ZRdb KZFP & Repeats
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Human_ZFP28

  • Protein
    Zinc finger protein 28 homolog
  • Length
    868
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    99.0 Mya
  • Time of Changing in binding specificity
    99.0 Mya
  • Uniprot_ID
    Q8NHY6
  • NCBI_ID
    140612
Sequence:
MRGAASASVREPTPLPGRGAPRTKPRAGRGPTVGTPATLALPARGRPRSRNGLASKGQRGAAPTGPGHRALPSRDTALPQERNKKLEAVGTGIEPKAMSQGLVTFGDVAVDFSQEEWEWLNPIQRNLYRKVMLENYRNLASLGLCVSKPDVISSLEQGKEPWTVKRKMTRAWCPDLKAVWKIKELPLKKDFCEGKLSQAVITERLTSYNLEYSLLGEHWDYDALFETQPGLVTIKNLAVDFRQQLHPAQKNFCKNGIWENNSDLGSAGHCVAKPDLVSLLEQEKEPWMVKRELTGSLFSGQRSVHETQELFPKQDSYAEGVTDRTSNTKLDCSSFRENWDSDYVFGRKLAVGQETQFRQEPITHNKTLSKERERTYNKSGRWFYLDDSEEKVHNRDSIKNFQKSSVVIKQTGIYAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPYKCNECGKAFSDGSSFARHQRCHTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPFECAECGKSFSISSQLATHQRIHTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSYNYKKSRKVFRQTAHLAHHQRIHTGESSTCPSLPSTSNPVDLFPKFLWNPSSLPSP
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 103..174
2 C2h2 420..442
3 C2h2 448..470
4 C2h2 476..499
5 C2h2 505..527
6 C2h2 533..555
7 C2h2 561..583
8 C2h2 589..611
9 C2h2 617..639
10 C2h2 645..667
11 C2h2 673..695
12 C2h2 701..723
13 C2h2 729..751
14 C2h2 757..779
15 C2h2 785..807
16 dec2h2 813..835
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1M5 394 **** 99.0 Highly correlated
2 L1M4 191 **** 99.0 Highly correlated
3 L1ME1 161 **** 99.0 Highly correlated
4 L1MEc 114 **** 99.0 Highly correlated
5 L1MB7 106 **** 99.0 Highly correlated
6 L1MEd 102 **** 99.0 Highly correlated
7 L1ME2 88 **** 99.0 Highly correlated
8 L2a 88 *** 99.0 Highly correlated
9 L1MEg 84 **** 99.0 Highly correlated
10 MIRb 82 **** 99.0 Highly correlated
11 L1ME4a 65 **** 99.0 Highly correlated
12 L1MB8 64 **** 99.0 Highly correlated
13 L1MC 64 **** 99.0 Highly correlated
14 L1MEf 64 **** 99.0 Highly correlated
15 HAL1ME 62 **** 99.0 Highly correlated
16 L1MB5 59 **** 99.0 Highly correlated
17 MIR 57 ** 99.0 Highly correlated
18 AluY 55 n.s 74.0 Weakly correlated
19 AluJo 53 **** 74.0 Weakly correlated
20 L1ME3A 53 **** 99.0 Highly correlated
21 AluJb 50 n.s 74.0 Weakly correlated
22 AluSz 50 n.s 74.0 Weakly correlated
23 AluJr 48 *** 74.0 Weakly correlated
24 L1MB4 47 **** 99.0 Highly correlated
25 AluSx1 45 n.s 74.0 Weakly correlated
26 L2c 44 n.s 99.0 Highly correlated
27 MIRc 44 **** 99.0 Highly correlated
28 AluSx 43 n.s 74.0 Weakly correlated
29 L1MD 42 **** 99.0 Highly correlated
30 MIR3 41 **** 99.0 Highly correlated
31 L1M4b 36 **** 99.0 Highly correlated
32 L1MEi 36 **** 99.0 Highly correlated
33 L2 33 * 99.0 Highly correlated
34 AluSq2 32 n.s 74.0 Weakly correlated
35 L2b 32 n.s 99.0 Highly correlated
36 L1ME3B 30 **** 99.0 Highly correlated
37 L1MD2 28 **** 99.0 Highly correlated
38 AluSp 27 n.s 74.0 Weakly correlated
39 HAL1 27 **** 99.0 Highly correlated
40 L1MCa 26 **** 99.0 Highly correlated
41 MLT1K 26 **** 99.0 Highly correlated
42 L1MB3 25 **** 99.0 Highly correlated
43 L1MC4 22 ** 99.0 Highly correlated
44 L1MDa 21 **** 99.0 Highly correlated
45 L1ME3 20 **** 99.0 Highly correlated
46 L1ME3E 20 **** 99.0 Highly correlated
47 AluSx3 19 * 74.0 Weakly correlated
48 L1MA9 19 * 99.0 Highly correlated
49 L1MC1 19 * 99.0 Highly correlated
50 L1ME3D 19 **** 99.0 Highly correlated
51 L3 19 * 99.0 Highly correlated
52 AluSz6 16 n.s 74.0 Weakly correlated
53 L1ME3F 16 **** 99.0 Highly correlated
54 L1ME4b 16 ** 99.0 Highly correlated
55 L1ME2z 15 **** 99.0 Highly correlated
56 AluJr4 14 ** 74.0 Weakly correlated
57 L1M2 14 * 99.0 Highly correlated
58 L1M4c 14 **** 99.0 Highly correlated
59 L1MA8 14 * 87.0 Weakly correlated
60 L1MCc 14 **** 99.0 Highly correlated
61 L1ME3Cz 14 *** 99.0 Highly correlated
62 AluSg 13 n.s 74.0 Weakly correlated
63 L1MA4 13 n.s 87.0 Weakly correlated
64 L1MD3 13 **** 99.0 Highly correlated
65 L1M4a1 12 **** 99.0 Highly correlated
66 L1M7 12 **** 99.0 Highly correlated
67 L1ME3G 12 ** 99.0 Highly correlated
68 AluSc 11 n.s 74.0 Weakly correlated
69 L1MC3 11 n.s 99.0 Highly correlated
70 L1MC5a 11 n.s 99.0 Highly correlated
71 L1MEb 11 **** 99.0 Highly correlated
72 AluSc8 10 n.s 74.0 Weakly correlated
73 FLAM_A 10 **** 74.0 Weakly correlated
74 L1M3 10 ** 99.0 Highly correlated
75 L1M4a2 10 **** 99.0 Highly correlated
76 L1PB4 10 n.s 99.0 Highly correlated
77 L1MC2 9 * 99.0 Highly correlated
78 L1MC4a 9 n.s 99.0 Highly correlated
79 L1ME4c 9 *** 99.0 Highly correlated
80 L1PA16 9 n.s 74.0 Weakly correlated
81 AluSg7 8 * 74.0 Weakly correlated
82 FAM 8 **** 87.0 Weakly correlated
83 FLAM_C 8 * 74.0 Weakly correlated
84 L1MA5 8 * 87.0 Weakly correlated
85 MLT1H1 8 **** 99.0 Highly correlated
86 MLT1L 8 * 99.0 Highly correlated
87 AluSq 7 n.s 74.0 Weakly correlated
88 L1M1 7 n.s 74.0 Weakly correlated
89 L1MB1 7 n.s 99.0 Highly correlated
90 MLT1D 7 n.s 99.0 Highly correlated
91 MSTA 7 n.s 43.0 Weakly correlated
92 L1M6 6 ** 99.0 Highly correlated
93 L1MA7 6 n.s 87.0 Weakly correlated
94 L1MB2 6 n.s 99.0 Highly correlated
95 L1MC5 6 n.s 99.0 Highly correlated
96 L1MD1 6 n.s 99.0 Highly correlated
97 L1MEg1 6 **** 99.0 Highly correlated
98 L1PB3 6 n.s 74.0 Weakly correlated
99 LTR10A 6 **** 28.9 Weakly correlated
100 LTR16A 6 ** 99.0 Highly correlated
101 MER21C 6 n.s 99.0 Highly correlated
102 MLT1C 6 n.s 94.0 Weakly correlated
103 MLT1J 6 n.s 99.0 Highly correlated
104 MamRTE1 6 ** 99.0 Highly correlated
105 L1MDb 5 *** 99.0 Highly correlated
106 L1ME3C 5 ** 99.0 Highly correlated
107 L1MEh 5 ** 99.0 Highly correlated
108 L1P4 5 * 74.0 Weakly correlated
109 L1PA11 5 n.s 74.0 Weakly correlated
110 L1PREC2 5 n.s 43.0 Weakly correlated
111 L3b 5 * 99.0 Highly correlated
112 MLT1A 5 n.s 99.0 Highly correlated
113 MLT1A1 5 n.s 87.0 Weakly correlated
114 MLT1G3 5 ** 99.0 Highly correlated
115 MSTB 5 n.s 43.0 Weakly correlated
116 THE1B 5 n.s 43.0 Weakly correlated
117 AluSx4 4 n.s 74.0 Weakly correlated
118 AluYk11 4 **** 15.2 Weakly correlated
119 HAL1b 4 n.s 99.0 Highly correlated
120 L1M6B 4 **** 99.0 Highly correlated
121 L1MA10 4 n.s 99.0 Highly correlated
122 L1MA4A 4 n.s 87.0 Weakly correlated
123 L1PA13 4 n.s 74.0 Weakly correlated
124 L1PA4 4 n.s 19.6 Weakly correlated
125 LTR37-int 4 *** 99.0 Highly correlated
126 LTR47A 4 **** 74.0 Weakly correlated
127 MER66D 4 **** 43.0 Weakly correlated
128 MIR1_Amn 4 * 319.0 Weakly correlated
129 MLT1A0 4 n.s 99.0 Highly correlated
130 MLT1G1 4 * 99.0 Highly correlated
131 MLT1J1 4 * 99.0 Highly correlated
132 MLT1J2 4 n.s 99.0 Highly correlated
133 MSTB1 4 n.s 74.0 Weakly correlated
134 ERV3-16A3_I-int 3 n.s 99.0 Highly correlated
135 L1MA6 3 n.s 87.0 Weakly correlated
136 L1MCb 3 n.s 99.0 Highly correlated
137 L1MEa 3 **** 99.0 Highly correlated
138 L1PA15 3 n.s 74.0 Weakly correlated
139 L1PA3 3 n.s 19.6 Weakly correlated
140 L1PA5 3 n.s 19.6 Weakly correlated
141 LTR33 3 n.s 99.0 Highly correlated
142 MamRep1527 3 ** 99.0 Highly correlated
143 AluSg4 2 n.s 74.0 Weakly correlated
144 AluSq10 2 * 74.0 Weakly correlated
145 AluYj4 2 n.s 0.0 Weakly correlated
146 AluYk12 2 **** 15.2 Weakly correlated
147 ERV3-16A3_LTR 2 ** 99.0 Highly correlated
148 HAL1M8 2 n.s 99.0 Highly correlated
149 L1M2a 2 * 87.0 Weakly correlated
150 L1M3b 2 * 99.0 Highly correlated
151 L1M3c 2 n.s 99.0 Highly correlated
152 L1MA3 2 n.s 74.0 Weakly correlated
153 L1MA5A 2 n.s 87.0 Weakly correlated
154 L1MEg2 2 ** 99.0 Highly correlated
155 L1PA10 2 n.s 74.0 Weakly correlated
156 L1PA14 2 n.s 74.0 Weakly correlated
157 L1PA6 2 n.s 28.9 Weakly correlated
158 L1PA8 2 n.s 74.0 Weakly correlated
159 L1PA8A 2 n.s 74.0 Weakly correlated
160 L1PB 2 n.s 74.0 Weakly correlated
161 L2-3_Crp 2 * 431.0 Weakly correlated
162 L4_A_Mam 2 n.s 99.0 Highly correlated
163 LOR1-int 2 n.s 74.0 Weakly correlated
164 LTR103b_Mam 2 *** 99.0 Highly correlated
165 LTR16C 2 n.s 99.0 Highly correlated
166 LTR19B 2 *** 43.0 Weakly correlated
167 LTR33A_ 2 * 99.0 Highly correlated
168 LTR33C 2 ** 99.0 Highly correlated
169 LTR37A 2 * 99.0 Highly correlated
170 LTR40b 2 * 99.0 Highly correlated
171 LTR44 2 *** 74.0 Weakly correlated
172 LTR48B 2 * 74.0 Weakly correlated
173 LTR54 2 ** 74.0 Weakly correlated
174 LTR57-int 2 ** 74.0 Weakly correlated
175 LTR78 2 n.s 99.0 Highly correlated
176 LTR79 2 n.s 99.0 Highly correlated
177 LTR88b 2 ** 99.0 Highly correlated
178 LTR88c 2 ** 99.0 Highly correlated
179 MER31A 2 * 87.0 Weakly correlated
180 MER34C2 2 ** 74.0 Weakly correlated
181 MER41C 2 ** 74.0 Weakly correlated
182 MER49 2 n.s 43.0 Weakly correlated
183 MER4D 2 * 74.0 Weakly correlated
184 MER57-int 2 n.s 87.0 Weakly correlated
185 MER57E2 2 **** 87.0 Weakly correlated
186 MER65D 2 *** 87.0 Weakly correlated
187 MER68B 2 ** 99.0 Highly correlated
188 MER73 2 *** 87.0 Weakly correlated
189 MER74A 2 n.s 99.0 Highly correlated
190 MLT1A0-int 2 * 99.0 Highly correlated
191 MLT1B 2 n.s 99.0 Highly correlated
192 MLT1E2 2 n.s 99.0 Highly correlated
193 MLT1F2 2 n.s 99.0 Highly correlated
194 MLT1M 2 * 99.0 Highly correlated
195 MLT1N2 2 n.s 99.0 Highly correlated
196 MLT1O 2 n.s 99.0 Highly correlated
197 MLT2B4 2 n.s 99.0 Highly correlated
198 MLT2C2 2 * 99.0 Highly correlated
199 MamGypLTR1c 2 ** 99.0 Highly correlated
200 MamGypsy2-I 2 n.s 99.0 Highly correlated
201 MamSINE1 2 n.s 99.0 Highly correlated
202 Plat_L3 2 * 99.0 Highly correlated
203 SVA_A 2 * 19.6 Weakly correlated
204 THE1C 2 n.s 43.0 Weakly correlated
205 THE1C-int 2 n.s 43.0 Weakly correlated
206 X7B_LINE 2 *** 319.0 Weakly correlated
207 X7C_LINE 2 *** 319.0 Weakly correlated
208 X9_LINE 2 **** 319.0 Weakly correlated
209 AluSc5 1 n.s 74.0 Weakly correlated
210 AluYm1 1 n.s 19.6 Weakly correlated
211 ERVL-E-int 1 n.s 99.0 Highly correlated
212 HERV16-int 1 n.s 99.0 Highly correlated
213 HERV9NC-int 1 n.s 19.6 Weakly correlated
214 HERVIP10FH-int 1 n.s 28.9 Weakly correlated
215 HERVL-int 1 n.s 74.0 Weakly correlated
216 HUERS-P3b-int 1 n.s 43.0 Weakly correlated
217 L1M3de 1 n.s 99.0 Highly correlated
218 L1M8 1 n.s 99.0 Highly correlated
219 L1MA1 1 n.s 74.0 Weakly correlated
220 L1ME5 1 n.s 99.0 Highly correlated
221 L1MEj 1 n.s 99.0 Highly correlated
222 L1PA17 1 n.s 74.0 Weakly correlated
223 L1PA2 1 n.s 15.2 Weakly correlated
224 L1PA7 1 n.s 74.0 Weakly correlated
225 L4_C_Mam 1 n.s 99.0 Highly correlated
226 LTR16B1 1 n.s 99.0 Highly correlated
227 LTR16B2 1 n.s 99.0 Highly correlated
228 LTR25-int 1 n.s 43.0 Weakly correlated
229 LTR40c 1 * 99.0 Highly correlated
230 LTR50 1 n.s 99.0 Highly correlated
231 LTR53-int 1 * 99.0 Highly correlated
232 LTR8 1 n.s 43.0 Weakly correlated
233 LTR81 1 ** 99.0 Highly correlated
234 LTR81A 1 * 99.0 Highly correlated
235 MER11A 1 n.s 28.9 Weakly correlated
236 MER21B 1 n.s 99.0 Highly correlated
237 MER41-int 1 n.s 74.0 Weakly correlated
238 MER4D1 1 n.s 74.0 Weakly correlated
239 MER50 1 n.s 43.0 Weakly correlated
240 MER50-int 1 n.s 43.0 Weakly correlated
241 MER65-int 1 n.s 87.0 Weakly correlated
242 MLT1G1-int 1 * 99.0 Highly correlated
243 MLT1H-int 1 n.s 99.0 Highly correlated
244 MLT1H2 1 n.s 99.0 Highly correlated
245 MLT2B3 1 n.s 99.0 Highly correlated
246 Penelope1_Vert 1 ** 319.0 Weakly correlated
247 SVA_D 1 n.s 15.2 Weakly correlated
248 SVA_E 1 n.s 0.0 Weakly correlated
249 X6B_LINE 1 ** 99.0 Highly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1M5 178 **** 99.0 Highly correlated
2 L1M4 96 **** 99.0 Highly correlated
3 L1ME1 80 **** 99.0 Highly correlated
4 L1MB7 53 **** 99.0 Highly correlated
5 L1MEc 53 **** 99.0 Highly correlated
6 L1MEd 44 **** 99.0 Highly correlated
7 L1ME2 39 **** 99.0 Highly correlated
8 L1MEg 37 **** 99.0 Highly correlated
9 HAL1ME 32 **** 99.0 Highly correlated
10 L1MB8 32 **** 99.0 Highly correlated
11 L1MEf 29 **** 99.0 Highly correlated
12 L1MC 28 **** 99.0 Highly correlated
13 L1MB5 27 **** 99.0 Highly correlated
14 L1MD 22 **** 99.0 Highly correlated
15 L1ME3A 22 **** 99.0 Highly correlated
16 MIRb 22 n.s 99.0 Highly correlated
17 L1MB4 21 **** 99.0 Highly correlated
18 L1M4b 18 **** 99.0 Highly correlated
19 L2a 18 n.s 99.0 Highly correlated
20 L1MEi 17 **** 99.0 Highly correlated
21 L1MD2 15 ** 99.0 Highly correlated
22 MIR 15 n.s 99.0 Highly correlated
23 L1ME3B 14 **** 99.0 Highly correlated
24 MIRc 14 n.s 99.0 Highly correlated
25 L1MCa 13 ** 99.0 Highly correlated
26 L1ME4a 12 n.s 99.0 Highly correlated
27 L2 12 n.s 99.0 Highly correlated
28 HAL1 11 n.s 99.0 Highly correlated
29 L1MC1 11 n.s 99.0 Highly correlated
30 L1MA9 10 n.s 99.0 Highly correlated
31 MIR3 10 n.s 99.0 Highly correlated
32 L1MB3 9 n.s 99.0 Highly correlated
33 L1ME3D 9 *** 99.0 Highly correlated
34 L1MDa 8 n.s 99.0 Highly correlated
35 L1ME3 8 n.s 99.0 Highly correlated
36 L1ME3E 8 *** 99.0 Highly correlated
37 AluSz 7 n.s 74.0 Weakly correlated
38 L1M4c 7 * 99.0 Highly correlated
39 L1MC4 7 n.s 99.0 Highly correlated
40 MLT1K 7 n.s 99.0 Highly correlated
41 AluJo 6 n.s 74.0 Weakly correlated
42 AluSq2 6 n.s 74.0 Weakly correlated
43 AluSx3 6 n.s 74.0 Weakly correlated
44 L1M2 6 n.s 99.0 Highly correlated
45 L1M3 6 n.s 99.0 Highly correlated
46 L1ME2z 6 n.s 99.0 Highly correlated
47 L1MEb 6 **** 99.0 Highly correlated
48 AluJb 5 n.s 74.0 Weakly correlated
49 AluSx 5 n.s 74.0 Weakly correlated
50 AluY 5 n.s 74.0 Weakly correlated
51 L1M4a1 5 ** 99.0 Highly correlated
52 L1M4a2 5 ** 99.0 Highly correlated
53 L1MA8 5 n.s 87.0 Weakly correlated
54 L1MC4a 5 n.s 99.0 Highly correlated
55 L1ME3Cz 5 n.s 99.0 Highly correlated
56 L1ME3F 5 * 99.0 Highly correlated
57 L1ME3G 5 n.s 99.0 Highly correlated
58 L2b 5 n.s 99.0 Highly correlated
59 L2c 5 n.s 99.0 Highly correlated
60 AluSp 4 n.s 74.0 Weakly correlated
61 L1M7 4 * 99.0 Highly correlated
62 L1MC2 4 n.s 99.0 Highly correlated
63 L1MCc 4 n.s 99.0 Highly correlated
64 L1MD3 4 n.s 99.0 Highly correlated
65 L1ME4c 4 n.s 99.0 Highly correlated
66 L1PB4 4 n.s 99.0 Highly correlated
67 L1MA4 3 n.s 87.0 Weakly correlated
68 L1MA5 3 n.s 87.0 Weakly correlated
69 L1MC3 3 n.s 99.0 Highly correlated
70 L1MD1 3 n.s 99.0 Highly correlated
71 L1MDb 3 ** 99.0 Highly correlated
72 L1ME4b 3 n.s 99.0 Highly correlated
73 L1PB3 3 n.s 74.0 Weakly correlated
74 L3 3 n.s 99.0 Highly correlated
75 LTR16A 3 n.s 99.0 Highly correlated
76 AluSg 2 n.s 74.0 Weakly correlated
77 AluSg7 2 n.s 74.0 Weakly correlated
78 L1M1 2 n.s 74.0 Weakly correlated
79 L1M3c 2 n.s 99.0 Highly correlated
80 L1M6 2 n.s 99.0 Highly correlated
81 L1M6B 2 *** 99.0 Highly correlated
82 L1MA5A 2 n.s 87.0 Weakly correlated
83 L1MA7 2 n.s 87.0 Weakly correlated
84 L1MB1 2 n.s 99.0 Highly correlated
85 L1MB2 2 n.s 99.0 Highly correlated
86 L1MC5a 2 n.s 99.0 Highly correlated
87 L1MCb 2 n.s 99.0 Highly correlated
88 L1ME3C 2 n.s 99.0 Highly correlated
89 L1MEa 2 ** 99.0 Highly correlated
90 L1MEg1 2 ** 99.0 Highly correlated
91 L1P4 2 n.s 74.0 Weakly correlated
92 L1PA4 2 n.s 19.6 Weakly correlated
93 L1PREC2 2 n.s 43.0 Weakly correlated
94 MLT1H1 2 n.s 99.0 Highly correlated
95 AluJr 1 n.s 74.0 Weakly correlated
96 AluSc 1 n.s 74.0 Weakly correlated
97 AluSq 1 n.s 74.0 Weakly correlated
98 AluSx1 1 n.s 74.0 Weakly correlated
99 HAL1M8 1 n.s 99.0 Highly correlated
100 HAL1b 1 n.s 99.0 Highly correlated
101 HERVIP10FH-int 1 n.s 28.9 Weakly correlated
102 L1M2a 1 n.s 87.0 Weakly correlated
103 L1M3b 1 n.s 99.0 Highly correlated
104 L1M8 1 n.s 99.0 Highly correlated
105 L1MA1 1 n.s 74.0 Weakly correlated
106 L1MA3 1 n.s 74.0 Weakly correlated
107 L1MA4A 1 n.s 87.0 Weakly correlated
108 L1MA6 1 n.s 87.0 Weakly correlated
109 L1MC5 1 n.s 99.0 Highly correlated
110 L1MEg2 1 * 99.0 Highly correlated
111 L1MEh 1 n.s 99.0 Highly correlated
112 L1PA13 1 n.s 74.0 Weakly correlated
113 L1PA14 1 n.s 74.0 Weakly correlated
114 L1PA15 1 n.s 74.0 Weakly correlated
115 L1PA16 1 n.s 74.0 Weakly correlated
116 L1PA17 1 n.s 74.0 Weakly correlated
117 L1PA2 1 n.s 15.2 Weakly correlated
118 L1PA3 1 n.s 19.6 Weakly correlated
119 L1PA8 1 n.s 74.0 Weakly correlated
120 L1PA8A 1 n.s 74.0 Weakly correlated
121 L3b 1 n.s 99.0 Highly correlated
122 LTR47A 1 * 74.0 Weakly correlated
123 LTR54 1 n.s 74.0 Weakly correlated
124 LTR57-int 1 * 74.0 Weakly correlated
125 LTR79 1 n.s 99.0 Highly correlated
126 LTR81 1 ** 99.0 Highly correlated
127 MER34C2 1 * 74.0 Weakly correlated
128 MER57E2 1 *** 87.0 Weakly correlated
129 MER65-int 1 n.s 87.0 Weakly correlated
130 MER68B 1 * 99.0 Highly correlated
131 MIR1_Amn 1 n.s 319.0 Weakly correlated
132 MLT1A1 1 n.s 87.0 Weakly correlated
133 MLT1C 1 n.s 94.0 Weakly correlated
134 MLT1G1 1 n.s 99.0 Highly correlated
135 MLT1H-int 1 n.s 99.0 Highly correlated
136 MLT1J 1 n.s 99.0 Highly correlated
137 MLT1J1 1 n.s 99.0 Highly correlated
138 MLT1J2 1 n.s 99.0 Highly correlated
139 MLT1L 1 n.s 99.0 Highly correlated
140 X7B_LINE 1 * 319.0 Weakly correlated
141 X7C_LINE 1 ** 319.0 Weakly correlated
142 AluJr4 1 n.s 74.0 Weakly correlated
143 MER41-int 1 n.s 74.0 Weakly correlated
144 MER66D 1 ** 43.0 Weakly correlated
145 L4_C_Mam 1 n.s 99.0 Highly correlated
146 AluSq10 1 n.s 74.0 Weakly correlated
147 FLAM_A 1 n.s 74.0 Weakly correlated
148 L1MEj 1 n.s 99.0 Highly correlated
149 MLT1B 1 n.s 99.0 Highly correlated
150 MSTB 1 n.s 43.0 Weakly correlated
151 MamRTE1 1 n.s 99.0 Highly correlated
152 HERV9NC-int 1 n.s 19.6 Weakly correlated
153 LTR37A 1 n.s 99.0 Highly correlated
154 AluSz6 1 n.s 74.0 Weakly correlated
155 MSTB1 1 n.s 74.0 Weakly correlated
156 Plat_L3 1 n.s 99.0 Highly correlated
157 MLT1O 1 n.s 99.0 Highly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 ALUJO 74.0 Weakly correlated
2 ALUSQ2 74.0 Weakly correlated
3 ALUSX3 74.0 Weakly correlated
4 ALUSZ 74.0 Weakly correlated
5 HAL1ME 99.0 Highly correlated
6 L1M3 99.0 Highly correlated
7 L1M5 99.0 Highly correlated
8 L1MB8 99.0 Highly correlated
9 L1MC 99.0 Highly correlated
10 L1MC1 99.0 Highly correlated
11 L1MD 99.0 Highly correlated
12 L1MDA 99.0 Highly correlated
13 L1MED 99.0 Highly correlated
14 L1MEG 99.0 Highly correlated
15 L1MEI 99.0 Highly correlated