ZRdb KZFP & Repeats
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Human_ZNF140

  • Protein
    Zinc finger protein 140
  • Length
    457
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    99.0 Mya
  • Time of Changing in binding specificity
    99.0 Mya
  • Uniprot_ID
    P52738
  • NCBI_ID
    7699
Sequence:
MSQGSVTFRDVAIDFSQEEWKWLQPAQRDLYRCVMLENYGHLVSLGLSISKPDVVSLLEQGKEPWLGKREVKRDLFSVSESSGEIKDFSPKNVIYDDSSQYLIMERILSQGPVYSSFKGGWKCKDHTEMLQENQGCIRKVTVSHQEALAQHMNISTVERPYGCHECGKTFGRRFSLVLHQRTHTGEKPYACKECGKTFSQISNLVKHQMIHTGKKPHECKDCNKTFSYLSFLIEHQRTHTGEKPYECTECGKAFSRASNLTRHQRIHIGKKQYICRKCGKAFSSGSELIRHQITHTGEKPYECIECGKAFRRFSHLTRHQSIHTTKTPYECNECRKAFRCHSFLIKHQRIHAGEKLYECDECGKVFTWHASLIQHTKSHTGEKPYACAECDKAFSRSFSLILHQRTHTGEKPYVCKVCNKSFSWSSNLAKHQRTHTLDNPYEYENSFNYHSFLTEHQ
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 6..77
2 C2h2 161..183
3 C2h2 189..211
4 C2h2 217..239
5 C2h2 245..267
6 C2h2 273..295
7 C2h2 301..323
8 C2h2 329..351
9 C2h2 357..379
10 C2h2 385..407
11 C2h2 413..435
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function DNA-binding transcription repressor activity, RNA polymerase II-specific
4 Molecular Function metal ion binding
5 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
6 Molecular Function sequence-specific DNA binding
7 Molecular Function sequence-specific double-stranded DNA binding
8 Biological Process negative regulation of transcription by RNA polymerase II
9 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1MB7 586 **** 99.0 Highly correlated
2 AluJb 528 **** 74.0 Weakly correlated
3 AluSx 436 **** 74.0 Weakly correlated
4 AluSx1 429 **** 74.0 Weakly correlated
5 AluY 429 **** 74.0 Weakly correlated
6 L1MB8 388 **** 99.0 Highly correlated
7 AluSz 378 **** 74.0 Weakly correlated
8 L1MB5 328 **** 99.0 Highly correlated
9 AluJo 239 **** 74.0 Weakly correlated
10 AluJr 235 **** 74.0 Weakly correlated
11 AluSq2 224 **** 74.0 Weakly correlated
12 L1MB4 199 **** 99.0 Highly correlated
13 L2a 198 n.s 99.0 Highly correlated
14 MIRb 195 **** 99.0 Highly correlated
15 AluSp 181 **** 74.0 Weakly correlated
16 AluSz6 177 **** 74.0 Weakly correlated
17 MIR 159 *** 99.0 Highly correlated
18 L1ME1 155 **** 99.0 Highly correlated
19 AluSg 154 **** 74.0 Weakly correlated
20 L1M4 139 **** 99.0 Highly correlated
21 AluSc 132 **** 74.0 Weakly correlated
22 L1ME3A 131 **** 99.0 Highly correlated
23 L2c 131 n.s 99.0 Highly correlated
24 L2b 108 *** 99.0 Highly correlated
25 L1M5 103 **** 99.0 Highly correlated
26 AluSx3 94 **** 74.0 Weakly correlated
27 L1ME2 78 **** 99.0 Highly correlated
28 AluSc8 77 **** 74.0 Weakly correlated
29 AluSq 74 **** 74.0 Weakly correlated
30 L2 73 n.s 99.0 Highly correlated
31 L1PB1 65 n.s 74.0 Weakly correlated
32 L1MB3 61 **** 99.0 Highly correlated
33 MIRc 61 n.s 99.0 Highly correlated
34 MIR3 60 ** 99.0 Highly correlated
35 L1ME3 54 **** 99.0 Highly correlated
36 L1MC4 50 * 99.0 Highly correlated
37 L1ME2z 50 **** 99.0 Highly correlated
38 L1MEd 48 ** 99.0 Highly correlated
39 AluJr4 47 **** 74.0 Weakly correlated
40 L1ME4a 45 * 99.0 Highly correlated
41 L1MEc 45 n.s 99.0 Highly correlated
42 AluSx4 43 **** 74.0 Weakly correlated
43 L1ME3B 40 **** 99.0 Highly correlated
44 AluSc5 35 **** 74.0 Weakly correlated
45 AluYj4 35 **** 0.0 Weakly correlated
46 L3 35 n.s 99.0 Highly correlated
47 LTR8 35 **** 43.0 Weakly correlated
48 FLAM_C 31 **** 74.0 Weakly correlated
49 L1ME3Cz 30 *** 99.0 Highly correlated
50 L1ME3D 30 **** 99.0 Highly correlated
51 HAL1 29 n.s 99.0 Highly correlated
52 L1MEg 27 n.s 99.0 Highly correlated
53 AluSg7 26 **** 74.0 Weakly correlated
54 L1PA16 26 n.s 74.0 Weakly correlated
55 MLT1B 25 n.s 99.0 Highly correlated
56 L1ME3G 24 n.s 99.0 Highly correlated
57 L1ME4b 24 n.s 99.0 Highly correlated
58 L1MEf 23 n.s 99.0 Highly correlated
59 MLT1C 23 n.s 94.0 Weakly correlated
60 MLT1D 23 n.s 99.0 Highly correlated
61 AluSg4 22 **** 74.0 Weakly correlated
62 L1PA5 22 n.s 19.6 Weakly correlated
63 AluYh3 21 **** 15.2 Weakly correlated
64 FLAM_A 21 **** 74.0 Weakly correlated
65 L1MA4 21 n.s 87.0 Weakly correlated
66 L1ME5 21 **** 99.0 Highly correlated
67 L1MA3 20 n.s 74.0 Weakly correlated
68 L1MA9 20 n.s 99.0 Highly correlated
69 Alu 19 **** 74.0 Weakly correlated
70 L1MC5 19 n.s 99.0 Highly correlated
71 AluYm1 18 **** 19.6 Weakly correlated
72 L1MC5a 18 n.s 99.0 Highly correlated
73 L1ME3F 18 **** 99.0 Highly correlated
74 LTR8B 18 **** 43.0 Weakly correlated
75 MLT1I 18 ** 99.0 Highly correlated
76 FRAM 17 **** 74.0 Weakly correlated
77 L1M3 17 * 99.0 Highly correlated
78 L1MB2 17 n.s 99.0 Highly correlated
79 L1MD2 17 n.s 99.0 Highly correlated
80 THE1B 17 n.s 43.0 Weakly correlated
81 L1M2 16 n.s 99.0 Highly correlated
82 L1ME3C 16 **** 99.0 Highly correlated
83 L1PA2 16 n.s 15.2 Weakly correlated
84 MLT1K 16 n.s 99.0 Highly correlated
85 SVA_D 16 ** 15.2 Weakly correlated
86 L1MA2 15 n.s 74.0 Weakly correlated
87 MER4-int 15 ** 74.0 Weakly correlated
88 L1M1 14 n.s 74.0 Weakly correlated
89 L1MA8 14 n.s 87.0 Weakly correlated
90 LTR10F 14 **** 28.9 Weakly correlated
91 MLT1A0 14 n.s 99.0 Highly correlated
92 MLT1J 14 n.s 99.0 Highly correlated
93 AluYc 13 *** 74.0 Weakly correlated
94 L1ME3E 13 * 99.0 Highly correlated
95 L1PA3 13 n.s 19.6 Weakly correlated
96 L1MC4a 12 n.s 99.0 Highly correlated
97 L1MD1 12 n.s 99.0 Highly correlated
98 L4_A_Mam 12 * 99.0 Highly correlated
99 LTR10A 12 **** 28.9 Weakly correlated
100 MSTA 12 n.s 43.0 Weakly correlated
101 PRIMA4-int 12 **** 74.0 Weakly correlated
102 L1MA1 11 n.s 74.0 Weakly correlated
103 L1MC1 11 n.s 99.0 Highly correlated
104 L1MDa 11 n.s 99.0 Highly correlated
105 L1P3 11 n.s 74.0 Weakly correlated
106 L1PBa 11 n.s 74.0 Weakly correlated
107 LTR26 11 **** 74.0 Weakly correlated
108 MLT1H 11 n.s 99.0 Highly correlated
109 L1MA4A 10 n.s 87.0 Weakly correlated
110 L1MA5 10 n.s 87.0 Weakly correlated
111 L1MD3 10 n.s 99.0 Highly correlated
112 LTR48 10 **** 74.0 Weakly correlated
113 MLT1A 10 n.s 99.0 Highly correlated
114 MLT1L 10 n.s 99.0 Highly correlated
115 AluYa5 9 * 15.2 Weakly correlated
116 HERVK-int 9 *** 28.9 Weakly correlated
117 L1MB1 9 n.s 99.0 Highly correlated
118 L1MC3 9 n.s 99.0 Highly correlated
119 L1MCa 9 n.s 99.0 Highly correlated
120 L1PA10 9 n.s 74.0 Weakly correlated
121 L1PA4 9 n.s 19.6 Weakly correlated
122 LTR16A 9 * 99.0 Highly correlated
123 MER21C 9 n.s 99.0 Highly correlated
124 MER41-int 9 * 74.0 Weakly correlated
125 MIR1_Amn 9 * 319.0 Weakly correlated
126 MLT1E2 9 n.s 99.0 Highly correlated
127 THE1C 9 n.s 43.0 Weakly correlated
128 HAL1ME 8 n.s 99.0 Highly correlated
129 L1M6 8 n.s 99.0 Highly correlated
130 L1MA7 8 n.s 87.0 Weakly correlated
131 L1ME4c 8 n.s 99.0 Highly correlated
132 L1PA13 8 n.s 74.0 Weakly correlated
133 L1PA15 8 n.s 74.0 Weakly correlated
134 L1PA7 8 n.s 74.0 Weakly correlated
135 L1PB2 8 n.s 74.0 Weakly correlated
136 LTR16C 8 n.s 99.0 Highly correlated
137 LTR79 8 ** 99.0 Highly correlated
138 LTR8A 8 ** 43.0 Weakly correlated
139 MER68 8 ** 99.0 Highly correlated
140 MLT1F 8 n.s 99.0 Highly correlated
141 MLT1F2 8 n.s 99.0 Highly correlated
142 MLT2A2 8 n.s 74.0 Weakly correlated
143 MSTB1 8 n.s 74.0 Weakly correlated
144 MSTB2 8 *** 74.0 Weakly correlated
145 MamRep605 8 * 99.0 Highly correlated
146 SVA_A 8 *** 19.6 Weakly correlated
147 AluYe5 7 *** 74.0 Weakly correlated
148 ERV3-16A3_I-int 7 n.s 99.0 Highly correlated
149 L1MCc 7 n.s 99.0 Highly correlated
150 L1MEi 7 n.s 99.0 Highly correlated
151 L1P4 7 n.s 74.0 Weakly correlated
152 L1PA17 7 n.s 74.0 Weakly correlated
153 L1PA8 7 n.s 74.0 Weakly correlated
154 L1PB3 7 n.s 74.0 Weakly correlated
155 LTR10E 7 **** 28.9 Weakly correlated
156 LTR37A 7 *** 99.0 Highly correlated
157 MER52A 7 n.s 74.0 Weakly correlated
158 MLT1G 7 * 99.0 Highly correlated
159 MLT2B1 7 n.s 99.0 Highly correlated
160 MamRTE1 7 n.s 99.0 Highly correlated
161 THE1D 7 n.s 43.0 Weakly correlated
162 AluSq4 6 ** 74.0 Weakly correlated
163 ERVL-B4-int 6 n.s 99.0 Highly correlated
164 HERVIP10FH-int 6 ** 28.9 Weakly correlated
165 L1M3f 6 * 87.0 Weakly correlated
166 L1M4b 6 n.s 99.0 Highly correlated
167 L1MA5A 6 n.s 87.0 Weakly correlated
168 L1MC 6 n.s 99.0 Highly correlated
169 L1MC2 6 n.s 99.0 Highly correlated
170 L1P1 6 n.s 19.6 Weakly correlated
171 LTR33 6 n.s 99.0 Highly correlated
172 LTR40a 6 * 99.0 Highly correlated
173 LTR41 6 ** 99.0 Highly correlated
174 LTR41C 6 **** 99.0 Highly correlated
175 LTR50 6 * 99.0 Highly correlated
176 LTR53 6 **** 99.0 Highly correlated
177 MER41A 6 n.s 74.0 Weakly correlated
178 MER50 6 n.s 43.0 Weakly correlated
179 MER50-int 6 ** 43.0 Weakly correlated
180 MER9a3 6 *** 28.9 Weakly correlated
181 MLT1A1 6 n.s 87.0 Weakly correlated
182 MLT1E1 6 *** 99.0 Highly correlated
183 MLT1J2 6 n.s 99.0 Highly correlated
184 MLT1N2 6 n.s 99.0 Highly correlated
185 MLT2D 6 n.s 99.0 Highly correlated
186 MSTB 6 n.s 43.0 Weakly correlated
187 ERV3-16A3_LTR 5 ** 99.0 Highly correlated
188 FAM 5 n.s 87.0 Weakly correlated
189 HAL1b 5 n.s 99.0 Highly correlated
190 HERVH48-int 5 *** 28.9 Weakly correlated
191 L1M4a1 5 n.s 99.0 Highly correlated
192 L1MA10 5 n.s 99.0 Highly correlated
193 L1MD 5 n.s 99.0 Highly correlated
194 L1PA11 5 n.s 74.0 Weakly correlated
195 L1PA8A 5 n.s 74.0 Weakly correlated
196 L1PBa1 5 n.s 74.0 Weakly correlated
197 LFSINE_Vert 5 ** 319.0 Weakly correlated
198 LTR18A 5 **** 43.0 Weakly correlated
199 LTR18B 5 **** 43.0 Weakly correlated
200 LTR54 5 ** 74.0 Weakly correlated
201 LTR91 5 **** 99.0 Highly correlated
202 MER39B 5 * 74.0 Weakly correlated
203 MER51A 5 ** 43.0 Weakly correlated
204 MLT1E1A 5 n.s 99.0 Highly correlated
205 MLT1F1 5 n.s 99.0 Highly correlated
206 MLT1H1 5 n.s 99.0 Highly correlated
207 MLT1H2 5 n.s 99.0 Highly correlated
208 MSTD 5 n.s 74.0 Weakly correlated
209 SVA_B 5 * 15.2 Weakly correlated
210 AluSq10 4 n.s 74.0 Weakly correlated
211 ERVL-E-int 4 n.s 99.0 Highly correlated
212 HERV17-int 4 n.s 28.9 Weakly correlated
213 L1M7 4 n.s 99.0 Highly correlated
214 L1MEb 4 n.s 99.0 Highly correlated
215 L1PA6 4 n.s 28.9 Weakly correlated
216 L1PB4 4 n.s 99.0 Highly correlated
217 L2-1_AMi 4 ** 319.0 Weakly correlated
218 LTR12C 4 n.s 19.6 Weakly correlated
219 LTR17 4 n.s 28.9 Weakly correlated
220 LTR3B 4 **** 28.9 Weakly correlated
221 LTR67B 4 n.s 99.0 Highly correlated
222 LTR85b 4 ** 99.0 Highly correlated
223 MER31B 4 n.s 99.0 Highly correlated
224 MER4D 4 n.s 74.0 Weakly correlated
225 MER61D 4 **** 43.0 Weakly correlated
226 MER77B 4 n.s 99.0 Highly correlated
227 MLT2C1 4 n.s 99.0 Highly correlated
228 PABL_A-int 4 * 74.0 Weakly correlated
229 SVA_C 4 * 15.2 Weakly correlated
230 SVA_E 4 * 0.0 Weakly correlated
231 AluYk2 3 * 19.6 Weakly correlated
232 AmnSINE1 3 * 319.0 Weakly correlated
233 HERV4_I-int 3 * 43.0 Weakly correlated
234 HERVH-int 3 n.s 28.9 Weakly correlated
235 HUERS-P1-int 3 n.s 43.0 Weakly correlated
236 L1MA6 3 n.s 87.0 Weakly correlated
237 L1MEg2 3 * 99.0 Highly correlated
238 L1MEh 3 n.s 99.0 Highly correlated
239 L1MEj 3 n.s 99.0 Highly correlated
240 L1P2 3 n.s 28.9 Weakly correlated
241 L1PB 3 n.s 74.0 Weakly correlated
242 L1PBb 3 n.s 74.0 Weakly correlated
243 L1PREC2 3 n.s 43.0 Weakly correlated
244 L4_C_Mam 3 n.s 99.0 Highly correlated
245 LOR1-int 3 n.s 74.0 Weakly correlated
246 LTR13 3 n.s 19.6 Weakly correlated
247 LTR16B2 3 n.s 99.0 Highly correlated
248 LTR16E1 3 n.s 99.0 Highly correlated
249 LTR2 3 n.s 28.9 Weakly correlated
250 LTR23 3 ** 74.0 Weakly correlated
251 LTR26C 3 ** 0.0 Weakly correlated
252 LTR33A 3 n.s 99.0 Highly correlated
253 LTR37-int 3 n.s 99.0 Highly correlated
254 LTR3B_ 3 *** 28.9 Weakly correlated
255 LTR40c 3 * 99.0 Highly correlated
256 LTR41B 3 * 99.0 Highly correlated
257 LTR46-int 3 ** 74.0 Weakly correlated
258 LTR49 3 n.s 74.0 Weakly correlated
259 LTR49-int 3 n.s 74.0 Weakly correlated
260 LTR5B 3 n.s 28.9 Weakly correlated
261 LTR78B 3 n.s 99.0 Highly correlated
262 LTR82B 3 n.s 99.0 Highly correlated
263 MER101 3 ** 74.0 Weakly correlated
264 MER34D 3 *** 74.0 Weakly correlated
265 MER4A 3 n.s 74.0 Weakly correlated
266 MER4B 3 n.s 74.0 Weakly correlated
267 MER4CL34 3 n.s 43.0 Weakly correlated
268 MER51B 3 * 43.0 Weakly correlated
269 MER57E3 3 *** 74.0 Weakly correlated
270 MLT1E3 3 n.s 99.0 Highly correlated
271 MLT1G1 3 n.s 99.0 Highly correlated
272 MLT2B2 3 n.s 99.0 Highly correlated
273 MLT2B3 3 n.s 99.0 Highly correlated
274 MLT2C2 3 n.s 99.0 Highly correlated
275 MLT2F 3 n.s 99.0 Highly correlated
276 MSTA-int 3 n.s 43.0 Weakly correlated
277 MamSINE1 3 n.s 99.0 Highly correlated
278 THE1A-int 3 n.s 43.0 Weakly correlated
279 THE1B-int 3 n.s 43.0 Weakly correlated
280 AluYb8 2 n.s 15.2 Weakly correlated
281 AluYf1 2 n.s 19.6 Weakly correlated
282 AluYg6 2 * 15.2 Weakly correlated
283 AluYk3 2 n.s 19.6 Weakly correlated
284 HAL1M8 2 n.s 99.0 Highly correlated
285 HERV15-int 2 * 28.9 Weakly correlated
286 HERV35I-int 2 n.s 43.0 Weakly correlated
287 HERV9NC-int 2 n.s 19.6 Weakly correlated
288 HERVK11-int 2 n.s 28.9 Weakly correlated
289 HERVK22-int 2 n.s 43.0 Weakly correlated
290 HERVK3-int 2 n.s 28.9 Weakly correlated
291 HERVKC4-int 2 ** 28.9 Weakly correlated
292 HUERS-P3-int 2 n.s 43.0 Weakly correlated
293 L1M2c 2 n.s 87.0 Weakly correlated
294 L1MCb 2 n.s 99.0 Highly correlated
295 L1MDb 2 n.s 99.0 Highly correlated
296 L1MEg1 2 n.s 99.0 Highly correlated
297 L1PA14 2 n.s 74.0 Weakly correlated
298 L1PA15-16 2 n.s 74.0 Weakly correlated
299 L3b 2 n.s 99.0 Highly correlated
300 LTR105_Mam 2 * 99.0 Highly correlated
301 LTR10B1 2 ** 28.9 Weakly correlated
302 LTR16 2 n.s 99.0 Highly correlated
303 LTR16A2 2 n.s 99.0 Highly correlated
304 LTR19A 2 * 43.0 Weakly correlated
305 LTR25-int 2 n.s 43.0 Weakly correlated
306 LTR27B 2 ** 43.0 Weakly correlated
307 LTR27E 2 * 43.0 Weakly correlated
308 LTR28C 2 n.s 43.0 Weakly correlated
309 LTR29 2 n.s 43.0 Weakly correlated
310 LTR33A_ 2 n.s 99.0 Highly correlated
311 LTR33B 2 n.s 99.0 Highly correlated
312 LTR39 2 n.s 43.0 Weakly correlated
313 LTR47A 2 n.s 74.0 Weakly correlated
314 LTR52 2 n.s 99.0 Highly correlated
315 LTR54B 2 n.s 74.0 Weakly correlated
316 LTR55 2 * 99.0 Highly correlated
317 LTR56 2 n.s 74.0 Weakly correlated
318 LTR59 2 *** 43.0 Weakly correlated
319 LTR66 2 * 43.0 Weakly correlated
320 LTR7 2 n.s 19.6 Weakly correlated
321 LTR81B 2 n.s 99.0 Highly correlated
322 LTR88b 2 n.s 99.0 Highly correlated
323 LTR88c 2 * 99.0 Highly correlated
324 MER101-int 2 n.s 74.0 Weakly correlated
325 MER34 2 n.s 87.0 Weakly correlated
326 MER39 2 n.s 74.0 Weakly correlated
327 MER41D 2 * 74.0 Weakly correlated
328 MER49 2 n.s 43.0 Weakly correlated
329 MER4A1 2 n.s 74.0 Weakly correlated
330 MER4D1 2 n.s 74.0 Weakly correlated
331 MER52C 2 n.s 74.0 Weakly correlated
332 MER57A-int 2 n.s 43.0 Weakly correlated
333 MER57B1 2 n.s 43.0 Weakly correlated
334 MER57B2 2 n.s 43.0 Weakly correlated
335 MER61-int 2 n.s 43.0 Weakly correlated
336 MER66B 2 n.s 43.0 Weakly correlated
337 MER67A 2 * 99.0 Highly correlated
338 MER67B 2 * 99.0 Highly correlated
339 MER70B 2 n.s 87.0 Weakly correlated
340 MER72 2 n.s 43.0 Weakly correlated
341 MER74A 2 n.s 99.0 Highly correlated
342 MER84-int 2 ** 74.0 Weakly correlated
343 MER89 2 n.s 99.0 Highly correlated
344 MER90a 2 n.s 99.0 Highly correlated
345 MLT1A0-int 2 n.s 99.0 Highly correlated
346 MLT1F2-int 2 * 99.0 Highly correlated
347 MLT1G3 2 n.s 99.0 Highly correlated
348 MLT1H-int 2 n.s 99.0 Highly correlated
349 MLT1J-int 2 n.s 99.0 Highly correlated
350 MLT1M 2 n.s 99.0 Highly correlated
351 MLT1O 2 n.s 99.0 Highly correlated
352 Plat_L3 2 n.s 99.0 Highly correlated
353 AluYa8 1 * 15.2 Weakly correlated
354 AluYh9 1 ** 15.2 Weakly correlated
355 AluYk11 1 n.s 15.2 Weakly correlated
356 AluYk4 1 n.s 15.2 Weakly correlated
357 AmnSINE2 1 * 319.0 Weakly correlated
358 CR1_Mam 1 n.s 99.0 Highly correlated
359 HERV16-int 1 n.s 99.0 Highly correlated
360 HERV3-int 1 n.s 28.9 Weakly correlated
361 HERVK11D-int 1 n.s 19.6 Weakly correlated
362 HERVL-int 1 n.s 74.0 Weakly correlated
363 HERVL18-int 1 n.s 43.0 Weakly correlated
364 HERVL40-int 1 n.s 99.0 Highly correlated
365 HUERS-P3b-int 1 n.s 43.0 Weakly correlated
366 L1M 1 * 74.0 Weakly correlated
367 L1M2a 1 n.s 87.0 Weakly correlated
368 L1M3a 1 n.s 99.0 Highly correlated
369 L1M3c 1 n.s 99.0 Highly correlated
370 L1M3e 1 n.s 99.0 Highly correlated
371 L1M4a2 1 n.s 99.0 Highly correlated
372 L1M4c 1 n.s 99.0 Highly correlated
373 L1M6B 1 n.s 99.0 Highly correlated
374 L1M8 1 n.s 99.0 Highly correlated
375 L1P4a 1 n.s 74.0 Weakly correlated
376 L1PA12 1 n.s 74.0 Weakly correlated
377 L2-3_Crp 1 n.s 431.0 Weakly correlated
378 L4_B_Mam 1 n.s 99.0 Highly correlated
379 L5 1 n.s 99.0 Highly correlated
380 LOR1a 1 n.s 74.0 Weakly correlated
381 LTR101_Mam 1 n.s 99.0 Highly correlated
382 LTR103b_Mam 1 n.s 99.0 Highly correlated
383 LTR104_Mam 1 n.s 99.0 Highly correlated
384 LTR10C 1 n.s 28.9 Weakly correlated
385 LTR10G 1 * 28.9 Weakly correlated
386 LTR12F 1 n.s 28.9 Weakly correlated
387 LTR14 1 * 28.9 Weakly correlated
388 LTR16D1 1 * 99.0 Highly correlated
389 LTR1B 1 n.s 43.0 Weakly correlated
390 LTR1D1 1 n.s 43.0 Weakly correlated
391 LTR22B1 1 * 28.9 Weakly correlated
392 LTR23-int 1 * 74.0 Weakly correlated
393 LTR27 1 * 43.0 Weakly correlated
394 LTR2752 1 n.s 43.0 Weakly correlated
395 LTR28 1 n.s 43.0 Weakly correlated
396 LTR2B 1 n.s 19.6 Weakly correlated
397 LTR2C 1 n.s 19.6 Weakly correlated
398 LTR34 1 n.s 74.0 Weakly correlated
399 LTR36 1 n.s 74.0 Weakly correlated
400 LTR42 1 n.s 74.0 Weakly correlated
401 LTR45 1 * 99.0 Highly correlated
402 LTR45B 1 n.s 74.0 Weakly correlated
403 LTR45C 1 n.s 99.0 Highly correlated
404 LTR47B3 1 * 74.0 Weakly correlated
405 LTR5 1 *** 19.6 Weakly correlated
406 LTR57 1 n.s 74.0 Weakly correlated
407 LTR60B 1 n.s 74.0 Weakly correlated
408 LTR62 1 n.s 74.0 Weakly correlated
409 LTR65 1 n.s 99.0 Highly correlated
410 LTR71B 1 n.s 43.0 Weakly correlated
411 LTR75 1 n.s 99.0 Highly correlated
412 LTR76 1 n.s 74.0 Weakly correlated
413 LTR77 1 * 94.0 Weakly correlated
414 LTR78 1 n.s 99.0 Highly correlated
415 LTR81 1 * 99.0 Highly correlated
416 LTR84a 1 n.s 99.0 Highly correlated
417 LTR85a 1 n.s 99.0 Highly correlated
418 LTR85c 1 n.s 99.0 Highly correlated
419 LTR88a 1 n.s 99.0 Highly correlated
420 LTR9 1 n.s 43.0 Weakly correlated
421 LTR9B 1 n.s 43.0 Weakly correlated
422 MER21-int 1 n.s 99.0 Highly correlated
423 MER21A 1 n.s 74.0 Weakly correlated
424 MER21B 1 n.s 99.0 Highly correlated
425 MER31A 1 n.s 87.0 Weakly correlated
426 MER34A 1 n.s 99.0 Highly correlated
427 MER34B 1 n.s 87.0 Weakly correlated
428 MER34B-int 1 n.s 99.0 Highly correlated
429 MER41B 1 n.s 74.0 Weakly correlated
430 MER41G 1 * 74.0 Weakly correlated
431 MER48 1 * 28.9 Weakly correlated
432 MER4B-int 1 n.s 99.0 Highly correlated
433 MER4E1 1 n.s 74.0 Weakly correlated
434 MER50B 1 n.s 43.0 Weakly correlated
435 MER51-int 1 n.s 43.0 Weakly correlated
436 MER57-int 1 n.s 87.0 Weakly correlated
437 MER57D 1 n.s 87.0 Weakly correlated
438 MER61E 1 n.s 43.0 Weakly correlated
439 MER65-int 1 n.s 87.0 Weakly correlated
440 MER66-int 1 n.s 43.0 Weakly correlated
441 MER66C 1 n.s 43.0 Weakly correlated
442 MER67C 1 n.s 99.0 Highly correlated
443 MER67D 1 n.s 99.0 Highly correlated
444 MER70C 1 n.s 99.0 Highly correlated
445 MER72B 1 * 43.0 Weakly correlated
446 MER74B 1 n.s 99.0 Highly correlated
447 MER76 1 n.s 99.0 Highly correlated
448 MER77 1 n.s 99.0 Highly correlated
449 MER95 1 * 99.0 Highly correlated
450 MER9a1 1 n.s 19.6 Weakly correlated
451 MLT1A-int 1 n.s 99.0 Highly correlated
452 MLT1A1-int 1 n.s 87.0 Weakly correlated
453 MLT1B-int 1 n.s 99.0 Highly correlated
454 MLT1F-int 1 n.s 99.0 Highly correlated
455 MLT2B4 1 n.s 99.0 Highly correlated
456 MSTB1-int 1 n.s 74.0 Weakly correlated
457 MSTC 1 n.s 74.0 Weakly correlated
458 MSTC-int 1 n.s 74.0 Weakly correlated
459 MamGypLTR1c 1 n.s 99.0 Highly correlated
460 MamGypsy2-I 1 n.s 99.0 Highly correlated
461 MamRep1151 1 n.s 99.0 Highly correlated
462 PRIMA41-int 1 n.s 74.0 Weakly correlated
463 SVA_F 1 n.s 0.0 Weakly correlated
464 THE1A 1 n.s 43.0 Weakly correlated
465 THE1C-int 1 n.s 43.0 Weakly correlated
466 THE1D-int 1 n.s 28.9 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 AluY 347 **** 74.0 Weakly correlated
2 AluSx 312 **** 74.0 Weakly correlated
3 AluSx1 303 **** 74.0 Weakly correlated
4 AluJb 286 **** 74.0 Weakly correlated
5 AluSz 257 **** 74.0 Weakly correlated
6 AluSq2 162 **** 74.0 Weakly correlated
7 AluJo 152 **** 74.0 Weakly correlated
8 AluSp 148 **** 74.0 Weakly correlated
9 AluJr 124 *** 74.0 Weakly correlated
10 AluSz6 122 **** 74.0 Weakly correlated
11 AluSg 116 **** 74.0 Weakly correlated
12 L1MB7 110 **** 99.0 Highly correlated
13 AluSc 103 **** 74.0 Weakly correlated
14 L1MB8 80 **** 99.0 Highly correlated
15 AluSx3 76 **** 74.0 Weakly correlated
16 L1MB5 63 **** 99.0 Highly correlated
17 AluSc8 58 **** 74.0 Weakly correlated
18 AluSq 58 **** 74.0 Weakly correlated
19 L2a 53 n.s 99.0 Highly correlated
20 L1MB4 45 **** 99.0 Highly correlated
21 L1ME1 41 n.s 99.0 Highly correlated
22 MIRb 38 n.s 99.0 Highly correlated
23 L1PB1 31 n.s 74.0 Weakly correlated
24 AluSx4 30 **** 74.0 Weakly correlated
25 L1M5 30 n.s 99.0 Highly correlated
26 MIR 30 n.s 99.0 Highly correlated
27 L1ME3A 29 n.s 99.0 Highly correlated
28 AluJr4 26 n.s 74.0 Weakly correlated
29 L1MEc 26 n.s 99.0 Highly correlated
30 L1M4 25 n.s 99.0 Highly correlated
31 L2b 24 n.s 99.0 Highly correlated
32 L2c 24 n.s 99.0 Highly correlated
33 AluSc5 23 **** 74.0 Weakly correlated
34 L1MC4 21 n.s 99.0 Highly correlated
35 AluYh3 19 **** 15.2 Weakly correlated
36 L1MB3 19 n.s 99.0 Highly correlated
37 AluSg7 18 * 74.0 Weakly correlated
38 AluYj4 17 **** 0.0 Weakly correlated
39 L1MEd 16 n.s 99.0 Highly correlated
40 AluYm1 15 *** 19.6 Weakly correlated
41 FLAM_A 15 ** 74.0 Weakly correlated
42 L1ME2 15 n.s 99.0 Highly correlated
43 L1ME4a 15 n.s 99.0 Highly correlated
44 SVA_D 15 * 15.2 Weakly correlated
45 AluSg4 14 * 74.0 Weakly correlated
46 L1MC5 14 n.s 99.0 Highly correlated
47 FLAM_C 13 n.s 74.0 Weakly correlated
48 L1MA9 13 n.s 99.0 Highly correlated
49 L1ME2z 13 n.s 99.0 Highly correlated
50 L1PA16 13 n.s 74.0 Weakly correlated
51 L2 13 n.s 99.0 Highly correlated
52 AluYc 12 *** 74.0 Weakly correlated
53 L1MEg 12 n.s 99.0 Highly correlated
54 L1PA5 12 n.s 19.6 Weakly correlated
55 Alu 11 **** 74.0 Weakly correlated
56 L1ME3 11 n.s 99.0 Highly correlated
57 L1MA4 10 n.s 87.0 Weakly correlated
58 L1MC5a 10 n.s 99.0 Highly correlated
59 L1M1 9 n.s 74.0 Weakly correlated
60 L1M2 9 n.s 99.0 Highly correlated
61 L1ME4b 9 n.s 99.0 Highly correlated
62 L1MEf 9 n.s 99.0 Highly correlated
63 HAL1 8 n.s 99.0 Highly correlated
64 L1MA1 8 n.s 74.0 Weakly correlated
65 L1MA8 8 n.s 87.0 Weakly correlated
66 L1MC1 8 n.s 99.0 Highly correlated
67 L1PA2 8 n.s 15.2 Weakly correlated
68 L1PA3 8 n.s 19.6 Weakly correlated
69 MIRc 8 n.s 99.0 Highly correlated
70 L1MA4A 7 n.s 87.0 Weakly correlated
71 L1MB2 7 n.s 99.0 Highly correlated
72 L1MD2 7 n.s 99.0 Highly correlated
73 L1MDa 7 n.s 99.0 Highly correlated
74 L3 7 n.s 99.0 Highly correlated
75 AluSq4 6 ** 74.0 Weakly correlated
76 FRAM 6 n.s 74.0 Weakly correlated
77 L1MA3 6 n.s 74.0 Weakly correlated
78 L1MC 6 n.s 99.0 Highly correlated
79 L1MCa 6 n.s 99.0 Highly correlated
80 L1ME3B 6 n.s 99.0 Highly correlated
81 L1ME3D 6 n.s 99.0 Highly correlated
82 L1PA13 6 n.s 74.0 Weakly correlated
83 L1PB2 6 n.s 74.0 Weakly correlated
84 MLT1B 6 n.s 99.0 Highly correlated
85 AluYe5 5 ** 74.0 Weakly correlated
86 L1M3 5 n.s 99.0 Highly correlated
87 L1MA2 5 n.s 74.0 Weakly correlated
88 L1MA5 5 n.s 87.0 Weakly correlated
89 L1MA5A 5 n.s 87.0 Weakly correlated
90 L1MC2 5 n.s 99.0 Highly correlated
91 L1MC3 5 n.s 99.0 Highly correlated
92 L1MC4a 5 n.s 99.0 Highly correlated
93 L1MD1 5 n.s 99.0 Highly correlated
94 L1ME3Cz 5 n.s 99.0 Highly correlated
95 L1ME3G 5 n.s 99.0 Highly correlated
96 L1P3 5 n.s 74.0 Weakly correlated
97 L1PA10 5 n.s 74.0 Weakly correlated
98 L1PA4 5 n.s 19.6 Weakly correlated
99 L1PA8 5 n.s 74.0 Weakly correlated
100 MLT1D 5 n.s 99.0 Highly correlated
101 SVA_A 5 * 19.6 Weakly correlated
102 HAL1ME 4 n.s 99.0 Highly correlated
103 L1MA7 4 n.s 87.0 Weakly correlated
104 L1MB1 4 n.s 99.0 Highly correlated
105 L1ME3E 4 n.s 99.0 Highly correlated
106 L1MEi 4 n.s 99.0 Highly correlated
107 L1P4 4 n.s 74.0 Weakly correlated
108 L1PA11 4 n.s 74.0 Weakly correlated
109 L1PA15 4 n.s 74.0 Weakly correlated
110 L1PA7 4 n.s 74.0 Weakly correlated
111 MER41-int 4 n.s 74.0 Weakly correlated
112 MIR3 4 n.s 99.0 Highly correlated
113 SVA_E 4 * 0.0 Weakly correlated
114 THE1B 4 n.s 43.0 Weakly correlated
115 AluSq10 3 n.s 74.0 Weakly correlated
116 AluYa5 3 n.s 15.2 Weakly correlated
117 L1M4a1 3 n.s 99.0 Highly correlated
118 L1MA6 3 n.s 87.0 Weakly correlated
119 L1MCc 3 n.s 99.0 Highly correlated
120 L1MD 3 n.s 99.0 Highly correlated
121 L1MD3 3 n.s 99.0 Highly correlated
122 L1ME3C 3 n.s 99.0 Highly correlated
123 L1ME5 3 n.s 99.0 Highly correlated
124 L1MEb 3 n.s 99.0 Highly correlated
125 L1PA17 3 n.s 74.0 Weakly correlated
126 L1PA6 3 n.s 28.9 Weakly correlated
127 L1PA8A 3 n.s 74.0 Weakly correlated
128 L1PB 3 n.s 74.0 Weakly correlated
129 L1PB3 3 n.s 74.0 Weakly correlated
130 L4_A_Mam 3 n.s 99.0 Highly correlated
131 LTR37-int 3 n.s 99.0 Highly correlated
132 LTR37A 3 n.s 99.0 Highly correlated
133 LTR49-int 3 n.s 74.0 Weakly correlated
134 MER4-int 3 n.s 74.0 Weakly correlated
135 MER4A 3 n.s 74.0 Weakly correlated
136 MLT1C 3 n.s 94.0 Weakly correlated
137 MLT1F2 3 n.s 99.0 Highly correlated
138 MLT1L 3 n.s 99.0 Highly correlated
139 MSTA 3 n.s 43.0 Weakly correlated
140 MSTB 3 n.s 43.0 Weakly correlated
141 THE1D 3 n.s 43.0 Weakly correlated
142 AluYf1 2 n.s 19.6 Weakly correlated
143 AluYg6 2 * 15.2 Weakly correlated
144 AluYk2 2 n.s 19.6 Weakly correlated
145 AluYk3 2 n.s 19.6 Weakly correlated
146 ERVL-B4-int 2 n.s 99.0 Highly correlated
147 FAM 2 n.s 87.0 Weakly correlated
148 HAL1b 2 n.s 99.0 Highly correlated
149 HERV15-int 2 * 28.9 Weakly correlated
150 HERVK22-int 2 n.s 43.0 Weakly correlated
151 L1M6 2 n.s 99.0 Highly correlated
152 L1M7 2 n.s 99.0 Highly correlated
153 L1MCb 2 n.s 99.0 Highly correlated
154 L1MDb 2 n.s 99.0 Highly correlated
155 L1ME3F 2 n.s 99.0 Highly correlated
156 L1ME4c 2 n.s 99.0 Highly correlated
157 L1MEh 2 n.s 99.0 Highly correlated
158 L1PBb 2 n.s 74.0 Weakly correlated
159 L1PREC2 2 n.s 43.0 Weakly correlated
160 LTR23 2 * 74.0 Weakly correlated
161 LTR33 2 n.s 99.0 Highly correlated
162 LTR33A 2 n.s 99.0 Highly correlated
163 LTR39 2 n.s 43.0 Weakly correlated
164 LTR40a 2 n.s 99.0 Highly correlated
165 LTR41 2 n.s 99.0 Highly correlated
166 LTR54 2 n.s 74.0 Weakly correlated
167 LTR56 2 n.s 74.0 Weakly correlated
168 LTR7 2 n.s 19.6 Weakly correlated
169 MER101 2 * 74.0 Weakly correlated
170 MER101-int 2 n.s 74.0 Weakly correlated
171 MER34D 2 ** 74.0 Weakly correlated
172 MER39 2 n.s 74.0 Weakly correlated
173 MER74A 2 n.s 99.0 Highly correlated
174 MER84-int 2 ** 74.0 Weakly correlated
175 MER89 2 n.s 99.0 Highly correlated
176 MLT1A1 2 n.s 87.0 Weakly correlated
177 MLT1E3 2 n.s 99.0 Highly correlated
178 MLT1F 2 n.s 99.0 Highly correlated
179 MLT1H 2 n.s 99.0 Highly correlated
180 MLT1I 2 n.s 99.0 Highly correlated
181 MLT1J2 2 n.s 99.0 Highly correlated
182 MLT1K 2 n.s 99.0 Highly correlated
183 MSTB1 2 n.s 74.0 Weakly correlated
184 SVA_B 2 n.s 15.2 Weakly correlated
185 SVA_C 2 n.s 15.2 Weakly correlated
186 THE1A-int 2 n.s 43.0 Weakly correlated
187 THE1C 2 n.s 43.0 Weakly correlated
188 MLT1G 2 n.s 99.0 Highly correlated
189 AluYb8 1 n.s 15.2 Weakly correlated
190 AluYk4 1 n.s 15.2 Weakly correlated
191 ERV3-16A3_I-int 1 n.s 99.0 Highly correlated
192 ERVL-E-int 1 n.s 99.0 Highly correlated
193 HAL1M8 1 n.s 99.0 Highly correlated
194 HERV4_I-int 1 n.s 43.0 Weakly correlated
195 HERVL-int 1 n.s 74.0 Weakly correlated
196 HERVL40-int 1 n.s 99.0 Highly correlated
197 HUERS-P1-int 1 n.s 43.0 Weakly correlated
198 HUERS-P3-int 1 n.s 43.0 Weakly correlated
199 L1M 1 * 74.0 Weakly correlated
200 L1M3e 1 n.s 99.0 Highly correlated
201 L1M3f 1 n.s 87.0 Weakly correlated
202 L1MA10 1 n.s 99.0 Highly correlated
203 L1MEj 1 n.s 99.0 Highly correlated
204 L1P1 1 n.s 19.6 Weakly correlated
205 L1PA15-16 1 n.s 74.0 Weakly correlated
206 L1PB4 1 n.s 99.0 Highly correlated
207 L1PBa1 1 n.s 74.0 Weakly correlated
208 LOR1-int 1 n.s 74.0 Weakly correlated
209 LOR1a 1 n.s 74.0 Weakly correlated
210 LTR12C 1 n.s 19.6 Weakly correlated
211 LTR13 1 n.s 19.6 Weakly correlated
212 LTR16A 1 n.s 99.0 Highly correlated
213 LTR16C 1 n.s 99.0 Highly correlated
214 LTR17 1 n.s 28.9 Weakly correlated
215 LTR22B1 1 * 28.9 Weakly correlated
216 LTR23-int 1 * 74.0 Weakly correlated
217 LTR3B_ 1 n.s 28.9 Weakly correlated
218 LTR42 1 n.s 74.0 Weakly correlated
219 LTR48 1 n.s 74.0 Weakly correlated
220 LTR50 1 n.s 99.0 Highly correlated
221 LTR52 1 n.s 99.0 Highly correlated
222 LTR54B 1 n.s 74.0 Weakly correlated
223 LTR78B 1 n.s 99.0 Highly correlated
224 LTR79 1 n.s 99.0 Highly correlated
225 LTR8 1 n.s 43.0 Weakly correlated
226 LTR84a 1 n.s 99.0 Highly correlated
227 LTR8A 1 n.s 43.0 Weakly correlated
228 MER21C 1 n.s 99.0 Highly correlated
229 MER34 1 n.s 87.0 Weakly correlated
230 MER41D 1 n.s 74.0 Weakly correlated
231 MER41G 1 * 74.0 Weakly correlated
232 MER49 1 n.s 43.0 Weakly correlated
233 MER4B 1 n.s 74.0 Weakly correlated
234 MER4D 1 n.s 74.0 Weakly correlated
235 MER4E1 1 n.s 74.0 Weakly correlated
236 MER51-int 1 n.s 43.0 Weakly correlated
237 MER51A 1 n.s 43.0 Weakly correlated
238 MER57-int 1 n.s 87.0 Weakly correlated
239 MER57E3 1 * 74.0 Weakly correlated
240 MER65-int 1 n.s 87.0 Weakly correlated
241 MER90a 1 n.s 99.0 Highly correlated
242 MLT1A 1 n.s 99.0 Highly correlated
243 MLT1A-int 1 n.s 99.0 Highly correlated
244 MLT1A0 1 n.s 99.0 Highly correlated
245 MLT1A0-int 1 n.s 99.0 Highly correlated
246 MLT1E1A 1 n.s 99.0 Highly correlated
247 MLT1E2 1 n.s 99.0 Highly correlated
248 MLT1F-int 1 n.s 99.0 Highly correlated
249 MLT1F1 1 n.s 99.0 Highly correlated
250 MLT1N2 1 n.s 99.0 Highly correlated
251 MLT2A2 1 n.s 74.0 Weakly correlated
252 MLT2B2 1 n.s 99.0 Highly correlated
253 MLT2B4 1 n.s 99.0 Highly correlated
254 MLT2C2 1 n.s 99.0 Highly correlated
255 MLT2D 1 n.s 99.0 Highly correlated
256 MSTA-int 1 n.s 43.0 Weakly correlated
257 MSTB2 1 n.s 74.0 Weakly correlated
258 MamGypsy2-I 1 n.s 99.0 Highly correlated
259 MamRep1151 1 n.s 99.0 Highly correlated
260 MamRep605 1 n.s 99.0 Highly correlated
261 THE1B-int 1 n.s 43.0 Weakly correlated
262 L1MEg2 1 n.s 99.0 Highly correlated
263 LTR36 1 n.s 74.0 Weakly correlated
264 L1M6B 1 n.s 99.0 Highly correlated
265 L1PA14 1 n.s 74.0 Weakly correlated
266 HERVK-int 1 n.s 28.9 Weakly correlated
267 L4_C_Mam 1 n.s 99.0 Highly correlated
268 LTR5 1 *** 19.6 Weakly correlated
269 PRIMA4-int 1 n.s 74.0 Weakly correlated
270 MER57B1 1 n.s 43.0 Weakly correlated
271 HERVH-int 1 n.s 28.9 Weakly correlated
272 MER50 1 n.s 43.0 Weakly correlated
273 MLT1H1 1 n.s 99.0 Highly correlated
274 MSTD 1 n.s 74.0 Weakly correlated
275 LTR71B 1 n.s 43.0 Weakly correlated
276 MER67C 1 n.s 99.0 Highly correlated
277 MER74B 1 n.s 99.0 Highly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 L1MB3 99.0 Highly correlated
2 L1ME3B 99.0 Highly correlated
3 L1MEC 99.0 Highly correlated
4 L2A 99.0 Highly correlated