ZRdb KZFP & Repeats
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Human_ZNF133

  • Protein
    Zinc finger protein 133
  • Length
    654
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    99.0 Mya
  • Time of Changing in binding specificity
    99.0 Mya
  • Uniprot_ID
    P52736
  • NCBI_ID
    7692
Sequence:
MAFRDVAVDFTQDEWRLLSPAQRTLYREVMLENYSNLVSLGISFSKPELITQLEQGKETWREEKKCSPATCPADPEPELYLDPFCPPGFSSQKFPMQHVLCNHPPWIFTCLCAEGNIQPGDPGPGDQEKQQQASEGRPWSDQAEGPEGEGAMPLFGRTKKRTLGAFSRPPQRQPVSSRNGLRGVELEASPAQSGNPEETDKLLKRIEVLGFGTVNCGECGLSFSKMTNLLSHQRIHSGEKPYVCGVCEKGFSLKKSLARHQKAHSGEKPIVCRECGRGFNRKSTLIIHERTHSGEKPYMCSECGRGFSQKSNLIIHQRTHSGEKPYVCRECGKGFSQKSAVVRHQRTHLEEKTIVCSDCGLGFSDRSNLISHQRTHSGEKPYACKECGRCFRQRTTLVNHQRTHSKEKPYVCGVCGHSFSQNSTLISHRRTHTGEKPYVCGVCGRGFSLKSHLNRHQNIHSGEKPIVCKDCGRGFSQQSNLIRHQRTHSGEKPMVCGECGRGFSQKSNLVAHQRTHSGERPYVCRECGRGFSHQAGLIRHKRKHSREKPYMCRQCGLGFGNKSALITHKRAHSEEKPCVCRECGQGFLQKSHLTLHQMTHTGEKPYVCKTCGRGFSLKSHLSRHRKTTSVHHRLPVQPDPEPCAGQPSDSLYSL
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 1..72
2 C2h2 214..236
3 C2h2 242..264
4 C2h2 270..292
5 C2h2 298..320
6 C2h2 326..348
7 C2h2 354..376
8 C2h2 382..404
9 C2h2 410..432
10 C2h2 438..460
11 C2h2 466..488
12 C2h2 494..516
13 C2h2 522..544
14 C2h2 550..572
15 C2h2 578..600
16 C2h2 606..631
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity
3 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
4 Molecular Function DNA-binding transcription repressor activity, RNA polymerase II-specific
5 Molecular Function metal ion binding
6 Molecular Function RNA polymerase II transcription regulatory region sequence-specific DNA binding
7 Biological Process negative regulation of transcription by RNA polymerase II
8 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1MEc 218 **** 99.0 Highly correlated
2 L2a 167 **** 99.0 Highly correlated
3 L1MEg 159 **** 99.0 Highly correlated
4 L1MEf 154 **** 99.0 Highly correlated
5 MIRb 152 **** 99.0 Highly correlated
6 L1MEd 141 **** 99.0 Highly correlated
7 L1MC4 132 **** 99.0 Highly correlated
8 L2c 128 **** 99.0 Highly correlated
9 L1ME1 118 **** 99.0 Highly correlated
10 L2b 114 **** 99.0 Highly correlated
11 MIR 104 ** 99.0 Highly correlated
12 HAL1 99 **** 99.0 Highly correlated
13 HAL1M8 93 **** 99.0 Highly correlated
14 L1M4 82 **** 99.0 Highly correlated
15 L1MCa 80 **** 99.0 Highly correlated
16 AluJb 77 n.s 74.0 Weakly correlated
17 L1M7 77 **** 99.0 Highly correlated
18 L2 76 **** 99.0 Highly correlated
19 L1PA16 70 **** 74.0 Weakly correlated
20 AluSx1 69 n.s 74.0 Weakly correlated
21 L1M8 60 **** 99.0 Highly correlated
22 MIRc 60 *** 99.0 Highly correlated
23 L1PB1 59 *** 74.0 Weakly correlated
24 MIR3 58 **** 99.0 Highly correlated
25 AluSz 57 n.s 74.0 Weakly correlated
26 AluSx 56 n.s 74.0 Weakly correlated
27 AluJr 53 n.s 74.0 Weakly correlated
28 L1MB7 52 **** 99.0 Highly correlated
29 AluY 50 n.s 74.0 Weakly correlated
30 L1M5 47 n.s 99.0 Highly correlated
31 AluJo 44 n.s 74.0 Weakly correlated
32 HAL1b 43 **** 99.0 Highly correlated
33 L1M4a1 41 **** 99.0 Highly correlated
34 L1MA3 39 ** 74.0 Weakly correlated
35 AluSz6 38 n.s 74.0 Weakly correlated
36 L3 38 ** 99.0 Highly correlated
37 L1MB3 37 *** 99.0 Highly correlated
38 MSTA 37 **** 43.0 Weakly correlated
39 L1M1 36 * 74.0 Weakly correlated
40 AluSq2 35 n.s 74.0 Weakly correlated
41 L1MCc 34 **** 99.0 Highly correlated
42 L1PA15 34 ** 74.0 Weakly correlated
43 AluSp 32 n.s 74.0 Weakly correlated
44 L1M4b 32 **** 99.0 Highly correlated
45 L1PB4 31 **** 99.0 Highly correlated
46 L1MA2 30 * 74.0 Weakly correlated
47 L1MC1 30 * 99.0 Highly correlated
48 L1ME2 30 *** 99.0 Highly correlated
49 L1ME4a 30 * 99.0 Highly correlated
50 L1MA4 29 ** 87.0 Weakly correlated
51 L1MB8 28 * 99.0 Highly correlated
52 L1MC5 28 **** 99.0 Highly correlated
53 L1MD2 28 *** 99.0 Highly correlated
54 L1ME3A 28 ** 99.0 Highly correlated
55 AluSc 27 n.s 74.0 Weakly correlated
56 L1MB4 25 **** 99.0 Highly correlated
57 L1MDa 25 *** 99.0 Highly correlated
58 L1ME3 25 **** 99.0 Highly correlated
59 L1MC2 24 **** 99.0 Highly correlated
60 L1PA5 24 n.s 19.6 Weakly correlated
61 L1PA7 24 n.s 74.0 Weakly correlated
62 L1ME4b 23 * 99.0 Highly correlated
63 L1PA13 23 n.s 74.0 Weakly correlated
64 L1PA4 23 n.s 19.6 Weakly correlated
65 MER11A 23 **** 28.9 Weakly correlated
66 AluSg 22 n.s 74.0 Weakly correlated
67 L1MA10 22 **** 99.0 Highly correlated
68 L1MA9 22 n.s 99.0 Highly correlated
69 L1MB5 22 ** 99.0 Highly correlated
70 MLT1C 21 n.s 94.0 Weakly correlated
71 L1M4c 20 **** 99.0 Highly correlated
72 L1MB2 20 ** 99.0 Highly correlated
73 L1PREC2 19 n.s 43.0 Weakly correlated
74 MLT1K 19 ** 99.0 Highly correlated
75 L1MD1 18 * 99.0 Highly correlated
76 L1PBa 18 *** 74.0 Weakly correlated
77 HAL1ME 17 **** 99.0 Highly correlated
78 L1M4a2 17 **** 99.0 Highly correlated
79 L1MC3 17 n.s 99.0 Highly correlated
80 L1MCb 17 **** 99.0 Highly correlated
81 L1ME2z 17 *** 99.0 Highly correlated
82 L1PA8 17 n.s 74.0 Weakly correlated
83 AluSc8 16 n.s 74.0 Weakly correlated
84 AluSx3 16 n.s 74.0 Weakly correlated
85 L1ME3Cz 16 * 99.0 Highly correlated
86 MLT1J 16 * 99.0 Highly correlated
87 MSTB 16 ** 43.0 Weakly correlated
88 FLAM_A 15 **** 74.0 Weakly correlated
89 L1MA4A 15 n.s 87.0 Weakly correlated
90 L1MC5a 15 n.s 99.0 Highly correlated
91 MLT1H 15 ** 99.0 Highly correlated
92 ERV3-16A3_I-int 14 n.s 99.0 Highly correlated
93 L1M2 14 n.s 99.0 Highly correlated
94 L1ME3G 14 n.s 99.0 Highly correlated
95 MER39 14 **** 74.0 Weakly correlated
96 MLT1A0 14 n.s 99.0 Highly correlated
97 MLT1B 14 n.s 99.0 Highly correlated
98 THE1B 14 n.s 43.0 Weakly correlated
99 L1M6 13 *** 99.0 Highly correlated
100 L1MC4a 13 n.s 99.0 Highly correlated
101 L1MEb 13 **** 99.0 Highly correlated
102 L1PA17 13 n.s 74.0 Weakly correlated
103 L1PB2 13 ** 74.0 Weakly correlated
104 FLAM_C 12 n.s 74.0 Weakly correlated
105 L1ME3B 12 n.s 99.0 Highly correlated
106 L1MEi 12 ** 99.0 Highly correlated
107 L1PA10 12 n.s 74.0 Weakly correlated
108 L1PB3 12 n.s 74.0 Weakly correlated
109 AluSq 11 n.s 74.0 Weakly correlated
110 AluSx4 11 n.s 74.0 Weakly correlated
111 L1MA1 11 n.s 74.0 Weakly correlated
112 L1PA14 11 n.s 74.0 Weakly correlated
113 L1PA6 11 n.s 28.9 Weakly correlated
114 L4_A_Mam 11 ** 99.0 Highly correlated
115 MLT1D 11 n.s 99.0 Highly correlated
116 L1MA5 10 n.s 87.0 Weakly correlated
117 L1ME3F 10 ** 99.0 Highly correlated
118 L1PA3 10 n.s 19.6 Weakly correlated
119 MLT1A 10 n.s 99.0 Highly correlated
120 MLT1I 10 n.s 99.0 Highly correlated
121 MamRTE1 10 ** 99.0 Highly correlated
122 THE1C 10 n.s 43.0 Weakly correlated
123 THE1D 10 n.s 43.0 Weakly correlated
124 ERVL-B4-int 9 n.s 99.0 Highly correlated
125 L1M3 9 n.s 99.0 Highly correlated
126 L1MA7 9 n.s 87.0 Weakly correlated
127 L1MA8 9 n.s 87.0 Weakly correlated
128 L1ME3D 9 * 99.0 Highly correlated
129 L1ME3E 9 * 99.0 Highly correlated
130 L3b 9 ** 99.0 Highly correlated
131 MLT1F2 9 n.s 99.0 Highly correlated
132 MamSINE1 9 **** 99.0 Highly correlated
133 AluJr4 8 n.s 74.0 Weakly correlated
134 ERVL-E-int 8 n.s 99.0 Highly correlated
135 L1MB1 8 n.s 99.0 Highly correlated
136 L1MD3 8 n.s 99.0 Highly correlated
137 L1P4 8 n.s 74.0 Weakly correlated
138 L1PA11 8 n.s 74.0 Weakly correlated
139 L1PA12 8 * 74.0 Weakly correlated
140 MLT1J2 8 * 99.0 Highly correlated
141 L1M3f 7 *** 87.0 Weakly correlated
142 L1MD 7 n.s 99.0 Highly correlated
143 L1PA2 7 n.s 15.2 Weakly correlated
144 LTR12C 7 n.s 19.6 Weakly correlated
145 MIR1_Amn 7 * 319.0 Weakly correlated
146 HERVIP10FH-int 6 *** 28.9 Weakly correlated
147 L1MA5A 6 n.s 87.0 Weakly correlated
148 L1MA6 6 n.s 87.0 Weakly correlated
149 L1ME4c 6 n.s 99.0 Highly correlated
150 L1ME5 6 * 99.0 Highly correlated
151 L1P1 6 n.s 19.6 Weakly correlated
152 L1PA15-16 6 n.s 74.0 Weakly correlated
153 LTR28C 6 **** 43.0 Weakly correlated
154 MER50 6 * 43.0 Weakly correlated
155 MER57-int 6 * 87.0 Weakly correlated
156 MLT1F 6 n.s 99.0 Highly correlated
157 MLT1H1 6 * 99.0 Highly correlated
158 MLT1J1 6 * 99.0 Highly correlated
159 MSTD 6 n.s 74.0 Weakly correlated
160 HERVK22-int 5 ** 43.0 Weakly correlated
161 Harlequin-int 5 * 74.0 Weakly correlated
162 L1M3c 5 ** 99.0 Highly correlated
163 L1MC 5 n.s 99.0 Highly correlated
164 L1ME3C 5 n.s 99.0 Highly correlated
165 L1MEh 5 * 99.0 Highly correlated
166 LTR16C 5 n.s 99.0 Highly correlated
167 MLT1E1A 5 n.s 99.0 Highly correlated
168 MLT1F1 5 n.s 99.0 Highly correlated
169 MLT1G1 5 n.s 99.0 Highly correlated
170 MLT1H2 5 n.s 99.0 Highly correlated
171 MLT1L 5 n.s 99.0 Highly correlated
172 MLT1N2 5 n.s 99.0 Highly correlated
173 MLT2C1 5 ** 99.0 Highly correlated
174 Alu 4 *** 74.0 Weakly correlated
175 HERV16-int 4 n.s 99.0 Highly correlated
176 HERVIP10B3-int 4 ** 28.9 Weakly correlated
177 HERVL-int 4 n.s 74.0 Weakly correlated
178 L1P2 4 n.s 28.9 Weakly correlated
179 L1P3 4 n.s 74.0 Weakly correlated
180 L4_B_Mam 4 n.s 99.0 Highly correlated
181 LOR1-int 4 n.s 74.0 Weakly correlated
182 LTR16 4 n.s 99.0 Highly correlated
183 LTR16A1 4 n.s 99.0 Highly correlated
184 LTR1A2 4 * 43.0 Weakly correlated
185 LTR33 4 n.s 99.0 Highly correlated
186 LTR37A 4 ** 99.0 Highly correlated
187 LTR41B 4 *** 99.0 Highly correlated
188 LTR55 4 **** 99.0 Highly correlated
189 LTR78 4 n.s 99.0 Highly correlated
190 MER21B 4 n.s 99.0 Highly correlated
191 MER21C 4 n.s 99.0 Highly correlated
192 MER4A 4 ** 74.0 Weakly correlated
193 MER4D 4 * 74.0 Weakly correlated
194 MLT2B1 4 n.s 99.0 Highly correlated
195 AluSg7 3 n.s 74.0 Weakly correlated
196 AmnSINE1 3 ** 319.0 Weakly correlated
197 FRAM 3 n.s 74.0 Weakly correlated
198 HERVH-int 3 n.s 28.9 Weakly correlated
199 L1M3b 3 * 99.0 Highly correlated
200 L1MDb 3 n.s 99.0 Highly correlated
201 L1MEg2 3 ** 99.0 Highly correlated
202 L1MEj 3 n.s 99.0 Highly correlated
203 L1PB 3 n.s 74.0 Weakly correlated
204 L1PBb 3 * 74.0 Weakly correlated
205 LTR102_Mam 3 ** 99.0 Highly correlated
206 LTR10A 3 *** 28.9 Weakly correlated
207 LTR10B1 3 **** 28.9 Weakly correlated
208 LTR10E 3 *** 28.9 Weakly correlated
209 LTR13 3 * 19.6 Weakly correlated
210 LTR16B2 3 n.s 99.0 Highly correlated
211 LTR26 3 ** 74.0 Weakly correlated
212 LTR32 3 * 43.0 Weakly correlated
213 LTR37-int 3 * 99.0 Highly correlated
214 LTR41 3 * 99.0 Highly correlated
215 LTR52 3 ** 99.0 Highly correlated
216 LTR53-int 3 ** 99.0 Highly correlated
217 LTR54 3 ** 74.0 Weakly correlated
218 LTR67B 3 n.s 99.0 Highly correlated
219 LTR75 3 *** 99.0 Highly correlated
220 LTR78B 3 n.s 99.0 Highly correlated
221 LTR88a 3 *** 99.0 Highly correlated
222 LTR89 3 ** 99.0 Highly correlated
223 MER21-int 3 n.s 99.0 Highly correlated
224 MER31B 3 * 99.0 Highly correlated
225 MER34-int 3 ** 99.0 Highly correlated
226 MER4B-int 3 n.s 99.0 Highly correlated
227 MER57A1 3 * 43.0 Weakly correlated
228 MER67B 3 ** 99.0 Highly correlated
229 MER68 3 n.s 99.0 Highly correlated
230 MER70C 3 *** 99.0 Highly correlated
231 MER90a 3 * 99.0 Highly correlated
232 MLT1A1 3 n.s 87.0 Weakly correlated
233 MLT1E1 3 * 99.0 Highly correlated
234 MLT1G3 3 n.s 99.0 Highly correlated
235 MLT1O 3 n.s 99.0 Highly correlated
236 MLT2B3 3 n.s 99.0 Highly correlated
237 MLT2D 3 n.s 99.0 Highly correlated
238 MSTB1 3 n.s 74.0 Weakly correlated
239 MamGypsy2-I 3 n.s 99.0 Highly correlated
240 MamRep1527 3 * 99.0 Highly correlated
241 MamRep605 3 n.s 99.0 Highly correlated
242 Mam_R4 3 *** 99.0 Highly correlated
243 AluSc5 2 n.s 74.0 Weakly correlated
244 AluSg4 2 n.s 74.0 Weakly correlated
245 AluSq10 2 n.s 74.0 Weakly correlated
246 AluYe5 2 n.s 74.0 Weakly correlated
247 AluYk11 2 ** 15.2 Weakly correlated
248 AluYk4 2 n.s 15.2 Weakly correlated
249 AluYm1 2 n.s 19.6 Weakly correlated
250 ERV3-16A3_LTR 2 * 99.0 Highly correlated
251 HERV9NC-int 2 n.s 19.6 Weakly correlated
252 HERVIP10F-int 2 n.s 28.9 Weakly correlated
253 HUERS-P3-int 2 n.s 43.0 Weakly correlated
254 L1M6B 2 ** 99.0 Highly correlated
255 L1MEa 2 ** 99.0 Highly correlated
256 L1MEg1 2 * 99.0 Highly correlated
257 L1P4a 2 n.s 74.0 Weakly correlated
258 L1PA8A 2 n.s 74.0 Weakly correlated
259 L4_C_Mam 2 n.s 99.0 Highly correlated
260 LTR101_Mam 2 n.s 99.0 Highly correlated
261 LTR12 2 n.s 28.9 Weakly correlated
262 LTR12_ 2 n.s 28.9 Weakly correlated
263 LTR16A 2 n.s 99.0 Highly correlated
264 LTR16D 2 * 99.0 Highly correlated
265 LTR16E2 2 n.s 99.0 Highly correlated
266 LTR19A 2 * 43.0 Weakly correlated
267 LTR33A_ 2 n.s 99.0 Highly correlated
268 LTR33B 2 n.s 99.0 Highly correlated
269 LTR41C 2 * 99.0 Highly correlated
270 LTR50 2 n.s 99.0 Highly correlated
271 LTR54B 2 * 74.0 Weakly correlated
272 LTR69 2 *** 99.0 Highly correlated
273 LTR6B 2 ** 19.6 Weakly correlated
274 LTR7A 2 **** 28.9 Weakly correlated
275 LTR81A 2 * 99.0 Highly correlated
276 LTR82B 2 n.s 99.0 Highly correlated
277 LTR83 2 * 99.0 Highly correlated
278 LTR8A 2 n.s 43.0 Weakly correlated
279 MER101B 2 ** 87.0 Weakly correlated
280 MER11B 2 n.s 19.6 Weakly correlated
281 MER21A 2 n.s 74.0 Weakly correlated
282 MER31-int 2 n.s 99.0 Highly correlated
283 MER34A 2 n.s 99.0 Highly correlated
284 MER34C2 2 * 74.0 Weakly correlated
285 MER41A 2 n.s 74.0 Weakly correlated
286 MER4B 2 n.s 74.0 Weakly correlated
287 MER4D1 2 n.s 74.0 Weakly correlated
288 MER50B 2 n.s 43.0 Weakly correlated
289 MER51-int 2 n.s 43.0 Weakly correlated
290 MER52A 2 n.s 74.0 Weakly correlated
291 MER54A 2 n.s 87.0 Weakly correlated
292 MER57B2 2 n.s 43.0 Weakly correlated
293 MER68B 2 ** 99.0 Highly correlated
294 MER77B 2 n.s 99.0 Highly correlated
295 MER92B 2 * 99.0 Highly correlated
296 MLT1M 2 n.s 99.0 Highly correlated
297 MST-int 2 ** 74.0 Weakly correlated
298 MSTC 2 n.s 74.0 Weakly correlated
299 MamGypLTR2c 2 * 99.0 Highly correlated
300 MamGypLTR3a 2 n.s 99.0 Highly correlated
301 THE1A 2 n.s 43.0 Weakly correlated
302 THE1C-int 2 n.s 43.0 Weakly correlated
303 AluSq4 1 n.s 74.0 Weakly correlated
304 AluYa5 1 n.s 15.2 Weakly correlated
305 AluYa8 1 ** 15.2 Weakly correlated
306 AluYb8 1 n.s 15.2 Weakly correlated
307 AluYe6 1 * 74.0 Weakly correlated
308 AluYh9 1 *** 15.2 Weakly correlated
309 AluYk3 1 n.s 19.6 Weakly correlated
310 CR1-L3A_Croc 1 ** 319.0 Weakly correlated
311 CR1_Mam 1 n.s 99.0 Highly correlated
312 ERV24B_Prim-int 1 n.s 74.0 Weakly correlated
313 ERV24_Prim-int 1 n.s 74.0 Weakly correlated
314 HERV15-int 1 n.s 28.9 Weakly correlated
315 HERV1_I-int 1 * 43.0 Weakly correlated
316 HERV30-int 1 * 28.9 Weakly correlated
317 HERV35I-int 1 n.s 43.0 Weakly correlated
318 HERV4_I-int 1 n.s 43.0 Weakly correlated
319 HERV9N-int 1 n.s 19.6 Weakly correlated
320 HERVE-int 1 n.s 19.6 Weakly correlated
321 HERVFH19-int 1 * 43.0 Weakly correlated
322 HERVK-int 1 n.s 28.9 Weakly correlated
323 HERVK13-int 1 * 19.6 Weakly correlated
324 HERVK3-int 1 n.s 28.9 Weakly correlated
325 HERVL18-int 1 n.s 43.0 Weakly correlated
326 HERVL40-int 1 n.s 99.0 Highly correlated
327 HERVL74-int 1 n.s 99.0 Highly correlated
328 HERVP71A-int 1 n.s 43.0 Weakly correlated
329 HUERS-P1-int 1 n.s 43.0 Weakly correlated
330 HUERS-P3b-int 1 n.s 43.0 Weakly correlated
331 L1HS 1 n.s 8.6 Weakly correlated
332 L1M3d 1 n.s 99.0 Highly correlated
333 L1M3de 1 n.s 99.0 Highly correlated
334 L1M3e 1 n.s 99.0 Highly correlated
335 L2-1_AMi 1 n.s 319.0 Weakly correlated
336 L2-3_Crp 1 n.s 431.0 Weakly correlated
337 L5 1 n.s 99.0 Highly correlated
338 LFSINE_Vert 1 n.s 319.0 Weakly correlated
339 LOR1a 1 n.s 74.0 Weakly correlated
340 LTR104_Mam 1 n.s 99.0 Highly correlated
341 LTR10B 1 ** 28.9 Weakly correlated
342 LTR10B2 1 ** 28.9 Weakly correlated
343 LTR12D 1 n.s 19.6 Weakly correlated
344 LTR12E 1 n.s 19.6 Weakly correlated
345 LTR16A2 1 n.s 99.0 Highly correlated
346 LTR16B 1 n.s 99.0 Highly correlated
347 LTR16B1 1 n.s 99.0 Highly correlated
348 LTR16D2 1 * 99.0 Highly correlated
349 LTR16E1 1 n.s 99.0 Highly correlated
350 LTR17 1 n.s 28.9 Weakly correlated
351 LTR18B 1 n.s 43.0 Weakly correlated
352 LTR19B 1 * 43.0 Weakly correlated
353 LTR19C 1 * 43.0 Weakly correlated
354 LTR1C1 1 ** 43.0 Weakly correlated
355 LTR21A 1 ** 28.9 Weakly correlated
356 LTR22C2 1 ** 28.9 Weakly correlated
357 LTR23 1 n.s 74.0 Weakly correlated
358 LTR25-int 1 n.s 43.0 Weakly correlated
359 LTR28B 1 n.s 43.0 Weakly correlated
360 LTR3 1 ** 28.9 Weakly correlated
361 LTR33A 1 n.s 99.0 Highly correlated
362 LTR33C 1 n.s 99.0 Highly correlated
363 LTR35B 1 * 43.0 Weakly correlated
364 LTR37B 1 n.s 99.0 Highly correlated
365 LTR39 1 n.s 43.0 Weakly correlated
366 LTR39-int 1 * 43.0 Weakly correlated
367 LTR3A 1 * 28.9 Weakly correlated
368 LTR40A1 1 n.s 99.0 Highly correlated
369 LTR40b 1 n.s 99.0 Highly correlated
370 LTR43B 1 * 74.0 Weakly correlated
371 LTR46 1 * 43.0 Weakly correlated
372 LTR47B2 1 * 74.0 Weakly correlated
373 LTR48B 1 n.s 74.0 Weakly correlated
374 LTR49 1 n.s 74.0 Weakly correlated
375 LTR52-int 1 * 99.0 Highly correlated
376 LTR56 1 n.s 74.0 Weakly correlated
377 LTR64 1 * 74.0 Weakly correlated
378 LTR68 1 * 99.0 Highly correlated
379 LTR7 1 n.s 19.6 Weakly correlated
380 LTR72B 1 ** 74.0 Weakly correlated
381 LTR75B 1 * 99.0 Highly correlated
382 LTR8 1 n.s 43.0 Weakly correlated
383 LTR81 1 * 99.0 Highly correlated
384 LTR81AB 1 ** 99.0 Highly correlated
385 LTR81B 1 n.s 99.0 Highly correlated
386 LTR84a 1 n.s 99.0 Highly correlated
387 LTR85a 1 n.s 99.0 Highly correlated
388 LTR85b 1 n.s 99.0 Highly correlated
389 LTR88b 1 n.s 99.0 Highly correlated
390 LTR88c 1 n.s 99.0 Highly correlated
391 LTR9B 1 n.s 43.0 Weakly correlated
392 MER11D 1 n.s 19.6 Weakly correlated
393 MER129 1 ** 319.0 Weakly correlated
394 MER34 1 n.s 87.0 Weakly correlated
395 MER34A1 1 n.s 99.0 Highly correlated
396 MER34D 1 * 74.0 Weakly correlated
397 MER39B 1 n.s 74.0 Weakly correlated
398 MER41B 1 n.s 74.0 Weakly correlated
399 MER41D 1 n.s 74.0 Weakly correlated
400 MER49 1 n.s 43.0 Weakly correlated
401 MER4A1 1 n.s 74.0 Weakly correlated
402 MER4A1_ 1 n.s 74.0 Weakly correlated
403 MER50-int 1 n.s 43.0 Weakly correlated
404 MER50C 1 ** 43.0 Weakly correlated
405 MER51A 1 n.s 43.0 Weakly correlated
406 MER51D 1 ** 43.0 Weakly correlated
407 MER52C 1 n.s 74.0 Weakly correlated
408 MER52D 1 n.s 74.0 Weakly correlated
409 MER54B 1 n.s 87.0 Weakly correlated
410 MER57A-int 1 n.s 43.0 Weakly correlated
411 MER57B1 1 n.s 43.0 Weakly correlated
412 MER57E2 1 ** 87.0 Weakly correlated
413 MER57F 1 * 74.0 Weakly correlated
414 MER61B 1 n.s 43.0 Weakly correlated
415 MER61E 1 * 43.0 Weakly correlated
416 MER66-int 1 n.s 43.0 Weakly correlated
417 MER68-int 1 n.s 99.0 Highly correlated
418 MER72 1 n.s 43.0 Weakly correlated
419 MER72B 1 * 43.0 Weakly correlated
420 MER74A 1 n.s 99.0 Highly correlated
421 MER74B 1 n.s 99.0 Highly correlated
422 MER83B 1 ** 43.0 Weakly correlated
423 MER87B 1 * 74.0 Weakly correlated
424 MER89-int 1 n.s 99.0 Highly correlated
425 MER9a2 1 n.s 19.6 Weakly correlated
426 MER9a3 1 n.s 28.9 Weakly correlated
427 MLT1C-int 1 n.s 94.0 Weakly correlated
428 MLT1E 1 n.s 99.0 Highly correlated
429 MLT1E3 1 n.s 99.0 Highly correlated
430 MLT1F1-int 1 * 99.0 Highly correlated
431 MLT1G 1 n.s 99.0 Highly correlated
432 MLT1G1-int 1 n.s 99.0 Highly correlated
433 MLT1G3-int 1 * 99.0 Highly correlated
434 MLT1H1-int 1 n.s 99.0 Highly correlated
435 MLT1I-int 1 n.s 99.0 Highly correlated
436 MLT1J-int 1 n.s 99.0 Highly correlated
437 MLT1J2-int 1 n.s 99.0 Highly correlated
438 MLT2A1 1 n.s 74.0 Weakly correlated
439 MLT2B2 1 n.s 99.0 Highly correlated
440 MLT2B4 1 n.s 99.0 Highly correlated
441 MLT2B5 1 * 87.0 Weakly correlated
442 MSTA-int 1 n.s 43.0 Weakly correlated
443 MSTA1 1 n.s 74.0 Weakly correlated
444 MSTB1-int 1 n.s 74.0 Weakly correlated
445 MSTB2-int 1 * 74.0 Weakly correlated
446 MamGyp-int 1 n.s 99.0 Highly correlated
447 MamGypLTR1a 1 n.s 99.0 Highly correlated
448 MamGypLTR1b 1 n.s 99.0 Highly correlated
449 MamGypLTR1c 1 n.s 99.0 Highly correlated
450 MamRep1151 1 n.s 99.0 Highly correlated
451 PABL_A-int 1 n.s 74.0 Weakly correlated
452 PRIMA4-int 1 n.s 74.0 Weakly correlated
453 PRIMA41-int 1 n.s 74.0 Weakly correlated
454 Plat_L3 1 n.s 99.0 Highly correlated
455 THE1A-int 1 n.s 43.0 Weakly correlated
456 THE1B-int 1 n.s 43.0 Weakly correlated
457 THE1D-int 1 n.s 28.9 Weakly correlated
458 X9_LINE 1 * 319.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1MEc 183 **** 99.0 Highly correlated
2 L1MEf 138 **** 99.0 Highly correlated
3 L1MEg 123 **** 99.0 Highly correlated
4 L1MC4 85 **** 99.0 Highly correlated
5 L1ME1 77 **** 99.0 Highly correlated
6 L1MEd 69 **** 99.0 Highly correlated
7 L1MCa 63 **** 99.0 Highly correlated
8 L1M7 55 **** 99.0 Highly correlated
9 HAL1M8 54 **** 99.0 Highly correlated
10 L1M4 54 **** 99.0 Highly correlated
11 MIRb 54 n.s 99.0 Highly correlated
12 HAL1 50 **** 99.0 Highly correlated
13 L1M8 46 **** 99.0 Highly correlated
14 L2a 46 n.s 99.0 Highly correlated
15 L2c 45 n.s 99.0 Highly correlated
16 L1PB1 42 n.s 74.0 Weakly correlated
17 L1PA16 35 n.s 74.0 Weakly correlated
18 L2b 35 n.s 99.0 Highly correlated
19 HAL1b 32 **** 99.0 Highly correlated
20 L1M4a1 32 **** 99.0 Highly correlated
21 L1MB7 28 n.s 99.0 Highly correlated
22 L1M4b 26 **** 99.0 Highly correlated
23 L1MCc 26 **** 99.0 Highly correlated
24 MIR 24 n.s 99.0 Highly correlated
25 L1M5 23 n.s 99.0 Highly correlated
26 MSTA 22 n.s 43.0 Weakly correlated
27 L2 21 n.s 99.0 Highly correlated
28 L1MA4 19 n.s 87.0 Weakly correlated
29 L1MA3 18 n.s 74.0 Weakly correlated
30 L1MC1 18 n.s 99.0 Highly correlated
31 L1ME2 18 n.s 99.0 Highly correlated
32 L1ME4a 18 n.s 99.0 Highly correlated
33 L1PB4 18 * 99.0 Highly correlated
34 L1PBa 18 *** 74.0 Weakly correlated
35 L1M1 17 n.s 74.0 Weakly correlated
36 L1M4a2 17 **** 99.0 Highly correlated
37 L1MA10 17 **** 99.0 Highly correlated
38 L1MA2 16 n.s 74.0 Weakly correlated
39 L1MB4 15 n.s 99.0 Highly correlated
40 L1MC2 15 * 99.0 Highly correlated
41 L1ME3A 15 n.s 99.0 Highly correlated
42 L3 15 n.s 99.0 Highly correlated
43 MIRc 15 n.s 99.0 Highly correlated
44 L1MB5 14 n.s 99.0 Highly correlated
45 L1MD2 14 n.s 99.0 Highly correlated
46 L1PB2 14 ** 74.0 Weakly correlated
47 L1MC5 13 n.s 99.0 Highly correlated
48 L1MCb 13 **** 99.0 Highly correlated
49 L1MB3 12 n.s 99.0 Highly correlated
50 L1MB8 12 n.s 99.0 Highly correlated
51 L1MD1 12 n.s 99.0 Highly correlated
52 L1MDa 12 n.s 99.0 Highly correlated
53 L1ME3 12 n.s 99.0 Highly correlated
54 L1PA15 12 n.s 74.0 Weakly correlated
55 L1PREC2 12 n.s 43.0 Weakly correlated
56 L1MC4a 11 n.s 99.0 Highly correlated
57 L1ME2z 11 * 99.0 Highly correlated
58 L1MEb 11 **** 99.0 Highly correlated
59 L1PA4 11 n.s 19.6 Weakly correlated
60 L1ME3G 9 n.s 99.0 Highly correlated
61 L1ME4b 9 n.s 99.0 Highly correlated
62 L1PA17 9 n.s 74.0 Weakly correlated
63 L1PB3 9 n.s 74.0 Weakly correlated
64 ERV3-16A3_I-int 8 n.s 99.0 Highly correlated
65 L1MA9 8 n.s 99.0 Highly correlated
66 L1ME3B 8 n.s 99.0 Highly correlated
67 L1PA13 8 n.s 74.0 Weakly correlated
68 MER39 8 ** 74.0 Weakly correlated
69 MLT1C 8 n.s 94.0 Weakly correlated
70 L1M6 7 n.s 99.0 Highly correlated
71 L1MC3 7 n.s 99.0 Highly correlated
72 L1ME3Cz 7 n.s 99.0 Highly correlated
73 L1MEi 7 n.s 99.0 Highly correlated
74 L1PA14 7 n.s 74.0 Weakly correlated
75 AluJb 6 n.s 74.0 Weakly correlated
76 HAL1ME 6 n.s 99.0 Highly correlated
77 L1M2 6 n.s 99.0 Highly correlated
78 L1MA1 6 n.s 74.0 Weakly correlated
79 L1MA7 6 n.s 87.0 Weakly correlated
80 L1PA5 6 n.s 19.6 Weakly correlated
81 MIR3 6 n.s 99.0 Highly correlated
82 MLT1H 6 n.s 99.0 Highly correlated
83 MLT1K 6 n.s 99.0 Highly correlated
84 MSTB 6 n.s 43.0 Weakly correlated
85 THE1D 6 n.s 43.0 Weakly correlated
86 ERVL-B4-int 5 n.s 99.0 Highly correlated
87 ERVL-E-int 5 n.s 99.0 Highly correlated
88 Harlequin-int 5 * 74.0 Weakly correlated
89 L1MA4A 5 n.s 87.0 Weakly correlated
90 L1MB1 5 n.s 99.0 Highly correlated
91 L1P4 5 n.s 74.0 Weakly correlated
92 LTR28C 5 **** 43.0 Weakly correlated
93 MLT1B 5 n.s 99.0 Highly correlated
94 AluJo 4 n.s 74.0 Weakly correlated
95 L1M3f 4 * 87.0 Weakly correlated
96 L1M4c 4 n.s 99.0 Highly correlated
97 L1MA5 4 n.s 87.0 Weakly correlated
98 L1MB2 4 n.s 99.0 Highly correlated
99 L1MC5a 4 n.s 99.0 Highly correlated
100 L1MD 4 n.s 99.0 Highly correlated
101 L1MD3 4 n.s 99.0 Highly correlated
102 L1ME3D 4 n.s 99.0 Highly correlated
103 L1PA6 4 n.s 28.9 Weakly correlated
104 MER4A 4 ** 74.0 Weakly correlated
105 MLT1A0 4 n.s 99.0 Highly correlated
106 MamSINE1 4 * 99.0 Highly correlated
107 HERVL-int 3 n.s 74.0 Weakly correlated
108 L1MA5A 3 n.s 87.0 Weakly correlated
109 L1ME3C 3 n.s 99.0 Highly correlated
110 L1ME3E 3 n.s 99.0 Highly correlated
111 L1ME4c 3 n.s 99.0 Highly correlated
112 L1ME5 3 n.s 99.0 Highly correlated
113 L1MEg2 3 ** 99.0 Highly correlated
114 L1PA10 3 n.s 74.0 Weakly correlated
115 L1PA7 3 n.s 74.0 Weakly correlated
116 LOR1-int 3 n.s 74.0 Weakly correlated
117 LTR16A1 3 n.s 99.0 Highly correlated
118 LTR37A 3 * 99.0 Highly correlated
119 MLT1E1A 3 n.s 99.0 Highly correlated
120 MLT1F 3 n.s 99.0 Highly correlated
121 MLT1F2 3 n.s 99.0 Highly correlated
122 MLT1I 3 n.s 99.0 Highly correlated
123 Mam_R4 3 *** 99.0 Highly correlated
124 THE1B 3 n.s 43.0 Weakly correlated
125 THE1C 3 n.s 43.0 Weakly correlated
126 AluSz 2 n.s 74.0 Weakly correlated
127 ERV3-16A3_LTR 2 * 99.0 Highly correlated
128 HERV16-int 2 n.s 99.0 Highly correlated
129 HERVIP10B3-int 2 n.s 28.9 Weakly correlated
130 L1M3c 2 n.s 99.0 Highly correlated
131 L1MA8 2 n.s 87.0 Weakly correlated
132 L1ME3F 2 n.s 99.0 Highly correlated
133 L1MEa 2 ** 99.0 Highly correlated
134 L1MEj 2 n.s 99.0 Highly correlated
135 L1P1 2 n.s 19.6 Weakly correlated
136 L1PA12 2 n.s 74.0 Weakly correlated
137 L1PA15-16 2 n.s 74.0 Weakly correlated
138 L1PA8 2 n.s 74.0 Weakly correlated
139 L1PBb 2 n.s 74.0 Weakly correlated
140 LTR16 2 n.s 99.0 Highly correlated
141 LTR16C 2 n.s 99.0 Highly correlated
142 LTR37-int 2 n.s 99.0 Highly correlated
143 LTR41C 2 * 99.0 Highly correlated
144 LTR52 2 n.s 99.0 Highly correlated
145 LTR67B 2 n.s 99.0 Highly correlated
146 LTR88a 2 ** 99.0 Highly correlated
147 LTR8A 2 n.s 43.0 Weakly correlated
148 MER21A 2 n.s 74.0 Weakly correlated
149 MER21C 2 n.s 99.0 Highly correlated
150 MER31B 2 n.s 99.0 Highly correlated
151 MER34-int 2 * 99.0 Highly correlated
152 MER4B-int 2 n.s 99.0 Highly correlated
153 MER51-int 2 n.s 43.0 Weakly correlated
154 MLT1E1 2 n.s 99.0 Highly correlated
155 MLT1H2 2 n.s 99.0 Highly correlated
156 MLT1J 2 n.s 99.0 Highly correlated
157 MLT2C1 2 n.s 99.0 Highly correlated
158 MamGypsy2-I 2 n.s 99.0 Highly correlated
159 MamRTE1 2 n.s 99.0 Highly correlated
160 MLT1N2 2 n.s 99.0 Highly correlated
161 L1MEh 2 n.s 99.0 Highly correlated
162 AluJr 1 n.s 74.0 Weakly correlated
163 AluSx 1 n.s 74.0 Weakly correlated
164 AluSx1 1 n.s 74.0 Weakly correlated
165 AluSx3 1 n.s 74.0 Weakly correlated
166 AluSx4 1 n.s 74.0 Weakly correlated
167 AluY 1 n.s 74.0 Weakly correlated
168 HERV1_I-int 1 * 43.0 Weakly correlated
169 HERV30-int 1 * 28.9 Weakly correlated
170 HERVIP10FH-int 1 n.s 28.9 Weakly correlated
171 HERVL18-int 1 n.s 43.0 Weakly correlated
172 HERVL74-int 1 n.s 99.0 Highly correlated
173 HERVP71A-int 1 n.s 43.0 Weakly correlated
174 HUERS-P1-int 1 n.s 43.0 Weakly correlated
175 L1M3b 1 n.s 99.0 Highly correlated
176 L1M3de 1 n.s 99.0 Highly correlated
177 L1MA6 1 n.s 87.0 Weakly correlated
178 L1MEg1 1 n.s 99.0 Highly correlated
179 L1PA11 1 n.s 74.0 Weakly correlated
180 L1PA2 1 n.s 15.2 Weakly correlated
181 L1PA3 1 n.s 19.6 Weakly correlated
182 L3b 1 n.s 99.0 Highly correlated
183 L4_A_Mam 1 n.s 99.0 Highly correlated
184 L4_B_Mam 1 n.s 99.0 Highly correlated
185 L4_C_Mam 1 n.s 99.0 Highly correlated
186 LFSINE_Vert 1 n.s 319.0 Weakly correlated
187 LTR102_Mam 1 n.s 99.0 Highly correlated
188 LTR10B1 1 * 28.9 Weakly correlated
189 LTR12 1 n.s 28.9 Weakly correlated
190 LTR12C 1 n.s 19.6 Weakly correlated
191 LTR16D2 1 * 99.0 Highly correlated
192 LTR19C 1 * 43.0 Weakly correlated
193 LTR1A2 1 n.s 43.0 Weakly correlated
194 LTR23 1 n.s 74.0 Weakly correlated
195 LTR28B 1 n.s 43.0 Weakly correlated
196 LTR33A 1 n.s 99.0 Highly correlated
197 LTR41 1 n.s 99.0 Highly correlated
198 LTR41B 1 n.s 99.0 Highly correlated
199 LTR43B 1 * 74.0 Weakly correlated
200 LTR52-int 1 * 99.0 Highly correlated
201 LTR53-int 1 n.s 99.0 Highly correlated
202 LTR75 1 * 99.0 Highly correlated
203 LTR83 1 n.s 99.0 Highly correlated
204 LTR84a 1 n.s 99.0 Highly correlated
205 LTR85a 1 n.s 99.0 Highly correlated
206 LTR89 1 n.s 99.0 Highly correlated
207 MER101B 1 * 87.0 Weakly correlated
208 MER21B 1 n.s 99.0 Highly correlated
209 MER31-int 1 n.s 99.0 Highly correlated
210 MER34D 1 * 74.0 Weakly correlated
211 MER4B 1 n.s 74.0 Weakly correlated
212 MER4D 1 n.s 74.0 Weakly correlated
213 MER52A 1 n.s 74.0 Weakly correlated
214 MER57-int 1 n.s 87.0 Weakly correlated
215 MER57A1 1 n.s 43.0 Weakly correlated
216 MER66-int 1 n.s 43.0 Weakly correlated
217 MER70C 1 * 99.0 Highly correlated
218 MER72 1 n.s 43.0 Weakly correlated
219 MER72B 1 * 43.0 Weakly correlated
220 MER90a 1 n.s 99.0 Highly correlated
221 MLT1A 1 n.s 99.0 Highly correlated
222 MLT1A1 1 n.s 87.0 Weakly correlated
223 MLT1C-int 1 n.s 94.0 Weakly correlated
224 MLT1E 1 n.s 99.0 Highly correlated
225 MLT1F1 1 n.s 99.0 Highly correlated
226 MLT1G1-int 1 n.s 99.0 Highly correlated
227 MLT1G3 1 n.s 99.0 Highly correlated
228 MLT1J1 1 n.s 99.0 Highly correlated
229 MLT1J2 1 n.s 99.0 Highly correlated
230 MLT1M 1 n.s 99.0 Highly correlated
231 MLT1O 1 n.s 99.0 Highly correlated
232 MLT2A1 1 n.s 74.0 Weakly correlated
233 MLT2B1 1 n.s 99.0 Highly correlated
234 MLT2B3 1 n.s 99.0 Highly correlated
235 MLT2B5 1 * 87.0 Weakly correlated
236 MLT2D 1 n.s 99.0 Highly correlated
237 MamGypLTR1b 1 n.s 99.0 Highly correlated
238 MamGypLTR1c 1 n.s 99.0 Highly correlated
239 PABL_A-int 1 n.s 74.0 Weakly correlated
240 PRIMA41-int 1 n.s 74.0 Weakly correlated
241 LTR16A 1 n.s 99.0 Highly correlated
242 LTR33B 1 n.s 99.0 Highly correlated
243 LTR72B 1 ** 74.0 Weakly correlated
244 LTR78 1 n.s 99.0 Highly correlated
245 MamRep605 1 n.s 99.0 Highly correlated
246 LTR7 1 n.s 19.6 Weakly correlated
247 MER57E2 1 ** 87.0 Weakly correlated
248 MLT1L 1 n.s 99.0 Highly correlated
249 HERV9NC-int 1 n.s 19.6 Weakly correlated
250 L1MC 1 n.s 99.0 Highly correlated
251 MER129 1 ** 319.0 Weakly correlated
252 MER68-int 1 n.s 99.0 Highly correlated
253 MamRep1527 1 n.s 99.0 Highly correlated
254 L1M6B 1 * 99.0 Highly correlated
255 L1P2 1 n.s 28.9 Weakly correlated
256 L1P4a 1 n.s 74.0 Weakly correlated
257 LTR55 1 n.s 99.0 Highly correlated
258 MLT1J2-int 1 n.s 99.0 Highly correlated
259 MLT2B4 1 n.s 99.0 Highly correlated
260 MST-int 1 * 74.0 Weakly correlated
261 MSTD 1 n.s 74.0 Weakly correlated
262 MLT1F1-int 1 * 99.0 Highly correlated
263 LTR25-int 1 n.s 43.0 Weakly correlated
264 MER41B 1 n.s 74.0 Weakly correlated
265 MER68 1 n.s 99.0 Highly correlated
266 LTR16A2 1 n.s 99.0 Highly correlated
267 MIR1_Amn 1 n.s 319.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 HAL1 99.0 Highly correlated
2 HAL1M8 99.0 Highly correlated
3 HAL1ME 99.0 Highly correlated
4 HAL1B 99.0 Highly correlated
5 L1M1 74.0 Weakly correlated
6 L1M4 99.0 Highly correlated
7 L1M4A1 99.0 Highly correlated
8 L1M4A2 99.0 Highly correlated
9 L1M4B 99.0 Highly correlated
10 L1M7 99.0 Highly correlated
11 L1M8 99.0 Highly correlated
12 L1MA2 74.0 Weakly correlated
13 L1MA3 74.0 Weakly correlated
14 L1MA7 87.0 Weakly correlated
15 L1MC3 99.0 Highly correlated
16 L1MCB 99.0 Highly correlated
17 L1MD1 99.0 Highly correlated
18 L1ME3CZ 99.0 Highly correlated
19 L1ME4B 99.0 Highly correlated
20 L1MEB 99.0 Highly correlated
21 L1MEC 99.0 Highly correlated
22 L1MED 99.0 Highly correlated
23 L1MEF 99.0 Highly correlated
24 L1MEG 99.0 Highly correlated
25 L1MEI 99.0 Highly correlated
26 L1PBA 74.0 Weakly correlated