ZRdb KZFP & Repeats
...

Human_ZNF114

  • Protein
    Zinc finger protein 114
  • Length
    417
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    28.9 Mya
  • Time of Changing in binding specificity
    28.9 Mya
  • Uniprot_ID
  • NCBI_ID
Sequence:
MSQDSVTFADVAVNFTKEEWTLLDPAQRNLYRDVMLENSRNLAFIDWATPCKTKDATPQPDILPKRTFPEANRVCLTSISSQHSTLREDWRCPKTEEPHRQGVNNVKPPAVAPEKDESPVSICEDHEMRNHSKPTCRLVPSQGDSIRQCILTRDSSIFKYNPVLNDSQKTHENNEDDGVLGWNIQWVPCGRKTELKSSTWTGSQNTVHHIRDEIDTGANRHQRNPFGKAFREDGSLRAHNTHGREKMYDFTQCENTSRNNSIHAMQMQLYTAETNKKDCQTGATSANAPNSGSHKSHCTGEKTHKCPECGRAFFYQSFLMRHMKIHTGEKPYECGKCGKAFRYSLHLNKHLRKHVVQKKPYECEECGKVIRESSKYTHIRSHTGEKPYKCKTCGKDFAKSSGLKKHLKTHKDEKPCE
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 6..85
2 C2h2 304..326
3 C2h2 332..354
4 C2h2 361..382
5 C2h2 388..410
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component extracellular exosome
2 Cellular Component nucleus
3 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
4 Molecular Function identical protein binding
5 Molecular Function metal ion binding
6 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
7 Biological Process regulation of DNA-templated transcription
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
...
Reverse:
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 MER52A 59 **** 74.0 Weakly correlated
2 LTR12C 44 **** 19.6 Weakly correlated
3 MER52D 21 **** 74.0 Weakly correlated
4 L1PA13 14 *** 74.0 Weakly correlated
5 L2a 12 n.s 99.0 Weakly correlated
6 L2c 11 n.s 99.0 Weakly correlated
7 AluJb 10 n.s 74.0 Weakly correlated
8 L1PA10 10 * 74.0 Weakly correlated
9 L2b 10 n.s 99.0 Weakly correlated
10 AluSc8 8 * 74.0 Weakly correlated
11 L1PA15 8 n.s 74.0 Weakly correlated
12 LTR12E 8 **** 19.6 Weakly correlated
13 MER50 8 **** 43.0 Moderately correlated
14 L1MA4A 7 * 87.0 Weakly correlated
15 L1MA8 7 n.s 87.0 Weakly correlated
16 LTR10A 7 **** 28.9 Highly correlated
17 LTR8 7 **** 43.0 Moderately correlated
18 MER52C 7 **** 74.0 Weakly correlated
19 L1M2 6 n.s 99.0 Weakly correlated
20 L1M3e 6 **** 99.0 Weakly correlated
21 MIR 6 n.s 99.0 Weakly correlated
22 L1PA16 5 n.s 74.0 Weakly correlated
23 L1PB4 5 n.s 99.0 Weakly correlated
24 L1PREC2 5 n.s 43.0 Moderately correlated
25 LTR12D 5 **** 19.6 Weakly correlated
26 MIRb 5 n.s 99.0 Weakly correlated
27 THE1D-int 5 ** 28.9 Highly correlated
28 L1M1 4 n.s 74.0 Weakly correlated
29 L1MEf 4 n.s 99.0 Weakly correlated
30 L1P3 4 n.s 74.0 Weakly correlated
31 L2 4 n.s 99.0 Weakly correlated
32 LTR2752 4 **** 43.0 Moderately correlated
33 MIRc 4 n.s 99.0 Weakly correlated
34 MLT1L 4 * 99.0 Weakly correlated
35 AluSx1 3 n.s 74.0 Weakly correlated
36 L1M2b 3 **** 87.0 Weakly correlated
37 L1MA4 3 n.s 87.0 Weakly correlated
38 L1P4a 3 ** 74.0 Weakly correlated
39 L1PA15-16 3 * 74.0 Weakly correlated
40 L1PA5 3 n.s 19.6 Weakly correlated
41 L1PB1 3 n.s 74.0 Weakly correlated
42 LTR1D 3 **** 43.0 Moderately correlated
43 LTR33A 3 *** 99.0 Weakly correlated
44 MSTB-int 3 ** 43.0 Moderately correlated
45 SVA_B 3 *** 15.2 Weakly correlated
46 AluJo 2 n.s 74.0 Weakly correlated
47 AluSx 2 n.s 74.0 Weakly correlated
48 AluYh9 2 **** 15.2 Weakly correlated
49 FRAM 2 * 74.0 Weakly correlated
50 L1M3a 2 ** 99.0 Weakly correlated
51 L1MA1 2 n.s 74.0 Weakly correlated
52 L1MA2 2 n.s 74.0 Weakly correlated
53 L1MA5 2 n.s 87.0 Weakly correlated
54 L1MA9 2 n.s 99.0 Weakly correlated
55 L1MB3 2 n.s 99.0 Weakly correlated
56 L1MCb 2 n.s 99.0 Weakly correlated
57 L1MCc 2 n.s 99.0 Weakly correlated
58 L1MDa 2 n.s 99.0 Weakly correlated
59 L1ME3G 2 n.s 99.0 Weakly correlated
60 L1P4b 2 *** 74.0 Weakly correlated
61 L1PA14 2 n.s 74.0 Weakly correlated
62 L1PA17 2 n.s 74.0 Weakly correlated
63 L1PA2 2 n.s 15.2 Weakly correlated
64 L1PA4 2 n.s 19.6 Weakly correlated
65 L1PA6 2 n.s 28.9 Highly correlated
66 L1PA8 2 n.s 74.0 Weakly correlated
67 L3 2 n.s 99.0 Weakly correlated
68 LTR1A2 2 ** 43.0 Moderately correlated
69 LTR27E 2 *** 43.0 Moderately correlated
70 LTR28C 2 *** 43.0 Moderately correlated
71 LTR83 2 *** 99.0 Weakly correlated
72 MLT1C 2 n.s 94.0 Weakly correlated
73 MSTA 2 n.s 43.0 Moderately correlated
74 MSTA-int 2 n.s 43.0 Moderately correlated
75 MamRTE1 2 n.s 99.0 Weakly correlated
76 Alu 1 * 74.0 Weakly correlated
77 AluJr4 1 n.s 74.0 Weakly correlated
78 AluSp 1 n.s 74.0 Weakly correlated
79 AluSz6 1 n.s 74.0 Weakly correlated
80 AluY 1 n.s 74.0 Weakly correlated
81 AluYj4 1 n.s 0.0 Weakly correlated
82 AluYm1 1 n.s 19.6 Weakly correlated
83 HAL1 1 n.s 99.0 Weakly correlated
84 HERV3-int 1 * 28.9 Highly correlated
85 HERVL18-int 1 * 43.0 Moderately correlated
86 L1M2a 1 * 87.0 Weakly correlated
87 L1M2a1 1 ** 79.0 Weakly correlated
88 L1M2c 1 * 87.0 Weakly correlated
89 L1M4 1 n.s 99.0 Weakly correlated
90 L1M4c 1 n.s 99.0 Weakly correlated
91 L1MA10 1 n.s 99.0 Weakly correlated
92 L1MA7 1 n.s 87.0 Weakly correlated
93 L1MB8 1 n.s 99.0 Weakly correlated
94 L1ME4b 1 n.s 99.0 Weakly correlated
95 L1P1 1 n.s 19.6 Weakly correlated
96 L1P3b 1 *** 43.0 Moderately correlated
97 L1P4 1 n.s 74.0 Weakly correlated
98 L1P4e 1 ** 74.0 Weakly correlated
99 L1PA11 1 n.s 74.0 Weakly correlated
100 L1PA12 1 n.s 74.0 Weakly correlated
101 L1PA8A 1 n.s 74.0 Weakly correlated
102 L1PBa 1 n.s 74.0 Weakly correlated
103 L1PBb 1 * 74.0 Weakly correlated
104 L2-1_AMi 1 ** 319.0 Weakly correlated
105 L4_A_Mam 1 n.s 99.0 Weakly correlated
106 LTR10B1 1 *** 28.9 Highly correlated
107 LTR13 1 * 19.6 Weakly correlated
108 LTR13A 1 ** 28.9 Highly correlated
109 LTR16A 1 n.s 99.0 Weakly correlated
110 LTR16B2 1 n.s 99.0 Weakly correlated
111 LTR16D 1 * 99.0 Weakly correlated
112 LTR16D2 1 ** 99.0 Weakly correlated
113 LTR16E1 1 n.s 99.0 Weakly correlated
114 LTR16E2 1 n.s 99.0 Weakly correlated
115 LTR1C1 1 *** 43.0 Moderately correlated
116 LTR33 1 n.s 99.0 Weakly correlated
117 LTR41B 1 * 99.0 Weakly correlated
118 LTR41C 1 * 99.0 Weakly correlated
119 LTR50 1 n.s 99.0 Weakly correlated
120 LTR51 1 ** 74.0 Weakly correlated
121 MER39B 1 * 74.0 Weakly correlated
122 MER50-int 1 * 43.0 Moderately correlated
123 MER70C 1 ** 99.0 Weakly correlated
124 MER88 1 *** 99.0 Weakly correlated
125 MIR3 1 n.s 99.0 Weakly correlated
126 MLT1A-int 1 ** 99.0 Weakly correlated
127 MLT1A0-int 1 n.s 99.0 Weakly correlated
128 MLT1A1-int 1 * 87.0 Weakly correlated
129 MLT1B 1 n.s 99.0 Weakly correlated
130 MLT1H 1 n.s 99.0 Weakly correlated
131 MLT1H1 1 n.s 99.0 Weakly correlated
132 MLT1N2 1 n.s 99.0 Weakly correlated
133 MLT2C1 1 n.s 99.0 Weakly correlated
134 SVA_C 1 * 15.2 Weakly correlated
135 SVA_E 1 * 0.0 Weakly correlated
136 SVA_F 1 n.s 0.0 Weakly correlated
137 THE1A-int 1 n.s 43.0 Moderately correlated
138 THE1B 1 n.s 43.0 Moderately correlated
139 THE1B-int 1 n.s 43.0 Moderately correlated
140 THE1C-int 1 n.s 43.0 Moderately correlated
141 THE1D 1 n.s 43.0 Moderately correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1MA9 2 n.s 99.0 Weakly correlated
2 LTR27E 2 *** 43.0 Moderately correlated
3 AluJb 1 n.s 74.0 Weakly correlated
4 AluYh9 1 **** 15.2 Weakly correlated
5 L1MA2 1 n.s 74.0 Weakly correlated
6 L1PB4 1 n.s 99.0 Weakly correlated
7 LTR1C1 1 *** 43.0 Moderately correlated
8 L1PA8A 1 n.s 74.0 Weakly correlated
9 L2b 1 n.s 99.0 Weakly correlated
10 L1PA17 1 n.s 74.0 Weakly correlated
11 L4_A_Mam 1 n.s 99.0 Weakly correlated
12 L1PA11 1 n.s 74.0 Weakly correlated
13 LTR13 1 * 19.6 Weakly correlated
14 MER52A 1 n.s 74.0 Weakly correlated
15 L1PA5 1 n.s 19.6 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP