated
122 AluYj4 4 * 0.0 Weakly correlated
123 AluYm1 4 n.s 19.6 Weakly correlated
124 HAL1ME 4 n.s 99.0 Weakly correlated
125 HERV4_I-int 4 *** 43.0 Highly correlated
126 HERVE-int 4 * 19.6 Weakly correlated
127 L1MB2 4 n.s 99.0 Weakly correlated
128 L1MB7 4 n.s 99.0 Weakly correlated
129 L1MC4 4 n.s 99.0 Weakly correlated
130 L1MC5 4 n.s 99.0 Weakly correlated
131 L1MD1 4 n.s 99.0 Weakly correlated
132 L1ME3A 4 n.s 99.0 Weakly correlated
133 L1MEg 4 n.s 99.0 Weakly correlated
134 L1PA15 4 n.s 74.0 Weakly correlated
135 L1PBa1 4 * 74.0 Weakly correlated
136 LTR1A2 4 * 43.0 Highly correlated
137 LTR50 4 * 99.0 Weakly correlated
138 LTR79 4 n.s 99.0 Weakly correlated
139 MLT1H 4 n.s 99.0 Weakly correlated
140 MSTB 4 n.s 43.0 Highly correlated
141 MSTD 4 n.s 74.0 Weakly correlated
142 THE1C-int 4 n.s 43.0 Highly correlated
143 AluSg7 3 n.s 74.0 Weakly correlated
144 AluYa5 3 n.s 15.2 Weakly correlated
145 HERV16-int 3 n.s 99.0 Weakly correlated
146 HERVK22-int 3 n.s 43.0 Highly correlated
147 L1M2 3 n.s 99.0 Weakly correlated
148 L1M2c 3 * 87.0 Weakly correlated
149 L1M3 3 n.s 99.0 Weakly correlated
150 L1M3b 3 * 99.0 Weakly correlated
151 L1MA3 3 n.s 74.0 Weakly correlated
152 L1MA8 3 n.s 87.0 Weakly correlated
153 L1MB8 3 n.s 99.0 Weakly correlated
154 L1MC 3 n.s 99.0 Weakly correlated
155 L1MC4a 3 n.s 99.0 Weakly correlated
156 L1MEf 3 n.s 99.0 Weakly correlated
157 L1PA12 3 n.s 74.0 Weakly correlated
158 LTR104_Mam 3 * 99.0 Weakly correlated
159 LTR12D 3 * 19.6 Weakly correlated
160 LTR16A 3 n.s 99.0 Weakly correlated
161 LTR40b 3 * 99.0 Weakly correlated
162 LTR67B 3 n.s 99.0 Weakly correlated
163 LTR88b 3 ** 99.0 Weakly correlated
164 LTR9B 3 ** 43.0 Highly correlated
165 MER11D 3 ** 19.6 Weakly correlated
166 MER39 3 n.s 74.0 Weakly correlated
167 MER39B 3 * 74.0 Weakly correlated
168 MER52A 3 n.s 74.0 Weakly correlated
169 MER52D 3 n.s 74.0 Weakly correlated
170 MER61-int 3 n.s 43.0 Highly correlated
171 MER74A 3 n.s 99.0 Weakly correlated
172 MER89 3 * 99.0 Weakly correlated
173 MLT1A0-int 3 n.s 99.0 Weakly correlated
174 MLT1E1 3 * 99.0 Weakly correlated
175 MLT1J1 3 n.s 99.0 Weakly correlated
176 MLT1L 3 n.s 99.0 Weakly correlated
177 MSTC 3 n.s 74.0 Weakly correlated
178 MamRTE1 3 n.s 99.0 Weakly correlated
179 MamRep605 3 n.s 99.0 Weakly correlated
180 SVA_F 3 n.s 0.0 Weakly correlated
181 THE1A 3 n.s 43.0 Highly correlated
182 AluJr4 2 n.s 74.0 Weakly correlated
183 AluSc5 2 n.s 74.0 Weakly correlated
184 AluSq10 2 n.s 74.0 Weakly correlated
185 AluYb8 2 n.s 15.2 Weakly correlated
186 ERVL-B4-int 2 n.s 99.0 Weakly correlated
187 HERVFH21-int 2 ** 28.9 Weakly correlated
188 HERVIP10FH-int 2 n.s 28.9 Weakly correlated
189 HERVK-int 2 n.s 28.9 Weakly correlated
190 HERVK13-int 2 ** 19.6 Weakly correlated
191 L1M4c 2 n.s 99.0 Weakly correlated
192 L1MA4 2 n.s 87.0 Weakly correlated
193 L1MA5 2 n.s 87.0 Weakly correlated
194 L1MA6 2 n.s 87.0 Weakly correlated
195 L1MC5a 2 n.s 99.0 Weakly correlated
196 L1MD3 2 n.s 99.0 Weakly correlated
197 L1ME3E 2 n.s 99.0 Weakly correlated
198 L1ME3F 2 n.s 99.0 Weakly correlated
199 L1ME3G 2 n.s 99.0 Weakly correlated
200 L1ME4c 2 n.s 99.0 Weakly correlated
201 L1ME5 2 n.s 99.0 Weakly correlated
202 L1MEh 2 n.s 99.0 Weakly correlated
203 L1MEj 2 n.s 99.0 Weakly correlated
204 L1P4 2 n.s 74.0 Weakly correlated
205 L1PB4 2 n.s 99.0 Weakly correlated
206 L2-3_Crp 2 n.s 431.0 Weakly correlated
207 LTR1 2 ** 43.0 Highly correlated
208 LTR105_Mam 2 * 99.0 Weakly correlated
209 LTR10B1 2 *** 28.9 Weakly correlated
210 LTR10B2 2 *** 28.9 Weakly correlated
211 LTR16 2 n.s 99.0 Weakly correlated
212 LTR16A1 2 n.s 99.0 Weakly correlated
213 LTR16B1 2 n.s 99.0 Weakly correlated
214 LTR18A 2 *** 43.0 Highly correlated
215 LTR1D 2 * 43.0 Highly correlated
216 LTR27E 2 ** 43.0 Highly correlated
217 LTR28 2 ** 43.0 Highly correlated
218 LTR28B 2 * 43.0 Highly correlated
219 LTR33C 2 * 99.0 Weakly correlated
220 LTR40c 2 * 99.0 Weakly correlated
221 LTR41B 2 * 99.0 Weakly correlated
222 LTR46 2 ** 43.0 Highly correlated
223 LTR5B 2 n.s 28.9 Weakly correlated
224 LTR5_Hs 2 n.s 0.0 Weakly correlated
225 LTR78B 2 n.s 99.0 Weakly correlated
226 LTR8 2 n.s 43.0 Highly correlated
227 LTR82B 2 n.s 99.0 Weakly correlated
228 LTR89 2 * 99.0 Weakly correlated
229 MER34A 2 n.s 99.0 Weakly correlated
230 MER34D 2 ** 74.0 Weakly correlated
231 MER4-int 2 n.s 74.0 Weakly correlated
232 MER4A1 2 n.s 74.0 Weakly correlated
233 MER4CL34 2 n.s 43.0 Highly correlated
234 MER50B 2 n.s 43.0 Highly correlated
235 MER66B 2 n.s 43.0 Highly correlated
236 MER68 2 n.s 99.0 Weakly correlated
237 MER77 2 n.s 99.0 Weakly correlated
238 MER89-int 2 n.s 99.0 Weakly correlated
239 MER90a 2 n.s 99.0 Weakly correlated
240 MER9a3 2 * 28.9 Weakly correlated
241 MLT1B-int 2 * 99.0 Weakly correlated
242 MLT1E 2 * 99.0 Weakly correlated
243 MLT1E3 2 n.s 99.0 Weakly correlated
244 MLT1F 2 n.s 99.0 Weakly correlated
245 MLT1F1 2 n.s 99.0 Weakly correlated
246 MLT1F2 2 n.s 99.0 Weakly correlated
247 MLT1G1 2 n.s 99.0 Weakly correlated
248 MLT1G3 2 n.s 99.0 Weakly correlated
249 MLT1J2 2 n.s 99.0 Weakly correlated
250 MLT1N2 2 n.s 99.0 Weakly correlated
251 MLT2A1 2 n.s 74.0 Weakly correlated
252 MLT2F 2 n.s 99.0 Weakly correlated
253 MSTA-int 2 n.s 43.0 Highly correlated
254 MSTB1 2 n.s 74.0 Weakly correlated
255 MamSINE1 2 n.s 99.0 Weakly correlated
256 SVA_E 2 * 0.0 Weakly correlated
257 Alu 1 n.s 74.0 Weakly correlated
258 AluSq4 1 n.s 74.0 Weakly correlated
259 AluYc3 1 n.s 74.0 Weakly correlated
260 AluYe5 1 n.s 74.0 Weakly correlated
261 AluYe6 1 ** 74.0 Weakly correlated
262 AluYh3 1 n.s 15.2 Weakly correlated
263 AluYh9 1 *** 15.2 Weakly correlated
264 AluYk4 1 n.s 15.2 Weakly correlated
265 AmnSINE1 1 n.s 319.0 Weakly correlated
266 CR1-8_Crp 1 **** 686.0 Weakly correlated
267 CR1_Mam 1 n.s 99.0 Weakly correlated
268 ERV3-16A3_LTR 1 n.s 99.0 Weakly correlated
269 FAM 1 n.s 87.0 Weakly correlated
270 FLAM_A 1 n.s 74.0 Weakly correlated
271 HAL1M8 1 n.s 99.0 Weakly correlated
272 HAL1b 1 n.s 99.0 Weakly correlated
273 HERV17-int 1 n.s 28.9 Weakly correlated
274 HERV30-int 1 * 28.9 Weakly correlated
275 HERV35I-int 1 n.s 43.0 Highly correlated
276 HERV9-int 1 n.s 28.9 Weakly correlated
277 HERV9N-int 1 n.s 19.6 Weakly correlated
278 HERVE_a-int 1 n.s 28.9 Weakly correlated
279 HERVFH19-int 1 * 43.0 Highly correlated
280 HERVIP10B3-int 1 n.s 28.9 Weakly correlated
281 HERVL40-int 1 n.s 99.0 Weakly correlated
282 HUERS-P2-int 1 n.s 43.0 Highly correlated
283 L1M3f 1 n.s 87.0 Weakly correlated
284 L1M4a1 1 n.s 99.0 Weakly correlated
285 L1M4a2 1 n.s 99.0 Weakly correlated
286 L1M8 1 n.s 99.0 Weakly correlated
287 L1MA2 1 n.s 74.0 Weakly correlated
288 L1MA7 1 n.s 87.0 Weakly correlated
289 L1MB1 1 n.s 99.0 Weakly correlated
290 L1MDb 1 n.s 99.0 Weakly correlated
291 L1ME3 1 n.s 99.0 Weakly correlated
292 L1ME3Cz 1 n.s 99.0 Weakly correlated
293 L1MEa 1 n.s 99.0 Weakly correlated
294 L1MEi 1 n.s 99.0 Weakly correlated
295 L1P3b 1 ** 43.0 Highly correlated
296 L1P4a 1 n.s 74.0 Weakly correlated
297 L1P5 1 * 74.0 Weakly correlated
298 L1PA14 1 n.s 74.0 Weakly correlated
299 L1PA15-16 1 n.s 74.0 Weakly correlated
300 L1PA8A 1 n.s 74.0 Weakly correlated
301 L1PB 1 n.s 74.0 Weakly correlated
302 L1PB3 1 n.s 74.0 Weakly correlated
303 L1PBa 1 n.s 74.0 Weakly correlated
304 L3b 1 n.s 99.0 Weakly correlated
305 L4_A_Mam 1 n.s 99.0 Weakly correlated
306 LFSINE_Vert 1 n.s 319.0 Weakly correlated
307 LOR1-int 1 n.s 74.0 Weakly correlated
308 LTR103_Mam 1 * 99.0 Weakly correlated
309 LTR10G 1 ** 28.9 Weakly correlated
310 LTR12 1 n.s 28.9 Weakly correlated
311 LTR12B 1 n.s 28.9 Weakly correlated
312 LTR14A 1 ** 28.9 Weakly correlated
313 LTR16D 1 n.s 99.0 Weakly correlated
314 LTR16E1 1 n.s 99.0 Weakly correlated
315 LTR16E2 1 n.s 99.0 Weakly correlated
316 LTR19C 1 * 43.0 Highly correlated
317 LTR1B 1 n.s 43.0 Highly correlated
318 LTR1F1 1 n.s 43.0 Highly correlated
319 LTR23 1 n.s 74.0 Weakly correlated
320 LTR26E 1 ** 74.0 Weakly correlated
321 LTR27D 1 * 43.0 Highly correlated
322 LTR32 1 n.s 43.0 Highly correlated
323 LTR33A 1 n.s 99.0 Weakly correlated
324 LTR33A_ 1 n.s 99.0 Weakly correlated
325 LTR33B 1 n.s 99.0 Weakly correlated
326 LTR37-int 1 n.s 99.0 Weakly correlated
327 LTR37A 1 n.s 99.0 Weakly correlated
328 LTR40a 1 n.s 99.0 Weakly correlated
329 LTR41 1 n.s 99.0 Weakly correlated
330 LTR41C 1 n.s 99.0 Weakly correlated
331 LTR45B 1 n.s 74.0 Weakly correlated
332 LTR46-int 1 * 74.0 Weakly correlated
333 LTR48 1 n.s 74.0 Weakly correlated
334 LTR48B 1 n.s 74.0 Weakly correlated
335 LTR53-int 1 n.s 99.0 Weakly correlated
336 LTR55 1 n.s 99.0 Weakly correlated
337 LTR56 1 n.s 74.0 Weakly correlated
338 LTR60B 1 * 74.0 Weakly correlated
339 LTR62 1 n.s 74.0 Weakly correlated
340 LTR65 1 * 99.0 Weakly correlated
341 LTR72 1 * 74.0 Weakly correlated
342 LTR73 1 * 99.0 Weakly correlated
343 LTR77 1 ** 94.0 Weakly correlated
344 LTR7B 1 n.s 28.9 Weakly correlated
345 LTR81C 1 n.s 99.0 Weakly correlated
346 LTR84b 1 n.s 99.0 Weakly correlated
347 LTR85b 1 n.s 99.0 Weakly correlated
348 LTR85c 1 n.s 99.0 Weakly correlated
349 LTR8A 1 n.s 43.0 Highly correlated
350 LTR8B 1 n.s 43.0 Highly correlated
351 LTR9 1 n.s 43.0 Highly correlated
352 LTR9D 1 n.s 43.0 Highly correlated
353 MER110A 1 n.s 99.0 Weakly correlated
354 MER11C 1 n.s 19.6 Weakly correlated
355 MER21-int 1 n.s 99.0 Weakly correlated
356 MER34-int 1 n.s 99.0 Weakly correlated
357 MER34B 1 n.s 87.0 Weakly correlated
358 MER34C2 1 n.s 74.0 Weakly correlated
359 MER41-int 1 n.s 74.0 Weakly correlated
360 MER41A 1 n.s 74.0 Weakly correlated
361 MER41B 1 n.s 74.0 Weakly correlated
362 MER41C 1 n.s 74.0 Weakly correlated
363 MER41E 1 n.s 74.0 Weakly correlated
364 MER4B 1 n.s 74.0 Weakly correlated
365 MER57-int 1 n.s 87.0 Weakly correlated
366 MER57A-int 1 n.s 43.0 Highly correlated
367 MER57A1 1 n.s 43.0 Highly correlated
368 MER61A 1 n.s 43.0 Highly correlated
369 MER61B 1 n.s 43.0 Highly correlated
370 MER61C 1 * 43.0 Highly correlated
371 MER65A 1 n.s 74.0 Weakly correlated
372 MER74C 1 * 99.0 Weakly correlated
373 MER76 1 n.s 99.0 Weakly correlated
374 MER83 1 n.s 43.0 Highly correlated
375 MER84 1 * 43.0 Highly correlated
376 MER88 1 ** 99.0 Weakly correlated
377 MLT-int 1 n.s 99.0 Weakly correlated
378 MLT1A-int 1 n.s 99.0 Weakly correlated
379 MLT1E2 1 n.s 99.0 Weakly correlated
380 MLT1H2 1 n.s 99.0 Weakly correlated
381 MLT1J1-int 1 n.s 99.0 Weakly correlated
382 MLT1M 1 n.s 99.0 Weakly correlated
383 MLT2A2 1 n.s 74.0 Weakly correlated
384 MLT2B1 1 n.s 99.0 Weakly correlated
385 MLT2B2 1 n.s 99.0 Weakly correlated
386 MLT2B3 1 n.s 99.0 Weakly correlated
387 MLT2C1 1 n.s 99.0 Weakly correlated
388 MLT2E 1 * 99.0 Weakly correlated
389 MSTB1-int 1 n.s 74.0 Weakly correlated
390 MSTD-int 1 n.s 74.0 Weakly correlated
391 MamGypLTR1c 1 n.s 99.0 Weakly correlated
392 MamGypLTR2c 1 n.s 99.0 Weakly correlated
393 MamRep1527 1 n.s 99.0 Weakly correlated
394 PABL_B 1 n.s 43.0 Highly correlated
395 PABL_B-int 1 n.s 74.0 Weakly correlated
396 Plat_L3 1 n.s 99.0 Weakly correlated
397 PrimLTR79 1 ** 74.0 Weakly correlated
398 THE1-int 1 * 43.0 Highly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1PA3 249 **** 19.6 Weakly correlated
2 L1PA7 198 **** 74.0 Weakly correlated
3 L1PA2 161 **** 15.2 Weakly correlated
4 L1PA6 155 **** 28.9 Weakly correlated
5 L1PA5 145 **** 19.6 Weakly correlated
6 L1PA4 133 **** 19.6 Weakly correlated
7 SVA_B 93 **** 15.2 Weakly correlated
8 SVA_C 57 **** 15.2 Weakly correlated
9 L1P3 56 **** 74.0 Weakly correlated
10 L1P2 53 **** 28.9 Weakly correlated
11 L1PA8 35 *** 74.0 Weakly correlated
12 L1P1 33 **** 19.6 Weakly correlated
13 AluJb 29 n.s 74.0 Weakly correlated
14 L1HS 26 **** 8.6 Weakly correlated
15 MSTA 25 * 43.0 Highly correlated
16 AluSx 24 n.s 74.0 Weakly correlated
17 L2a 22 n.s 99.0 Weakly correlated
18 HUERS-P3-int 21 **** 43.0 Highly correlated
19 HUERS-P3b-int 21 **** 43.0 Highly correlated
20 AluSz 17 n.s 74.0 Weakly correlated
21 L2b 15 n.s 99.0 Weakly correlated
22 L2c 15 n.s 99.0 Weakly correlated
23 MIR 15 n.s 99.0 Weakly correlated
24 AluJr 14 n.s 74.0 Weakly correlated
25 MLT1C 14 n.s 94.0 Weakly correlated
26 THE1D 14 n.s 43.0 Highly correlated
27 AluSx1 13 n.s 74.0 Weakly correlated
28 L2 13 n.s 99.0 Weakly correlated
29 SVA_D 13 *** 15.2 Weakly correlated
30 L1PA10 12 n.s 74.0 Weakly correlated
31 MER21B 12 **** 99.0 Weakly correlated
32 MIRb 12 n.s 99.0 Weakly correlated
33 THE1B-int 11 n.s 43.0 Highly correlated
34 AluY 10 n.s 74.0 Weakly correlated
35 MIR3 10 n.s 99.0 Weakly correlated
36 SVA_A 10 **** 19.6 Weakly correlated
37 L1MC1 9 n.s 99.0 Weakly correlated
38 LTR12C 9 n.s 19.6 Weakly correlated
39 MER21C 9 n.s 99.0 Weakly correlated
40 AluJo 8 n.s 74.0 Weakly correlated
41 AluSq2 8 n.s 74.0 Weakly correlated
42 LTR27B 8 **** 43.0 Highly correlated
43 MLT1A0 8 n.s 99.0 Weakly correlated
44 MLT1B 8 n.s 99.0 Weakly correlated
45 MLT1J 8 n.s 99.0 Weakly correlated
46 MLT1K 8 n.s 99.0 Weakly correlated
47 THE1B 8 n.s 43.0 Highly correlated
48 L1M5 7 n.s 99.0 Weakly correlated
49 LTR17 7 **** 28.9 Weakly correlated
50 MER50 7 * 43.0 Highly correlated
51 MIRc 7 n.s 99.0 Weakly correlated
52 MLT1A 7 n.s 99.0 Weakly correlated
53 THE1D-int 7 n.s 28.9 Weakly correlated
54 AluSx4 6 n.s 74.0 Weakly correlated
55 AluSz6 6 n.s 74.0 Weakly correlated
56 HERVL18-int 6 **** 43.0 Highly correlated
57 HERVS71-int 6 *** 28.9 Weakly correlated
58 L1ME1 6 n.s 99.0 Weakly correlated
59 MLT1D 6 n.s 99.0 Weakly correlated
60 MLT1E1A 6 * 99.0 Weakly correlated
61 THE1C 6 n.s 43.0 Highly correlated
62 L1M4 5 n.s 99.0 Weakly correlated
63 L1MC2 5 n.s 99.0 Weakly correlated
64 L1PA11 5 n.s 74.0 Weakly correlated
65 L1PA16 5 n.s 74.0 Weakly correlated
66 L3 5 n.s 99.0 Weakly correlated
67 LTR25-int 5 ** 43.0 Highly correlated
68 LTR2752 5 **** 43.0 Highly correlated
69 MLT1I 5 n.s 99.0 Weakly correlated
70 THE1A-int 5 n.s 43.0 Highly correlated
71 AluSc 4 n.s 74.0 Weakly correlated
72 AluSg 4 n.s 74.0 Weakly correlated
73 ERV3-16A3_I-int 4 n.s 99.0 Weakly correlated
74 HERV4_I-int 4 *** 43.0 Highly correlated
75 L1M4b 4 n.s 99.0 Weakly correlated
76 L1MD2 4 n.s 99.0 Weakly correlated
77 L1PA13 4 n.s 74.0 Weakly correlated
78 L1PA17 4 n.s 74.0 Weakly correlated
79 LTR27C 4 **** 43.0 Highly correlated
80 MER50-int 4 ** 43.0 Highly correlated
81 MLT1A1 4 n.s 87.0 Weakly correlated
82 MSTB 4 n.s 43.0 Highly correlated
83 AluSc8 3 n.s 74.0 Weakly correlated
84 ERVL-E-int 3 n.s 99.0 Weakly correlated
85 HAL1 3 n.s 99.0 Weakly correlated
86 HERVH-int 3 n.s 28.9 Weakly correlated
87 L1MC3 3 n.s 99.0 Weakly correlated
88 L1MCa 3 n.s 99.0 Weakly correlated
89 L1MDa 3 n.s 99.0 Weakly correlated
90 L1ME2 3 n.s 99.0 Weakly correlated
91 L1MEc 3 n.s 99.0 Weakly correlated
92 L1MEd 3 n.s 99.0 Weakly correlated
93 L1PB1 3 n.s 74.0 Weakly correlated
94 L1PREC2 3 n.s 43.0 Highly correlated
95 LTR16C 3 n.s 99.0 Weakly correlated
96 LTR1A1 3 ** 43.0 Highly correlated
97 LTR28C 3 ** 43.0 Highly correlated
98 LTR40b 3 * 99.0 Weakly correlated
99 LTR78 3 n.s 99.0 Weakly correlated
100 LTR79 3 n.s 99.0 Weakly correlated
101 MER4B-int 3 n.s 99.0 Weakly correlated
102 MER51-int 3 * 43.0 Highly correlated
103 MER51B 3 ** 43.0 Highly correlated
104 MER52A 3 n.s 74.0 Weakly correlated
105 MER61-int 3 n.s 43.0 Highly correlated
106 MER74A 3 n.s 99.0 Weakly correlated
107 MLT1G 3 n.s 99.0 Weakly correlated
108 MSTD 3 n.s 74.0 Weakly correlated
109 SVA_F 3 n.s 0.0 Weakly correlated
110 THE1A 3 n.s 43.0 Highly correlated
111 AluSg7 2 n.s 74.0 Weakly correlated
112 AluSp 2 n.s 74.0 Weakly correlated
113 HERVFH21-int 2 ** 28.9 Weakly correlated
114 HERVK22-int 2 n.s 43.0 Highly correlated
115 L1M3 2 n.s 99.0 Weakly correlated
116 L1MA3 2 n.s 74.0 Weakly correlated
117 L1MA4 2 n.s 87.0 Weakly correlated
118 L1MA9 2 n.s 99.0 Weakly correlated
119 L1MB3 2 n.s 99.0 Weakly correlated
120 L1MB7 2 n.s 99.0 Weakly correlated
121 L1MC4 2 n.s 99.0 Weakly correlated
122 L1MCc 2 n.s 99.0 Weakly correlated
123 L1MD1 2 n.s 99.0 Weakly correlated
124 L1ME3A 2 n.s 99.0 Weakly correlated
125 L1ME4a 2 n.s 99.0 Weakly correlated
126 L1MEg 2 n.s 99.0 Weakly correlated
127 L1PA15 2 n.s 74.0 Weakly correlated
128 LTR105_Mam 2 * 99.0 Weakly correlated
129 LTR16 2 n.s 99.0 Weakly correlated
130 LTR1A2 2 n.s 43.0 Highly correlated
131 LTR28 2 ** 43.0 Highly correlated
132 LTR50 2 n.s 99.0 Weakly correlated
133 LTR5B 2 n.s 28.9 Weakly correlated
134 LTR89 2 * 99.0 Weakly correlated
135 LTR9B 2 * 43.0 Highly correlated
136 MER21A 2 n.s 74.0 Weakly correlated
137 MER34D 2 ** 74.0 Weakly correlated
138 MER39 2 n.s 74.0 Weakly correlated
139 MER4CL34 2 n.s 43.0 Highly correlated
140 MER50B 2 n.s 43.0 Highly correlated
141 MER51A 2 n.s 43.0 Highly correlated
142 MER52D 2 n.s 74.0 Weakly correlated
143 MER66B 2 n.s 43.0 Highly correlated
144 MER89 2 n.s 99.0 Weakly correlated
145 MER90a 2 n.s 99.0 Weakly correlated
146 MER9a3 2 * 28.9 Weakly correlated
147 MIR1_Amn 2 n.s 319.0 Weakly correlated
148 MLT1A0-int 2 n.s 99.0 Weakly correlated
149 MLT1E1 2 n.s 99.0 Weakly correlated
150 MLT1F 2 n.s 99.0 Weakly correlated
151 MLT1F2 2 n.s 99.0 Weakly correlated
152 MLT1J1 2 n.s 99.0 Weakly correlated
153 MLT1J2 2 n.s 99.0 Weakly correlated
154 MLT2F 2 n.s 99.0 Weakly correlated
155 MSTA-int 2 n.s 43.0 Highly correlated
156 MamRep605 2 n.s 99.0 Weakly correlated
157 SVA_E 2 * 0.0 Weakly correlated
158 THE1C-int 2 n.s 43.0 Highly correlated
159 AluSx3 2 n.s 74.0 Weakly correlated
160 AluJr4 1 n.s 74.0 Weakly correlated
161 AluSg4 1 n.s 74.0 Weakly correlated
162 AluSq 1 n.s 74.0 Weakly correlated
163 AluYh3 1 n.s 15.2 Weakly correlated
164 ERV3-16A3_LTR 1 n.s 99.0 Weakly correlated
165 FAM 1 n.s 87.0 Weakly correlated
166 FLAM_A 1 n.s 74.0 Weakly correlated
167 FLAM_C 1 n.s 74.0 Weakly correlated
168 HAL1ME 1 n.s 99.0 Weakly correlated
169 HERV16-int 1 n.s 99.0 Weakly correlated
170 HERV30-int 1 * 28.9 Weakly correlated
171 HERVFH19-int 1 * 43.0 Highly correlated
172 HERVK13-int 1 * 19.6 Weakly correlated
173 HERVL40-int 1 n.s 99.0 Weakly correlated
174 L1M1 1 n.s 74.0 Weakly correlated
175 L1M2c 1 n.s 87.0 Weakly correlated
176 L1M4c 1 n.s 99.0 Weakly correlated
177 L1MA8 1 n.s 87.0 Weakly correlated
178 L1MB2 1 n.s 99.0 Weakly correlated
179 L1MC 1 n.s 99.0 Weakly correlated
180 L1MC4a 1 n.s 99.0 Weakly correlated
181 L1MC5a 1 n.s 99.0 Weakly correlated
182 L1MD3 1 n.s 99.0 Weakly correlated
183 L1ME3F 1 n.s 99.0 Weakly correlated
184 L1ME3G 1 n.s 99.0 Weakly correlated
185 L1ME4c 1 n.s 99.0 Weakly correlated
186 L1MEf 1 n.s 99.0 Weakly correlated
187 L1P3b 1 ** 43.0 Highly correlated
188 L1PA12 1 n.s 74.0 Weakly correlated
189 L1PA15-16 1 n.s 74.0 Weakly correlated
190 L1PB4 1 n.s 99.0 Weakly correlated
191 LOR1-int 1 n.s 74.0 Weakly correlated
192 LTR104_Mam 1 n.s 99.0 Weakly correlated
193 LTR10B2 1 ** 28.9 Weakly correlated
194 LTR10F 1 n.s 28.9 Weakly correlated
195 LTR12 1 n.s 28.9 Weakly correlated
196 LTR12D 1 n.s 19.6 Weakly correlated
197 LTR16A1 1 n.s 99.0 Weakly correlated
198 LTR16B1 1 n.s 99.0 Weakly correlated
199 LTR16D 1 n.s 99.0 Weakly correlated
200 LTR16E1 1 n.s 99.0 Weakly correlated
201 LTR19C 1 * 43.0 Highly correlated
202 LTR1D 1 n.s 43.0 Highly correlated
203 LTR1F1 1 n.s 43.0 Highly correlated
204 LTR23 1 n.s 74.0 Weakly correlated
205 LTR27D 1 * 43.0 Highly correlated
206 LTR27E 1 n.s 43.0 Highly correlated
207 LTR28B 1 n.s 43.0 Highly correlated
208 LTR33 1 n.s 99.0 Weakly correlated
209 LTR33A 1 n.s 99.0 Weakly correlated
210 LTR33C 1 n.s 99.0 Weakly correlated
211 LTR40a 1 n.s 99.0 Weakly correlated
212 LTR40c 1 n.s 99.0 Weakly correlated
213 LTR41B 1 n.s 99.0 Weakly correlated
214 LTR46-int 1 * 74.0 Weakly correlated
215 LTR48B 1 n.s 74.0 Weakly correlated
216 LTR55 1 n.s 99.0 Weakly correlated
217 LTR62 1 n.s 74.0 Weakly correlated
218 LTR65 1 * 99.0 Weakly correlated
219 LTR67B 1 n.s 99.0 Weakly correlated
220 LTR72 1 * 74.0 Weakly correlated
221 LTR78B 1 n.s 99.0 Weakly correlated
222 LTR82B 1 n.s 99.0 Weakly correlated
223 LTR9 1 n.s 43.0 Highly correlated
224 LTR9D 1 n.s 43.0 Highly correlated
225 MER110A 1 n.s 99.0 Weakly correlated
226 MER11D 1 n.s 19.6 Weakly correlated
227 MER21-int 1 n.s 99.0 Weakly correlated
228 MER34B 1 n.s 87.0 Weakly correlated
229 MER39B 1 n.s 74.0 Weakly correlated
230 MER41-int 1 n.s 74.0 Weakly correlated
231 MER41C 1 n.s 74.0 Weakly correlated
232 MER4A1 1 n.s 74.0 Weakly correlated
233 MER57-int 1 n.s 87.0 Weakly correlated
234 MER61B 1 n.s 43.0 Highly correlated
235 MER61C 1 * 43.0 Highly correlated
236 MER68 1 n.s 99.0 Weakly correlated
237 MER74C 1 * 99.0 Weakly correlated
238 MER76 1 n.s 99.0 Weakly correlated
239 MLT1B-int 1 n.s 99.0 Weakly correlated
240 MLT1E 1 n.s 99.0 Weakly correlated
241 MLT1E2 1 n.s 99.0 Weakly correlated
242 MLT1E3 1 n.s 99.0 Weakly correlated
243 MLT1G1 1 n.s 99.0 Weakly correlated
244 MLT1G3 1 n.s 99.0 Weakly correlated
245 MLT1H 1 n.s 99.0 Weakly correlated
246 MLT1H2 1 n.s 99.0 Weakly correlated
247 MLT1L 1 n.s 99.0 Weakly correlated
248 MLT1N2 1 n.s 99.0 Weakly correlated
249 MLT1O 1 n.s 99.0 Weakly correlated
250 MLT2A1 1 n.s 74.0 Weakly correlated
251 MLT2B1 1 n.s 99.0 Weakly correlated
252 MLT2E 1 * 99.0 Weakly correlated
253 MSTC 1 n.s 74.0 Weakly correlated
254 MamGypLTR1c 1 n.s 99.0 Weakly correlated
255 MamRTE1 1 n.s 99.0 Weakly correlated
256 MamSINE1 1 n.s 99.0 Weakly correlated
257 PABL_B 1 n.s 43.0 Highly correlated
258 PABL_B-int 1 n.s 74.0 Weakly correlated
259 HERVK-int 1 n.s 28.9 Weakly correlated
260 L1P5 1 * 74.0 Weakly correlated
261 L1PBa1 1 n.s 74.0 Weakly correlated
262 LTR41 1 n.s 99.0 Weakly correlated
263 L1MA7 1 n.s 87.0 Weakly correlated
264 L1P4a 1 n.s 74.0 Weakly correlated
265 L1PA8A 1 n.s 74.0 Weakly correlated
266 MLT1A-int 1 n.s 99.0 Weakly correlated
267 L1MEi 1 n.s 99.0 Weakly correlated
268 LTR13 1 n.s 19.6 Weakly correlated
269 MER4B 1 n.s 74.0 Weakly correlated
270 L1M3b 1 n.s 99.0 Weakly correlated
271 L1MC5 1 n.s 99.0 Weakly correlated
272 LTR53-int 1 n.s 99.0 Weakly correlated
273 L1PB3 1 n.s 74.0 Weakly correlated
274 MER4-int 1 n.s 74.0 Weakly correlated
275 MLT2B3 1 n.s 99.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 HERVL18-INT 43.0 Highly correlated
2 HERVS71-INT 28.9 Weakly correlated
3 HUERS-P3B-INT 43.0 Highly correlated
4 L1HS 8.6 Weakly correlated
5 L1P1 19.6 Weakly correlated
6 L1P2 28.9 Weakly correlated
7 L1P3 74.0 Weakly correlated
8 L1PA2 15.2 Weakly correlated
9 L1PA7 74.0 Weakly correlated
10 L2 99.0 Weakly correlated
11 LTR12C 19.6 Weakly correlated
12 MLT1E1A 99.0 Weakly correlated
13 MLT1J 99.0 Weakly correlated
14 SVA_A 19.6 Weakly correlated
15 SVA_C 15.2 Weakly correlated
16 SVA_D 15.2 Weakly correlated
17 THE1C 43.0 Highly correlated
18 THE1D 43.0 Highly correlated
19 THE1D-INT 28.9 Weakly correlated